Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
16:36:27 (107089): wrapper (7.7.26015): starting
16:36:27 (107089): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 16:36:27] Arguments: --nthreads 12
[2025-10-10 16:36:27] Threads: 12
[2025-10-10 16:36:27] Checking for CVMFS
[2025-10-10 16:36:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 16:36:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 16:36:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 16:36:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 16:36:27] 2.13.2.0 3843265 2072 62024 151562 1 188 6120900 6144000 3668 130560 0 12353432 99.997 193275 553 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 16:36:27] CVMFS is ok
[2025-10-10 16:36:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 16:36:27] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 16:36:27] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 16:36:27] Further information can be found at the LHC@home message board.
[2025-10-10 16:36:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 16:36:27] Checking for apptainer binary...
[2025-10-10 16:36:27] apptainer is not installed, using version from CVMFS
[2025-10-10 16:36:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 16:36:28] XeonFire
[2025-10-10 16:36:28] apptainer works
[2025-10-10 16:36:28] Set ATHENA_PROC_NUMBER=12
[2025-10-10 16:36:28] Set ATHENA_CORE_NUMBER=12
[2025-10-10 16:36:28] Starting ATLAS job with PandaID=6837451280
[2025-10-10 16:36:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 17:29:07]  *** The last 200 lines of the pilot log: ***
[2025-10-10 17:29:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/a3/log.46676269._033377.job.log.tgz.1
[2025-10-10 17:29:07]  workdir=None
[2025-10-10 17:29:07] ]
[2025-10-10 17:29:07] 2025-10-10 22:28:24,188 | INFO     | transferring file log.46676269._033377.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6837451280/log.46676269._033377.job.log.tgz.1 to /var/lib/boinc
[2025-10-10 17:29:07] 2025-10-10 22:28:24,188 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6837451280/log.46676269._033377.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.466762
[2025-10-10 17:29:07] 2025-10-10 22:28:24,207 | INFO     | adding to output.list: log.46676269._033377.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/a3/log.46676269._033377.job.log.tg
[2025-10-10 17:29:07] 2025-10-10 22:28:24,208 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 17:29:07] 2025-10-10 22:28:24,208 | INFO     | summary of transferred files:
[2025-10-10 17:29:07] 2025-10-10 22:28:24,209 | INFO     |  -- lfn=log.46676269._033377.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 17:29:07] 2025-10-10 22:28:24,209 | INFO     | stage-out finished correctly
[2025-10-10 17:29:07] 2025-10-10 22:28:24,312 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 17:29:07] 2025-10-10 22:28:24,414 | INFO     | job 6837451280 has state=finished
[2025-10-10 17:29:07] 2025-10-10 22:28:24,415 | INFO     | preparing for final server update for job 6837451280 in state='finished'
[2025-10-10 17:29:07] 2025-10-10 22:28:24,415 | INFO     | this job has now completed (state=finished)
[2025-10-10 17:29:07] 2025-10-10 22:28:24,415 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 17:29:07] 2025-10-10 22:28:24,416 | INFO     | log transfer has been attempted: DONE
[2025-10-10 17:29:07] 2025-10-10 22:28:24,416 | INFO     | job 6837451280 has finished - writing final server update
[2025-10-10 17:29:07] 2025-10-10 22:28:24,416 | INFO     | total number of processed events: 400 (read)
[2025-10-10 17:29:07] 2025-10-10 22:28:24,417 | INFO     | executing command: lscpu
[2025-10-10 17:29:07] 2025-10-10 22:28:24,490 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 17:29:07] 2025-10-10 22:28:24,809 | INFO     | time since job start (3091s) is within the limit (172800.0s)
[2025-10-10 17:29:07] 2025-10-10 22:28:25,038 | INFO     | monitor loop #228: job 0:6837451280 is in state 'finished'
[2025-10-10 17:29:07] 2025-10-10 22:28:25,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:29:07] 2025-10-10 22:28:26,305 | INFO     | PID=111178 has CPU usage=15.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 17:29:07] 2025-10-10 22:28:26,305 | INFO     | .. there are 5 such processes running
[2025-10-10 17:29:07] 2025-10-10 22:28:27,305 | INFO     | time since job start (3094s) is within the limit (172800.0s)
[2025-10-10 17:29:07] 2025-10-10 22:28:27,541 | INFO     | monitor loop #229: job 0:6837451280 is in state 'finished'
[2025-10-10 17:29:07] 2025-10-10 22:28:27,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:29:07] 2025-10-10 22:28:29,311 | INFO     | time since job start (3096s) is within the limit (172800.0s)
[2025-10-10 17:29:07] 2025-10-10 22:28:30,044 | INFO     | monitor loop #230: job 0:6837451280 is in state 'finished'
[2025-10-10 17:29:07] 2025-10-10 22:28:30,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:29:07] 2025-10-10 22:28:31,317 | INFO     | time since job start (3098s) is within the limit (172800.0s)
[2025-10-10 17:29:07] 2025-10-10 22:28:32,547 | INFO     | monitor loop #231: job 0:6837451280 is in state 'finished'
[2025-10-10 17:29:07] 2025-10-10 22:28:32,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:29:07] 2025-10-10 22:28:33,169 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 17:29:07] 2025-10-10 22:28:33,183 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2351.4863409090913
[2025-10-10 17:29:07] 2025-10-10 22:28:33,199 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6837451280/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:29:07] 2025-10-10 22:28:33,199 | INFO     | extracted standard info from prmon json
[2025-10-10 17:29:07] 2025-10-10 22:28:33,200 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 17:29:07] 2025-10-10 22:28:33,200 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 17:29:07] 2025-10-10 22:28:33,200 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:29:07] 2025-10-10 22:28:33,200 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:29:07] 2025-10-10 22:28:33,202 | INFO     | fitting pss+swap vs Time
[2025-10-10 17:29:07] 2025-10-10 22:28:33,202 | INFO     | sum of square deviations: 26400495.0
[2025-10-10 17:29:07] 2025-10-10 22:28:33,202 | INFO     | sum of deviations: -236597375.5000001
[2025-10-10 17:29:07] 2025-10-10 22:28:33,202 | INFO     | mean x: 1760133857.5
[2025-10-10 17:29:07] 2025-10-10 22:28:33,203 | INFO     | mean y: 2714146.8863636362
[2025-10-10 17:29:07] 2025-10-10 22:28:33,203 | INFO     | -- intersect: 15776776383.71909
[2025-10-10 17:29:07] 2025-10-10 22:28:33,203 | INFO     | intersect: 15776776383.71909
[2025-10-10 17:29:07] 2025-10-10 22:28:33,203 | INFO     | chi2: 0.038598919231632375
[2025-10-10 17:29:07] 2025-10-10 22:28:33,203 | INFO     | -- intersect: 15776776383.71909
[2025-10-10 17:29:07] 2025-10-10 22:28:33,203 | INFO     | current memory leak: -8.96 B/s (using 44 data points, chi2=0.04)
[2025-10-10 17:29:07] 2025-10-10 22:28:33,204 | INFO     | could have reported an average CPU frequency of 2262 MHz (5 samples)
[2025-10-10 17:29:07] 2025-10-10 22:28:33,204 | INFO     | ..............................
[2025-10-10 17:29:07] 2025-10-10 22:28:33,204 | INFO     | . Timing measurements:
[2025-10-10 17:29:07] 2025-10-10 22:28:33,204 | INFO     | . get job = 0 s
[2025-10-10 17:29:07] 2025-10-10 22:28:33,204 | INFO     | . initial setup = 13 s
[2025-10-10 17:29:07] 2025-10-10 22:28:33,204 | INFO     | . payload setup = 6 s
[2025-10-10 17:29:07] 2025-10-10 22:28:33,204 | INFO     | . stage-in = 0 s
[2025-10-10 17:29:07] 2025-10-10 22:28:33,205 | INFO     | . payload execution = 3064 s
[2025-10-10 17:29:07] 2025-10-10 22:28:33,205 | INFO     | . stage-out = 0 s
[2025-10-10 17:29:07] 2025-10-10 22:28:33,205 | INFO     | . log creation = 0 s
[2025-10-10 17:29:07] 2025-10-10 22:28:33,205 | INFO     | ..............................
[2025-10-10 17:29:07] 2025-10-10 22:28:33,308 | INFO     | 
[2025-10-10 17:29:07] 2025-10-10 22:28:33,308 | INFO     | job summary report
[2025-10-10 17:29:07] 2025-10-10 22:28:33,308 | INFO     | --------------------------------------------------
[2025-10-10 17:29:07] 2025-10-10 22:28:33,308 | INFO     | PanDA job id: 6837451280
[2025-10-10 17:29:07] 2025-10-10 22:28:33,308 | INFO     | task id: 46676269
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | errors: (none)
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | pilot state: finished 
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | transexitcode: 0
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | exeerrorcode: 0
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | exeerrordiag: 
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | exitcode: 0
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | exitmsg: OK
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | cpuconsumptiontime: 31719 s
[2025-10-10 17:29:07] 2025-10-10 22:28:33,309 | INFO     | nevents: 400
[2025-10-10 17:29:07] 2025-10-10 22:28:33,310 | INFO     | neventsw: 0
[2025-10-10 17:29:07] 2025-10-10 22:28:33,310 | INFO     | pid: 118243
[2025-10-10 17:29:07] 2025-10-10 22:28:33,310 | INFO     | pgrp: 118243
[2025-10-10 17:29:07] 2025-10-10 22:28:33,310 | INFO     | corecount: 12
[2025-10-10 17:29:07] 2025-10-10 22:28:33,310 | INFO     | event service: False
[2025-10-10 17:29:07] 2025-10-10 22:28:33,310 | INFO     | sizes: {0: 2348635, 1: 2348890, 6: 2349152, 12: 2349180, 3074: 2374458, 3075: 2383654, 3084: 2383824}
[2025-10-10 17:29:07] 2025-10-10 22:28:33,310 | INFO     | --------------------------------------------------
[2025-10-10 17:29:07] 2025-10-10 22:28:33,310 | INFO     | 
[2025-10-10 17:29:07] 2025-10-10 22:28:33,311 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-10 17:29:07] 2025-10-10 22:28:33,323 | INFO     | time since job start (3100s) is within the limit (172800.0s)
[2025-10-10 17:29:07] 2025-10-10 22:28:33,335 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,335 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,336 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,336 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,336 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,336 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,336 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,336 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,336 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,336 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,337 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 17:29:07] 2025-10-10 22:28:33,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,338 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 17:29:07] 2025-10-10 22:28:33,338 | INFO     | job 6837451280 has completed (purged errors)
[2025-10-10 17:29:07] 2025-10-10 22:28:33,338 | INFO     | overall cleanup function is called
[2025-10-10 17:29:07] 2025-10-10 22:28:34,347 | INFO     | --- collectZombieJob: --- 10, [118243]
[2025-10-10 17:29:07] 2025-10-10 22:28:34,347 | INFO     | zombie collector waiting for pid 118243
[2025-10-10 17:29:07] 2025-10-10 22:28:34,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 17:29:07] 2025-10-10 22:28:34,347 | INFO     | collected zombie processes
[2025-10-10 17:29:07] 2025-10-10 22:28:34,347 | INFO     | will attempt to kill all subprocesses of pid=118243
[2025-10-10 17:29:07] 2025-10-10 22:28:34,778 | INFO     | process IDs to be killed: [118243] (in reverse order)
[2025-10-10 17:29:07] 2025-10-10 22:28:34,904 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 17:29:07] 2025-10-10 22:28:34,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 17:29:07] 2025-10-10 22:28:34,915 | INFO     | did not find any defunct processes belonging to 118243
[2025-10-10 17:29:07] 2025-10-10 22:28:34,924 | INFO     | did not find any defunct processes belonging to 118243
[2025-10-10 17:29:07] 2025-10-10 22:28:34,924 | INFO     | ready for new job
[2025-10-10 17:29:07] 2025-10-10 22:28:34,924 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 17:29:07] 2025-10-10 22:28:34,926 | INFO     | ***************************************
[2025-10-10 17:29:07] 2025-10-10 22:28:34,926 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 17:29:07] 2025-10-10 22:28:34,926 | INFO     | ***************************************
[2025-10-10 17:29:07] 2025-10-10 22:28:34,926 | INFO     | 
[2025-10-10 17:29:07] 2025-10-10 22:28:34,932 | INFO     | architecture information:
[2025-10-10 17:29:07] 2025-10-10 22:28:34,932 | INFO     | executing command: cat /etc/os-release
[2025-10-10 17:29:07] 2025-10-10 22:28:34,949 | INFO     | cat /etc/os-release:
[2025-10-10 17:29:07] NAME="CentOS Linux"
[2025-10-10 17:29:07] VERSION="7 (Core)"
[2025-10-10 17:29:07] ID="centos"
[2025-10-10 17:29:07] ID_LIKE="rhel fedora"
[2025-10-10 17:29:07] VERSION_ID="7"
[2025-10-10 17:29:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 17:29:07] ANSI_COLOR="0;31"
[2025-10-10 17:29:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 17:29:07] HOME_URL="https://www.centos.org/"
[2025-10-10 17:29:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 17:29:07] 
[2025-10-10 17:29:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 17:29:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 17:29:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 17:29:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 17:29:07] 
[2025-10-10 17:29:07] 2025-10-10 22:28:34,949 | INFO     | ***************************************
[2025-10-10 17:29:07] 2025-10-10 22:28:35,452 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-10 17:29:07] 2025-10-10 22:28:35,469 | INFO     | sufficient remaining disk space (1813145190400 B)
[2025-10-10 17:29:07] 2025-10-10 22:28:35,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 17:29:07] 2025-10-10 22:28:35,470 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 17:29:07] 2025-10-10 22:28:35,470 | INFO     | update_server=False
[2025-10-10 17:29:07] 2025-10-10 22:28:35,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 17:29:07] 2025-10-10 22:28:35,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 17:29:07] 2025-10-10 22:28:35,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 17:29:07] 2025-10-10 22:28:35,765 | INFO     | all job control threads have been joined
[2025-10-10 17:29:07] 2025-10-10 22:28:35,979 | INFO     | all data control threads have been joined
[2025-10-10 17:29:07] 2025-10-10 22:28:36,018 | INFO     | all payload control threads have been joined
[2025-10-10 17:29:07] 2025-10-10 22:28:36,056 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:29:07] 2025-10-10 22:28:36,056 | INFO     | aborting loop
[2025-10-10 17:29:07] 2025-10-10 22:28:36,475 | INFO     | [job] retrieve thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:36,770 | INFO     | [job] control thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:36,984 | INFO     | [data] control thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,023 | INFO     | [payload] control thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,061 | INFO     | [job] job monitor thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,133 | INFO     | [payload] failed_post thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,197 | INFO     | [payload] validate_post thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,286 | INFO     | [job] validate thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,477 | INFO     | [data] copytool_out thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,652 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,707 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,806 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:37,854 | INFO     | [data] copytool_in thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:38,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:29:07] 2025-10-10 22:28:39,322 | INFO     | [job] queue monitor thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:39,477 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:46,381 | INFO     | job.realtimelogging is not enabled
[2025-10-10 17:29:07] 2025-10-10 22:28:47,386 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 17:29:07] 2025-10-10 22:28:57,130 | INFO     | [monitor] cgroup control has ended
[2025-10-10 17:29:07] 2025-10-10 22:28:58,789 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131043398686528)>', '<ExcThread(monitor, started 131042732140288)>']
[2025-10-10 17:29:07] 2025-10-10 22:29:03,814 | INFO     | all workflow threads have been joined
[2025-10-10 17:29:07] 2025-10-10 22:29:03,815 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 17:29:07] 2025-10-10 22:29:03,815 | INFO     | traces error code: 0
[2025-10-10 17:29:07] 2025-10-10 22:29:03,815 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 17:29:07] 2025-10-10 22:29:06,945 | INFO     | PID=111178 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 17:29:07] 2025-10-10 22:29:06,946 | INFO     | .. there are 5 such processes running
[2025-10-10 17:29:07] 2025-10-10 22:29:06,947 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 17:29:07] 2025-10-10 22:29:06,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 17:29:07] 2025-10-10 22:29:06,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 17:29:07] 2025-10-10 22:29:06,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 17:29:07] 2025-10-10 22:29:06,947 | INFO     | [monitor] control thread has ended
[2025-10-10 17:29:07] 2025-10-10 22:29:07,072 [wrapper] ==== pilot stdout END ====
[2025-10-10 17:29:07] 2025-10-10 22:29:07,075 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 17:29:07] 2025-10-10 22:29:07,078 [wrapper] pilotpid: 111178
[2025-10-10 17:29:07] 2025-10-10 22:29:07,081 [wrapper] Pilot exit status: 0
[2025-10-10 17:29:07] 2025-10-10 22:29:07,092 [wrapper] pandaids: 6837451280
[2025-10-10 17:29:07] 2025-10-10 22:29:07,163 [wrapper] cleanup supervisor_pilot  225398 111179
[2025-10-10 17:29:07] 2025-10-10 22:29:07,167 [wrapper] Test setup, not cleaning
[2025-10-10 17:29:07] 2025-10-10 22:29:07,170 [wrapper] apfmon messages muted
[2025-10-10 17:29:07] 2025-10-10 22:29:07,173 [wrapper] ==== wrapper stdout END ====
[2025-10-10 17:29:07] 2025-10-10 22:29:07,176 [wrapper] ==== wrapper stderr END ====
[2025-10-10 17:29:07]  *** Error codes and diagnostics ***
[2025-10-10 17:29:07]     "exeErrorCode": 0,
[2025-10-10 17:29:07]     "exeErrorDiag": "",
[2025-10-10 17:29:07]     "pilotErrorCode": 0,
[2025-10-10 17:29:07]     "pilotErrorDiag": "",
[2025-10-10 17:29:07]  *** Listing of results directory ***
[2025-10-10 17:29:07] total 407332
[2025-10-10 17:29:07] -rw-r--r-- 1 mark mark    557409 Oct 10 00:42 pilot3.tar.gz
[2025-10-10 17:29:07] -rwx------ 1 mark mark     36292 Oct 10 00:57 runpilot2-wrapper.sh
[2025-10-10 17:29:07] -rw-r--r-- 1 mark mark      5112 Oct 10 00:57 queuedata.json
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark       100 Oct 10 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 17:29:07] -rwxr-xr-x 1 mark mark      7986 Oct 10 16:36 run_atlas
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark       105 Oct 10 16:36 job.xml
[2025-10-10 17:29:07] -rw-r--r-- 2 mark mark 221914952 Oct 10 16:36 EVNT.46676267._001359.pool.root.1
[2025-10-10 17:29:07] -rw-r--r-- 2 mark mark     15120 Oct 10 16:36 start_atlas.sh
[2025-10-10 17:29:07] drwxrwx--x 2 mark mark      4096 Oct 10 16:36 shared
[2025-10-10 17:29:07] -rw-r--r-- 2 mark mark    569680 Oct 10 16:36 input.tar.gz
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark      9229 Oct 10 16:36 init_data.xml
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark         0 Oct 10 16:36 boinc_setup_complete
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark         0 Oct 10 16:36 boinc_lockfile
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark      2549 Oct 10 16:36 pandaJob.out
[2025-10-10 17:29:07] -rw------- 1 mark mark    975517 Oct 10 16:36 agis_schedconf.cvmfs.json
[2025-10-10 17:29:07] -rw------- 1 mark mark   1560580 Oct 10 16:36 agis_ddmendpoints.agis.ALL.json
[2025-10-10 17:29:07] drwx------ 5 mark mark      4096 Oct 10 16:36 pilot3
[2025-10-10 17:29:07] -rw------- 1 mark mark 189642877 Oct 10 17:27 HITS.46676269._033377.pool.root.1
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark       529 Oct 10 17:28 boinc_task_state.xml
[2025-10-10 17:29:07] -rw------- 1 mark mark      1032 Oct 10 17:28 memory_monitor_summary.json
[2025-10-10 17:29:07] -rw------- 1 mark mark    350813 Oct 10 17:28 log.46676269._033377.job.log.tgz.1
[2025-10-10 17:29:07] -rw------- 1 mark mark      7799 Oct 10 17:28 heartbeat.json
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark      8192 Oct 10 17:29 boinc_mmap_file
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark        27 Oct 10 17:29 wrapper_checkpoint.txt
[2025-10-10 17:29:07] -rw------- 1 mark mark        95 Oct 10 17:29 pilot_heartbeat.json
[2025-10-10 17:29:07] -rw------- 1 mark mark       821 Oct 10 17:29 pilotlog.txt
[2025-10-10 17:29:07] -rw------- 1 mark mark    473071 Oct 10 17:29 log.46676269._033377.job.log.1
[2025-10-10 17:29:07] -rw------- 1 mark mark       357 Oct 10 17:29 output.list
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark       620 Oct 10 17:29 runtime_log
[2025-10-10 17:29:07] -rw------- 1 mark mark    839680 Oct 10 17:29 result.tar.gz
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark      8759 Oct 10 17:29 runtime_log.err
[2025-10-10 17:29:07] -rw------- 1 mark mark       645 Oct 10 17:29 EXLKDm0ILR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZQPMDmjV1yWo.diag
[2025-10-10 17:29:07] -rw-rw-r-- 1 mark mark     22440 Oct 10 17:29 stderr.txt
[2025-10-10 17:29:07] HITS file was successfully produced:
[2025-10-10 17:29:07] -rw------- 1 mark mark 189642877 Oct 10 17:27 shared/HITS.pool.root.1
[2025-10-10 17:29:07]  *** Contents of shared directory: ***
[2025-10-10 17:29:07] total 403320
[2025-10-10 17:29:07] -rw-r--r-- 2 mark mark 221914952 Oct 10 16:36 ATLAS.root_0
[2025-10-10 17:29:07] -rw-r--r-- 2 mark mark     15120 Oct 10 16:36 start_atlas.sh
[2025-10-10 17:29:07] -rw-r--r-- 2 mark mark    569680 Oct 10 16:36 input.tar.gz
[2025-10-10 17:29:07] -rw------- 1 mark mark 189642877 Oct 10 17:27 HITS.pool.root.1
[2025-10-10 17:29:07] -rw------- 1 mark mark    839680 Oct 10 17:29 result.tar.gz
17:29:08 (107089): run_atlas exited; CPU time 31838.816323
17:29:08 (107089): called boinc_finish(0)

</stderr_txt>
]]>

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