Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:22:49 (29459): wrapper (7.7.26015): starting
12:22:49 (29459): wrapper: running run_atlas (--nthreads 4)
[2025-10-10 12:22:49] Arguments: --nthreads 4
[2025-10-10 12:22:49] Threads: 4
[2025-10-10 12:22:49] Checking for CVMFS
[2025-10-10 12:22:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 12:22:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 12:22:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 12:22:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 12:22:50] 2.11.2.0 2311 39998 65364 151555 2 56 17759069 20275201 1 130560 0 20145909 99.989 1295233 56027 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 12:22:50] CVMFS is ok
[2025-10-10 12:22:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 12:22:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 12:22:50] Further information can be found at the LHC@home message board.
[2025-10-10 12:22:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 12:22:50] Checking for apptainer binary...
[2025-10-10 12:22:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 12:22:50] Running /usr/bin/apptainer --version
[2025-10-10 12:22:50] apptainer version 1.3.2-1.el7
[2025-10-10 12:22:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 12:22:50] c-205-34.aglt2.org
[2025-10-10 12:22:50] apptainer works
[2025-10-10 12:22:50] Set ATHENA_PROC_NUMBER=4
[2025-10-10 12:22:50] Set ATHENA_CORE_NUMBER=4
[2025-10-10 12:22:50] Starting ATLAS job with PandaID=6837398647
[2025-10-10 12:22:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 13:55:12]  *** The last 200 lines of the pilot log: ***
[2025-10-10 13:55:12] 2025-10-10 17:54:25,554 | INFO     | total number of processed events: 400 (read)
[2025-10-10 13:55:12] 2025-10-10 17:54:25,555 | INFO     | executing command: lscpu
[2025-10-10 13:55:12] 2025-10-10 17:54:25,566 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 13:55:12] 2025-10-10 17:54:26,212 | INFO     | time since job start (5488s) is within the limit (172800.0s)
[2025-10-10 13:55:12] 2025-10-10 17:54:26,296 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 13:55:12] 2025-10-10 17:54:26,336 | INFO     | job 6837398647 has state=finished
[2025-10-10 13:55:12] 2025-10-10 17:54:26,336 | INFO     | preparing for final server update for job 6837398647 in state='finished'
[2025-10-10 13:55:12] 2025-10-10 17:54:26,337 | INFO     | this job has now completed (state=finished)
[2025-10-10 13:55:12] 2025-10-10 17:54:26,337 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 13:55:12] 2025-10-10 17:54:26,337 | INFO     | log transfer has been attempted: DONE
[2025-10-10 13:55:12] 2025-10-10 17:54:26,337 | INFO     | job 6837398647 has finished - writing final server update
[2025-10-10 13:55:12] 2025-10-10 17:54:26,337 | INFO     | total number of processed events: 400 (read)
[2025-10-10 13:55:12] 2025-10-10 17:54:26,337 | INFO     | executing command: lscpu
[2025-10-10 13:55:12] 2025-10-10 17:54:27,951 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 13:55:12] 2025-10-10 17:54:27,955 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 1644.14925
[2025-10-10 13:55:12] 2025-10-10 17:54:27,957 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837398647/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 13:55:12] 2025-10-10 17:54:27,958 | INFO     | extracted standard info from prmon json
[2025-10-10 13:55:12] 2025-10-10 17:54:27,958 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 13:55:12] 2025-10-10 17:54:27,958 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 13:55:12] 2025-10-10 17:54:27,959 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 13:55:12] 2025-10-10 17:54:27,959 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 13:55:12] 2025-10-10 17:54:27,960 | INFO     | fitting pss+swap vs Time
[2025-10-10 13:55:12] 2025-10-10 17:54:27,961 | INFO     | sum of square deviations: 177275882.0
[2025-10-10 13:55:12] 2025-10-10 17:54:27,961 | INFO     | sum of deviations: -14445211384.000002
[2025-10-10 13:55:12] 2025-10-10 17:54:27,961 | INFO     | mean x: 1760116205.0
[2025-10-10 13:55:12] 2025-10-10 17:54:27,961 | INFO     | mean y: 2509133.674698795
[2025-10-10 13:55:12] 2025-10-10 17:54:27,961 | INFO     | -- intersect: 143424447610.49966
[2025-10-10 13:55:12] 2025-10-10 17:54:27,961 | INFO     | intersect: 143424447610.49966
[2025-10-10 13:55:12] 2025-10-10 17:54:27,962 | INFO     | chi2: 0.08023586627643296
[2025-10-10 13:55:12] 2025-10-10 17:54:27,962 | INFO     | -- intersect: 143424447610.49966
[2025-10-10 13:55:12] 2025-10-10 17:54:27,962 | INFO     | current memory leak: -81.48 B/s (using 83 data points, chi2=0.08)
[2025-10-10 13:55:12] 2025-10-10 17:54:27,962 | INFO     | could have reported an average CPU frequency of 2831 MHz (6 samples)
[2025-10-10 13:55:12] 2025-10-10 17:54:27,966 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 13:55:12] 2025-10-10 17:54:28,217 | INFO     | time since job start (5490s) is within the limit (172800.0s)
[2025-10-10 13:55:12] 2025-10-10 17:54:30,222 | INFO     | time since job start (5492s) is within the limit (172800.0s)
[2025-10-10 13:55:12] 2025-10-10 17:54:30,464 | INFO     | monitor loop #416: job 0:6837398647 is in state 'finished'
[2025-10-10 13:55:12] 2025-10-10 17:54:30,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 13:55:12] 2025-10-10 17:54:30,676 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 13:55:12] 2025-10-10 17:54:30,677 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3385.2992499999996
[2025-10-10 13:55:12] 2025-10-10 17:54:30,678 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837398647/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 13:55:12] 2025-10-10 17:54:30,678 | INFO     | extracted standard info from prmon json
[2025-10-10 13:55:12] 2025-10-10 17:54:30,678 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 13:55:12] 2025-10-10 17:54:30,678 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 13:55:12] 2025-10-10 17:54:30,678 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 13:55:12] 2025-10-10 17:54:30,678 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 13:55:12] 2025-10-10 17:54:30,679 | INFO     | fitting pss+swap vs Time
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | sum of square deviations: 177275882.0
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | sum of deviations: -14445211384.000002
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | mean x: 1760116205.0
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | mean y: 2509133.674698795
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | -- intersect: 143424447610.49966
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | intersect: 143424447610.49966
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | chi2: 0.08023586627643296
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | -- intersect: 143424447610.49966
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | current memory leak: -81.48 B/s (using 83 data points, chi2=0.08)
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | could have reported an average CPU frequency of 2911 MHz (7 samples)
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | ..............................
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | . Timing measurements:
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | . get job = 0 s
[2025-10-10 13:55:12] 2025-10-10 17:54:30,680 | INFO     | . initial setup = 2 s
[2025-10-10 13:55:12] 2025-10-10 17:54:30,681 | INFO     | . payload setup = 3 s
[2025-10-10 13:55:12] 2025-10-10 17:54:30,681 | INFO     | . stage-in = 0 s
[2025-10-10 13:55:12] 2025-10-10 17:54:30,681 | INFO     | . payload execution = 5465 s
[2025-10-10 13:55:12] 2025-10-10 17:54:30,681 | INFO     | . stage-out = 0 s
[2025-10-10 13:55:12] 2025-10-10 17:54:30,681 | INFO     | . log creation = 0 s
[2025-10-10 13:55:12] 2025-10-10 17:54:30,681 | INFO     | ..............................
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | 
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | job summary report
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | --------------------------------------------------
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | PanDA job id: 6837398647
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | task id: 46676269
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | errors: (none)
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | pilot state: finished 
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | transexitcode: 0
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | exeerrorcode: 0
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | exeerrordiag: 
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | exitcode: 0
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | exitmsg: OK
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | cpuconsumptiontime: 21120 s
[2025-10-10 13:55:12] 2025-10-10 17:54:30,719 | INFO     | nevents: 400
[2025-10-10 13:55:12] 2025-10-10 17:54:30,720 | INFO     | neventsw: 0
[2025-10-10 13:55:12] 2025-10-10 17:54:30,720 | INFO     | pid: 7220
[2025-10-10 13:55:12] 2025-10-10 17:54:30,720 | INFO     | pgrp: 7220
[2025-10-10 13:55:12] 2025-10-10 17:54:30,720 | INFO     | corecount: 4
[2025-10-10 13:55:12] 2025-10-10 17:54:30,720 | INFO     | event service: False
[2025-10-10 13:55:12] 2025-10-10 17:54:30,720 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 5472: 2375816, 5473: 2384814, 5475: 2384870, 5479: 2385216}
[2025-10-10 13:55:12] 2025-10-10 17:54:30,720 | INFO     | --------------------------------------------------
[2025-10-10 13:55:12] 2025-10-10 17:54:30,720 | INFO     | 
[2025-10-10 13:55:12] 2025-10-10 17:54:30,720 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 13:55:12] 2025-10-10 17:54:30,731 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,731 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,731 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,731 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,731 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,731 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,731 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,731 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | job 6837398647 has completed (purged errors)
[2025-10-10 13:55:12] 2025-10-10 17:54:30,732 | INFO     | overall cleanup function is called
[2025-10-10 13:55:12] 2025-10-10 17:54:31,738 | INFO     | --- collectZombieJob: --- 10, [7220]
[2025-10-10 13:55:12] 2025-10-10 17:54:31,739 | INFO     | zombie collector waiting for pid 7220
[2025-10-10 13:55:12] 2025-10-10 17:54:31,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 13:55:12] 2025-10-10 17:54:31,739 | INFO     | collected zombie processes
[2025-10-10 13:55:12] 2025-10-10 17:54:31,739 | INFO     | will attempt to kill all subprocesses of pid=7220
[2025-10-10 13:55:12] 2025-10-10 17:54:31,769 | INFO     | process IDs to be killed: [7220] (in reverse order)
[2025-10-10 13:55:12] 2025-10-10 17:54:31,792 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 13:55:12] 2025-10-10 17:54:31,792 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 13:55:12] 2025-10-10 17:54:31,793 | INFO     | did not find any defunct processes belonging to 7220
[2025-10-10 13:55:12] 2025-10-10 17:54:31,794 | INFO     | did not find any defunct processes belonging to 7220
[2025-10-10 13:55:12] 2025-10-10 17:54:31,794 | INFO     | ready for new job
[2025-10-10 13:55:12] 2025-10-10 17:54:31,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 13:55:12] 2025-10-10 17:54:31,795 | INFO     | ***************************************
[2025-10-10 13:55:12] 2025-10-10 17:54:31,795 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 13:55:12] 2025-10-10 17:54:31,795 | INFO     | ***************************************
[2025-10-10 13:55:12] 2025-10-10 17:54:31,795 | INFO     | 
[2025-10-10 13:55:12] 2025-10-10 17:54:31,795 | INFO     | architecture information:
[2025-10-10 13:55:12] 2025-10-10 17:54:31,796 | INFO     | executing command: cat /etc/os-release
[2025-10-10 13:55:12] 2025-10-10 17:54:31,804 | INFO     | cat /etc/os-release:
[2025-10-10 13:55:12] NAME="CentOS Linux"
[2025-10-10 13:55:12] VERSION="7 (Core)"
[2025-10-10 13:55:12] ID="centos"
[2025-10-10 13:55:12] ID_LIKE="rhel fedora"
[2025-10-10 13:55:12] VERSION_ID="7"
[2025-10-10 13:55:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 13:55:12] ANSI_COLOR="0;31"
[2025-10-10 13:55:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 13:55:12] HOME_URL="https://www.centos.org/"
[2025-10-10 13:55:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 13:55:12] 
[2025-10-10 13:55:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 13:55:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 13:55:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 13:55:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 13:55:12] 
[2025-10-10 13:55:12] 2025-10-10 17:54:31,804 | INFO     | ***************************************
[2025-10-10 13:55:12] 2025-10-10 17:54:32,307 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 13:55:12] 2025-10-10 17:54:32,322 | INFO     | sufficient remaining disk space (29366419456 B)
[2025-10-10 13:55:12] 2025-10-10 17:54:32,323 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 13:55:12] 2025-10-10 17:54:32,323 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 13:55:12] 2025-10-10 17:54:32,323 | INFO     | update_server=False
[2025-10-10 13:55:12] 2025-10-10 17:54:32,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 13:55:12] 2025-10-10 17:54:32,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:55:12] 2025-10-10 17:54:32,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 13:55:12] 2025-10-10 17:54:32,324 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:55:12] 2025-10-10 17:54:32,325 | INFO     | aborting loop
[2025-10-10 13:55:12] 2025-10-10 17:54:32,342 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 13:55:12] 2025-10-10 17:54:33,157 | INFO     | all job control threads have been joined
[2025-10-10 13:55:12] 2025-10-10 17:54:33,317 | INFO     | all data control threads have been joined
[2025-10-10 13:55:12] 2025-10-10 17:54:33,328 | INFO     | [job] queue monitor thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:33,328 | INFO     | [job] retrieve thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:33,330 | INFO     | [job] job monitor thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:33,529 | INFO     | all payload control threads have been joined
[2025-10-10 13:55:12] 2025-10-10 17:54:33,750 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:33,791 | INFO     | [data] copytool_in thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:33,891 | INFO     | [payload] failed_post thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:34,162 | INFO     | [job] control thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:34,227 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:34,296 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:34,298 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:34,299 | INFO     | [job] validate thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:34,323 | INFO     | [data] control thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:34,330 | INFO     | [data] copytool_out thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:34,433 | INFO     | [payload] validate_post thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:34,534 | INFO     | [payload] control thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:54:36,345 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 13:55:12] 2025-10-10 17:55:03,340 | INFO     | PID=643 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-10-10 13:55:12] 2025-10-10 17:55:03,341 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 13:55:12] 2025-10-10 17:55:03,341 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 13:55:12] 2025-10-10 17:55:03,341 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 13:55:12] 2025-10-10 17:55:07,179 | INFO     | [monitor] cgroup control has ended
[2025-10-10 13:55:12] 2025-10-10 17:55:07,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216772859712)>', '<ExcThread(monitor, started 140216094410496)>']
[2025-10-10 13:55:12] 2025-10-10 17:55:08,366 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 13:55:12] 2025-10-10 17:55:08,367 | INFO     | [monitor] control thread has ended
[2025-10-10 13:55:12] 2025-10-10 17:55:12,412 | INFO     | all workflow threads have been joined
[2025-10-10 13:55:12] 2025-10-10 17:55:12,412 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 13:55:12] 2025-10-10 17:55:12,412 | INFO     | traces error code: 0
[2025-10-10 13:55:12] 2025-10-10 17:55:12,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 13:55:12] 2025-10-10 17:55:12,470 [wrapper] ==== pilot stdout END ====
[2025-10-10 13:55:12] 2025-10-10 17:55:12,472 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 13:55:12] 2025-10-10 17:55:12,474 [wrapper] pilotpid: 643
[2025-10-10 13:55:12] 2025-10-10 17:55:12,476 [wrapper] Pilot exit status: 0
[2025-10-10 13:55:12] 2025-10-10 17:55:12,482 [wrapper] pandaids: 6837398647
[2025-10-10 13:55:12] 2025-10-10 17:55:12,497 [wrapper] cleanup supervisor_pilot  5829 644
[2025-10-10 13:55:12] 2025-10-10 17:55:12,499 [wrapper] Test setup, not cleaning
[2025-10-10 13:55:12] 2025-10-10 17:55:12,501 [wrapper] apfmon messages muted
[2025-10-10 13:55:12] 2025-10-10 17:55:12,503 [wrapper] ==== wrapper stdout END ====
[2025-10-10 13:55:12] 2025-10-10 17:55:12,505 [wrapper] ==== wrapper stderr END ====
[2025-10-10 13:55:12]  *** Error codes and diagnostics ***
[2025-10-10 13:55:12]     "exeErrorCode": 0,
[2025-10-10 13:55:12]     "exeErrorDiag": "",
[2025-10-10 13:55:12]     "pilotErrorCode": 0,
[2025-10-10 13:55:12]     "pilotErrorDiag": "",
[2025-10-10 13:55:12]  *** Listing of results directory ***
[2025-10-10 13:55:12] total 409156
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 22:47 pilot3.tar.gz
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 23:03 queuedata.json
[2025-10-10 13:55:12] -rwx------ 1 boincer umatlas     36292 Oct  9 23:04 runpilot2-wrapper.sh
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas       100 Oct 10 12:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 13:55:12] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 12:22 run_atlas
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas       105 Oct 10 12:22 job.xml
[2025-10-10 13:55:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 12:22 start_atlas.sh
[2025-10-10 13:55:12] drwxrwx--x 2 boincer umatlas      4096 Oct 10 12:22 shared
[2025-10-10 13:55:12] -rw-r--r-- 2 boincer umatlas    569678 Oct 10 12:22 input.tar.gz
[2025-10-10 13:55:12] -rw-r--r-- 2 boincer umatlas 219991436 Oct 10 12:22 EVNT.46676267._001266.pool.root.1
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas         0 Oct 10 12:22 boinc_lockfile
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas      2550 Oct 10 12:22 pandaJob.out
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas    975525 Oct 10 12:22 agis_schedconf.cvmfs.json
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas   1560580 Oct 10 12:22 agis_ddmendpoints.agis.ALL.json
[2025-10-10 13:55:12] drwx------ 5 boincer umatlas      4096 Oct 10 12:22 pilot3
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas       529 Oct 10 13:53 boinc_task_state.xml
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas 192934323 Oct 10 13:54 HITS.46676269._031058.pool.root.1
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas      1041 Oct 10 13:54 memory_monitor_summary.json
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas    282008 Oct 10 13:54 log.46676269._031058.job.log.tgz.1
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas      7831 Oct 10 13:54 heartbeat.json
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas        95 Oct 10 13:55 pilot_heartbeat.json
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas      6237 Oct 10 13:55 init_data.xml
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas        27 Oct 10 13:55 wrapper_checkpoint.txt
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 13:55 boinc_mmap_file
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas      4744 Oct 10 13:55 pilotlog.txt
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas    793628 Oct 10 13:55 log.46676269._031058.job.log.1
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas       357 Oct 10 13:55 output.list
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas       620 Oct 10 13:55 runtime_log
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas   1095680 Oct 10 13:55 result.tar.gz
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas      8703 Oct 10 13:55 runtime_log.err
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas       656 Oct 10 13:55 pyPLDmybIR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmM7bNDmwmfign.diag
[2025-10-10 13:55:12] -rw-r--r-- 1 boincer umatlas     21770 Oct 10 13:55 stderr.txt
[2025-10-10 13:55:12] HITS file was successfully produced:
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas 192934323 Oct 10 13:54 shared/HITS.pool.root.1
[2025-10-10 13:55:12]  *** Contents of shared directory: ***
[2025-10-10 13:55:12] total 404900
[2025-10-10 13:55:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 12:22 start_atlas.sh
[2025-10-10 13:55:12] -rw-r--r-- 2 boincer umatlas    569678 Oct 10 12:22 input.tar.gz
[2025-10-10 13:55:12] -rw-r--r-- 2 boincer umatlas 219991436 Oct 10 12:22 ATLAS.root_0
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas 192934323 Oct 10 13:54 HITS.pool.root.1
[2025-10-10 13:55:12] -rw------- 1 boincer umatlas   1095680 Oct 10 13:55 result.tar.gz
13:55:14 (29459): run_atlas exited; CPU time 21135.308582
13:55:14 (29459): called boinc_finish(0)

</stderr_txt>
]]>

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