Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:01:19 (3404568): wrapper (7.7.26015): starting
12:01:19 (3404568): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 12:01:19] Arguments: --nthreads 8
[2025-10-10 12:01:19] Threads: 8
[2025-10-10 12:01:19] Checking for CVMFS
[2025-10-10 12:01:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 12:01:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 12:01:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 12:01:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 12:01:22] 2.13.2.0 108345 126578 586012 151553 1 335 29185990 32935936 27567 16776704 0 226979114 99.569 247728942 20737 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 12:01:22] CVMFS is ok
[2025-10-10 12:01:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 12:01:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 12:01:22] Further information can be found at the LHC@home message board.
[2025-10-10 12:01:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 12:01:22] Checking for apptainer binary...
[2025-10-10 12:01:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 12:01:22] Running /usr/bin/apptainer --version
[2025-10-10 12:01:22] apptainer version 1.4.3-1.el9
[2025-10-10 12:01:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 12:01:23] c6-8-25-2.aglt2.org
[2025-10-10 12:01:23] apptainer works
[2025-10-10 12:01:23] Set ATHENA_PROC_NUMBER=8
[2025-10-10 12:01:23] Set ATHENA_CORE_NUMBER=8
[2025-10-10 12:01:23] Starting ATLAS job with PandaID=6837509815
[2025-10-10 12:01:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:10:52 (4181063): wrapper (7.7.26015): starting
16:10:52 (4181063): wrapper: running run_atlas (--nthreads 9)
[2025-10-10 16:10:52] Arguments: --nthreads 9
[2025-10-10 16:10:52] Threads: 9
[2025-10-10 16:10:52] This job has been restarted, cleaning up previous attempt
[2025-10-10 16:10:52] Checking for CVMFS
[2025-10-10 16:10:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 16:10:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 16:10:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 16:10:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 16:10:53] 2.13.2.0 108345 126827 590172 151559 3 470 29602105 32935937 23038 16776704 0 227782056 99.571 247807280 20738 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 16:10:53] CVMFS is ok
[2025-10-10 16:10:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 16:10:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 16:10:53] Further information can be found at the LHC@home message board.
[2025-10-10 16:10:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 16:10:53] Checking for apptainer binary...
[2025-10-10 16:10:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 16:10:53] Running /usr/bin/apptainer --version
[2025-10-10 16:10:53] apptainer version 1.4.3-1.el9
[2025-10-10 16:10:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 16:10:53] c6-8-25-2.aglt2.org
[2025-10-10 16:10:53] apptainer works
[2025-10-10 16:10:53] Set ATHENA_PROC_NUMBER=9
[2025-10-10 16:10:53] Set ATHENA_CORE_NUMBER=9
[2025-10-10 16:10:53] Starting ATLAS job with PandaID=6837509815
[2025-10-10 16:10:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 21:18:52]  *** The last 200 lines of the pilot log: ***
[2025-10-10 21:18:52] 2025-10-11 01:18:16,079 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 21:18:52] 2025-10-11 01:18:16,101 | INFO     | fitting pss+swap vs Time
[2025-10-10 21:18:52] 2025-10-11 01:18:16,101 | INFO     | sum of square deviations: 8456256268.737573
[2025-10-10 21:18:52] 2025-10-11 01:18:16,115 | INFO     | sum of deviations: 74379988459.84053
[2025-10-10 21:18:52] 2025-10-11 01:18:16,115 | INFO     | mean x: 1760136249.4086378
[2025-10-10 21:18:52] 2025-10-11 01:18:16,115 | INFO     | mean y: 2164987.830564784
[2025-10-10 21:18:52] 2025-10-11 01:18:16,131 | INFO     | -- intersect: -15479735011.198942
[2025-10-10 21:18:52] 2025-10-11 01:18:16,131 | INFO     | intersect: -15479735011.198942
[2025-10-10 21:18:52] 2025-10-11 01:18:16,132 | INFO     | chi2: 2.5859878391600724
[2025-10-10 21:18:52] 2025-10-11 01:18:16,132 | INFO     | sum of square deviations: 8041812324.53716
[2025-10-10 21:18:52] 2025-10-11 01:18:16,135 | INFO     | sum of deviations: 94068662172.6521
[2025-10-10 21:18:52] 2025-10-11 01:18:16,135 | INFO     | mean x: 1760136096.9087837
[2025-10-10 21:18:52] 2025-10-11 01:18:16,135 | INFO     | mean y: 2172144.1722972975
[2025-10-10 21:18:52] 2025-10-11 01:18:16,135 | INFO     | -- intersect: -20586924093.849182
[2025-10-10 21:18:52] 2025-10-11 01:18:16,135 | INFO     | intersect: -20586924093.849182
[2025-10-10 21:18:52] 2025-10-11 01:18:16,136 | INFO     | chi2: 1.7474679865537077
[2025-10-10 21:18:52] 2025-10-11 01:18:16,136 | INFO     | current chi2=1.7474679865537077 (change=32.42551414621948 %)
[2025-10-10 21:18:52] 2025-10-11 01:18:16,137 | INFO     | sum of square deviations: 7641099599.958776
[2025-10-10 21:18:52] 2025-10-11 01:18:16,139 | INFO     | sum of deviations: 91982646570.29897
[2025-10-10 21:18:52] 2025-10-11 01:18:16,139 | INFO     | mean x: 1760135944.402062
[2025-10-10 21:18:52] 2025-10-11 01:18:16,139 | INFO     | mean y: 2171350.501718213
[2025-10-10 21:18:52] 2025-10-11 01:18:16,139 | INFO     | -- intersect: -21186135433.313496
[2025-10-10 21:18:52] 2025-10-11 01:18:16,139 | INFO     | intersect: -21186135433.313496
[2025-10-10 21:18:52] 2025-10-11 01:18:16,140 | INFO     | chi2: 1.7463485620748813
[2025-10-10 21:18:52] 2025-10-11 01:18:16,140 | INFO     | current chi2=1.7463485620748813 (change=0.06405979894567859 %)
[2025-10-10 21:18:52] 2025-10-11 01:18:16,140 | INFO     | right removable region: 290
[2025-10-10 21:18:52] 2025-10-11 01:18:16,141 | INFO     | sum of square deviations: 8041773772.888513
[2025-10-10 21:18:52] 2025-10-11 01:18:16,143 | INFO     | sum of deviations: 23707967848.979767
[2025-10-10 21:18:52] 2025-10-11 01:18:16,143 | INFO     | mean x: 1760136401.9155405
[2025-10-10 21:18:52] 2025-10-11 01:18:16,143 | INFO     | mean y: 2183547.439189189
[2025-10-10 21:18:52] 2025-10-11 01:18:16,143 | INFO     | -- intersect: -5186877772.2308235
[2025-10-10 21:18:52] 2025-10-11 01:18:16,144 | INFO     | intersect: -5186877772.2308235
[2025-10-10 21:18:52] 2025-10-11 01:18:16,144 | INFO     | chi2: 0.9408981824871168
[2025-10-10 21:18:52] 2025-10-11 01:18:16,144 | INFO     | current chi2=0.9408981824871168 (change=63.61552176545733 %)
[2025-10-10 21:18:52] 2025-10-11 01:18:16,145 | INFO     | sum of square deviations: 7641077154.852236
[2025-10-10 21:18:52] 2025-10-11 01:18:16,147 | INFO     | sum of deviations: 20679047915.80407
[2025-10-10 21:18:52] 2025-10-11 01:18:16,147 | INFO     | mean x: 1760136554.419244
[2025-10-10 21:18:52] 2025-10-11 01:18:16,147 | INFO     | mean y: 2184693.9278350514
[2025-10-10 21:18:52] 2025-10-11 01:18:16,147 | INFO     | -- intersect: -4761273050.256885
[2025-10-10 21:18:52] 2025-10-11 01:18:16,147 | INFO     | intersect: -4761273050.256885
[2025-10-10 21:18:52] 2025-10-11 01:18:16,148 | INFO     | chi2: 0.9371312510325963
[2025-10-10 21:18:52] 2025-10-11 01:18:16,150 | INFO     | current chi2=0.9371312510325963 (change=0.4003548444065603 %)
[2025-10-10 21:18:52] 2025-10-11 01:18:16,150 | INFO     | left removable region: 20
[2025-10-10 21:18:52] 2025-10-11 01:18:16,150 | INFO     | sum of square deviations: 6103249000.51852
[2025-10-10 21:18:52] 2025-10-11 01:18:16,153 | INFO     | sum of deviations: 36532538835.81479
[2025-10-10 21:18:52] 2025-10-11 01:18:16,153 | INFO     | mean x: 1760136523.925926
[2025-10-10 21:18:52] 2025-10-11 01:18:16,153 | INFO     | mean y: 2192971.440740741
[2025-10-10 21:18:52] 2025-10-11 01:18:16,153 | INFO     | -- intersect: -10533548878.71103
[2025-10-10 21:18:52] 2025-10-11 01:18:16,153 | INFO     | intersect: -10533548878.71103
[2025-10-10 21:18:52] 2025-10-11 01:18:16,154 | INFO     | chi2: 0.08013517868890166
[2025-10-10 21:18:52] 2025-10-11 01:18:16,154 | INFO     | -- intersect: -10533548878.71103
[2025-10-10 21:18:52] 2025-10-11 01:18:16,154 | INFO     | current memory leak: 5.99 B/s (using 270 data points, chi2=0.08)
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | could have reported an average CPU frequency of 2593 MHz (13 samples)
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | ..............................
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | . Timing measurements:
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | . get job = 0 s
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | . initial setup = 2 s
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | . payload setup = 7 s
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | . stage-in = 0 s
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | . payload execution = 18359 s
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | . stage-out = 5 s
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | . log creation = 1 s
[2025-10-10 21:18:52] 2025-10-11 01:18:16,155 | INFO     | ..............................
[2025-10-10 21:18:52] 2025-10-11 01:18:16,633 | INFO     | 
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | job summary report
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | --------------------------------------------------
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | PanDA job id: 6837509815
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | task id: 46676269
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | errors: (none)
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | pilot state: finished 
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | transexitcode: 0
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | exeerrorcode: 0
[2025-10-10 21:18:52] 2025-10-11 01:18:16,634 | INFO     | exeerrordiag: 
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | exitcode: 0
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | exitmsg: OK
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | cpuconsumptiontime: 52106 s
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | nevents: 400
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | neventsw: 0
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | pid: 42273
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | pgrp: 42273
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | corecount: 9
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | event service: False
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 18371: 2381474, 18377: 2390472, 18381: 2390656, 18412: 2390850}
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | --------------------------------------------------
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | 
[2025-10-10 21:18:52] 2025-10-11 01:18:16,635 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-10 21:18:52] 2025-10-11 01:18:16,802 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,802 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,802 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,802 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,802 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,802 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,803 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 21:18:52] 2025-10-11 01:18:16,804 | INFO     | job 6837509815 has completed (purged errors)
[2025-10-10 21:18:52] 2025-10-11 01:18:16,804 | INFO     | overall cleanup function is called
[2025-10-10 21:18:52] 2025-10-11 01:18:17,821 | INFO     | --- collectZombieJob: --- 10, [42273]
[2025-10-10 21:18:52] 2025-10-11 01:18:17,821 | INFO     | zombie collector waiting for pid 42273
[2025-10-10 21:18:52] 2025-10-11 01:18:17,822 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 21:18:52] 2025-10-11 01:18:17,822 | INFO     | collected zombie processes
[2025-10-10 21:18:52] 2025-10-11 01:18:17,822 | INFO     | will attempt to kill all subprocesses of pid=42273
[2025-10-10 21:18:52] 2025-10-11 01:18:19,178 | INFO     | process IDs to be killed: [42273] (in reverse order)
[2025-10-10 21:18:52] 2025-10-11 01:18:19,794 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 21:18:52] 2025-10-11 01:18:19,795 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 21:18:52] 2025-10-11 01:18:19,854 | INFO     | did not find any defunct processes belonging to 42273
[2025-10-10 21:18:52] 2025-10-11 01:18:19,889 | INFO     | did not find any defunct processes belonging to 42273
[2025-10-10 21:18:52] 2025-10-11 01:18:19,890 | INFO     | ready for new job
[2025-10-10 21:18:52] 2025-10-11 01:18:19,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 21:18:52] 2025-10-11 01:18:19,896 | INFO     | ***************************************
[2025-10-10 21:18:52] 2025-10-11 01:18:19,897 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 21:18:52] 2025-10-11 01:18:19,897 | INFO     | ***************************************
[2025-10-10 21:18:52] 2025-10-11 01:18:19,897 | INFO     | 
[2025-10-10 21:18:52] 2025-10-11 01:18:19,915 | INFO     | architecture information:
[2025-10-10 21:18:52] 2025-10-11 01:18:19,916 | INFO     | executing command: cat /etc/os-release
[2025-10-10 21:18:52] 2025-10-11 01:18:19,951 | INFO     | cat /etc/os-release:
[2025-10-10 21:18:52] NAME="CentOS Linux"
[2025-10-10 21:18:52] VERSION="7 (Core)"
[2025-10-10 21:18:52] ID="centos"
[2025-10-10 21:18:52] ID_LIKE="rhel fedora"
[2025-10-10 21:18:52] VERSION_ID="7"
[2025-10-10 21:18:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 21:18:52] ANSI_COLOR="0;31"
[2025-10-10 21:18:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 21:18:52] HOME_URL="https://www.centos.org/"
[2025-10-10 21:18:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 21:18:52] 
[2025-10-10 21:18:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 21:18:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 21:18:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 21:18:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 21:18:52] 
[2025-10-10 21:18:52] 2025-10-11 01:18:19,952 | INFO     | ***************************************
[2025-10-10 21:18:52] 2025-10-11 01:18:20,456 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-10 21:18:52] 2025-10-11 01:18:20,533 | INFO     | sufficient remaining disk space (73495740416 B)
[2025-10-10 21:18:52] 2025-10-11 01:18:20,534 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 21:18:52] 2025-10-11 01:18:20,534 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 21:18:52] 2025-10-11 01:18:20,534 | INFO     | update_server=False
[2025-10-10 21:18:52] 2025-10-11 01:18:20,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 21:18:52] 2025-10-11 01:18:20,765 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 21:18:52] 2025-10-11 01:18:20,765 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 21:18:52] 2025-10-11 01:18:20,772 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 21:18:52] 2025-10-11 01:18:20,772 | INFO     | will abort loop
[2025-10-10 21:18:52] 2025-10-11 01:18:20,933 | INFO     | all payload control threads have been joined
[2025-10-10 21:18:52] 2025-10-11 01:18:21,234 | INFO     | all data control threads have been joined
[2025-10-10 21:18:52] 2025-10-11 01:18:21,362 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 21:18:52] 2025-10-11 01:18:21,539 | INFO     | [job] retrieve thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:21,550 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 21:18:52] 2025-10-11 01:18:21,604 | INFO     | [payload] validate_post thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:21,778 | INFO     | [job] job monitor thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:21,917 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:21,939 | INFO     | [payload] control thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:21,943 | INFO     | all job control threads have been joined
[2025-10-10 21:18:52] 2025-10-11 01:18:22,197 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 21:18:52] 2025-10-11 01:18:22,237 | INFO     | [payload] failed_post thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:22,240 | INFO     | [data] control thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:22,385 | INFO     | [job] queue monitor thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:22,420 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:22,421 | INFO     | [data] copytool_in thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:22,463 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:22,628 | INFO     | [job] validate thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:22,681 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:22,949 | INFO     | [job] control thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:23,572 | INFO     | [data] copytool_out thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:26,206 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 21:18:52] 2025-10-11 01:18:40,311 | INFO     | [monitor] cgroup control has ended
[2025-10-10 21:18:52] 2025-10-11 01:18:41,768 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140452611630912)>', '<ExcThread(monitor, started 140451990460160)>']
[2025-10-10 21:18:52] 2025-10-11 01:18:46,794 | INFO     | all workflow threads have been joined
[2025-10-10 21:18:52] 2025-10-11 01:18:46,794 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 21:18:52] 2025-10-11 01:18:46,795 | INFO     | traces error code: 0
[2025-10-10 21:18:52] 2025-10-11 01:18:46,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 21:18:52] 2025-10-11 01:18:49,971 | INFO     | PID=6166 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-10 21:18:52] 2025-10-11 01:18:49,972 | INFO     | .. there are 30 such processes running
[2025-10-10 21:18:52] 2025-10-11 01:18:49,972 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 21:18:52] 2025-10-11 01:18:49,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 21:18:52] 2025-10-11 01:18:49,973 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 21:18:52] 2025-10-11 01:18:49,973 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 21:18:52] 2025-10-11 01:18:49,973 | INFO     | [monitor] control thread has ended
[2025-10-10 21:18:52] 2025-10-11 01:18:50,312 [wrapper] ==== pilot stdout END ====
[2025-10-10 21:18:52] 2025-10-11 01:18:50,333 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 21:18:52] 2025-10-11 01:18:50,352 [wrapper] pilotpid: 6166
[2025-10-10 21:18:52] 2025-10-11 01:18:50,375 [wrapper] Pilot exit status: 0
[2025-10-10 21:18:52] 2025-10-11 01:18:50,465 [wrapper] pandaids: 6837509815 6837509815
[2025-10-10 21:18:52] 2025-10-11 01:18:51,455 [wrapper] cleanup supervisor_pilot  918281 6167
[2025-10-10 21:18:52] 2025-10-11 01:18:51,486 [wrapper] Test setup, not cleaning
[2025-10-10 21:18:52] 2025-10-11 01:18:51,499 [wrapper] apfmon messages muted
[2025-10-10 21:18:52] 2025-10-11 01:18:51,512 [wrapper] ==== wrapper stdout END ====
[2025-10-10 21:18:52] 2025-10-11 01:18:51,531 [wrapper] ==== wrapper stderr END ====
[2025-10-10 21:18:52]  *** Error codes and diagnostics ***
[2025-10-10 21:18:52]     "exeErrorCode": 0,
[2025-10-10 21:18:52]     "exeErrorDiag": "",
[2025-10-10 21:18:52]     "pilotErrorCode": 0,
[2025-10-10 21:18:52]     "pilotErrorDiag": "",
[2025-10-10 21:18:52]  *** Listing of results directory ***
[2025-10-10 21:18:52] total 630960
[2025-10-10 21:18:52] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 03:47 pilot3.tar.gz
[2025-10-10 21:18:52] -rwx------. 1 boincer umatlas     36292 Oct 10 03:52 runpilot2-wrapper.sh
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 03:52 queuedata.json
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas       100 Oct 10 12:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 21:18:52] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 12:01 run_atlas
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas       105 Oct 10 12:01 job.xml
[2025-10-10 21:18:52] -rw-r--r--. 3 boincer umatlas 218811995 Oct 10 12:01 EVNT.46676267._001411.pool.root.1
[2025-10-10 21:18:52] -rw-r--r--. 3 boincer umatlas 218811995 Oct 10 12:01 ATLAS.root_0
[2025-10-10 21:18:52] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 12:01 start_atlas.sh
[2025-10-10 21:18:52] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 12:01 shared
[2025-10-10 21:18:52] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 12:01 input.tar.gz
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas         0 Oct 10 12:01 boinc_lockfile
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 16:10 pandaJob.out
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas    975541 Oct 10 16:11 agis_schedconf.cvmfs.json
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas      6858 Oct 10 21:09 init_data.xml
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas 198920807 Oct 10 21:16 HITS.46676269._034700.pool.root.1
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas       531 Oct 10 21:16 boinc_task_state.xml
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas      1053 Oct 10 21:17 memory_monitor_summary.json
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas   1560580 Oct 10 21:17 agis_ddmendpoints.agis.ALL.json
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas    535591 Oct 10 21:17 log.46676269._034700.job.log.tgz.1
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas      7850 Oct 10 21:18 heartbeat.json
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 21:18 boinc_mmap_file
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas        28 Oct 10 21:18 wrapper_checkpoint.txt
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas        96 Oct 10 21:18 pilot_heartbeat.json
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas       820 Oct 10 21:18 pilotlog.txt
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas   2289933 Oct 10 21:18 log.46676269._034700.job.log.1
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas       357 Oct 10 21:18 output.list
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas       620 Oct 10 21:18 runtime_log
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas   2846720 Oct 10 21:18 result.tar.gz
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas       784 Oct 10 21:18 XacMDmS6MR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzkcNDmBmWtXo.diag
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas      8794 Oct 10 21:18 runtime_log.err
[2025-10-10 21:18:52] -rw-r--r--. 1 boincer umatlas     23166 Oct 10 21:18 stderr.txt
[2025-10-10 21:18:52] HITS file was successfully produced:
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas 198920807 Oct 10 21:16 shared/HITS.pool.root.1
[2025-10-10 21:18:52]  *** Contents of shared directory: ***
[2025-10-10 21:18:52] total 411308
[2025-10-10 21:18:52] -rw-r--r--. 3 boincer umatlas 218811995 Oct 10 12:01 ATLAS.root_0
[2025-10-10 21:18:52] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 12:01 start_atlas.sh
[2025-10-10 21:18:52] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 12:01 input.tar.gz
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas 198920807 Oct 10 21:16 HITS.pool.root.1
[2025-10-10 21:18:52] -rw-------. 1 boincer umatlas   2846720 Oct 10 21:18 result.tar.gz
21:18:54 (4181063): run_atlas exited; CPU time 53029.771429
21:18:54 (4181063): called boinc_finish(0)

</stderr_txt>
]]>

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