Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:28:24 (3305605): wrapper (7.7.26015): starting
03:28:24 (3305605): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 03:28:24] Arguments: --nthreads 3
[2025-10-11 03:28:24] Threads: 3
[2025-10-11 03:28:24] Checking for CVMFS
[2025-10-11 03:28:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 03:28:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 03:28:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 03:28:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 03:28:25] 2.9.2.0 2646070 2307 67520 151567 2 56 28612414 36864001 0 130560 0 1722969 99.991 75932 1083 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 03:28:25] CVMFS is ok
[2025-10-11 03:28:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 03:28:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 03:28:25] Further information can be found at the LHC@home message board.
[2025-10-11 03:28:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 03:28:25] Checking for apptainer binary...
[2025-10-11 03:28:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 03:28:25] Running /usr/bin/apptainer --version
[2025-10-11 03:28:25] apptainer version 1.4.1-1.1
[2025-10-11 03:28:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 03:28:25] cosA133a
[2025-10-11 03:28:25] apptainer works
[2025-10-11 03:28:25] Set ATHENA_PROC_NUMBER=3
[2025-10-11 03:28:25] Set ATHENA_CORE_NUMBER=3
[2025-10-11 03:28:25] Starting ATLAS job with PandaID=6837506933
[2025-10-11 03:28:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 04:57:53]  *** The last 200 lines of the pilot log: ***
[2025-10-11 04:57:53]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6837506933/log.46676269._034052.job.log.tgz.1
[2025-10-11 04:57:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/12/log.46676269._034052.job.log.tgz.1
[2025-10-11 04:57:53]  workdir=None
[2025-10-11 04:57:53] ]
[2025-10-11 04:57:53] 2025-10-11 02:57:08,016 | INFO     | transferring file log.46676269._034052.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6837506933/log.46676269._034052.job.log.tgz.1 to /local/data/boinc/
[2025-10-11 04:57:53] 2025-10-11 02:57:08,016 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6837506933/log.46676269._034052.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0340
[2025-10-11 04:57:53] 2025-10-11 02:57:08,028 | INFO     | adding to output.list: log.46676269._034052.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/12/log.46676269._034052.job.log.tg
[2025-10-11 04:57:53] 2025-10-11 02:57:08,028 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 04:57:53] 2025-10-11 02:57:08,028 | INFO     | summary of transferred files:
[2025-10-11 04:57:53] 2025-10-11 02:57:08,028 | INFO     |  -- lfn=log.46676269._034052.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 04:57:53] 2025-10-11 02:57:08,029 | INFO     | stage-out finished correctly
[2025-10-11 04:57:53] 2025-10-11 02:57:08,256 | INFO     | time since job start (5310s) is within the limit (172800.0s)
[2025-10-11 04:57:53] 2025-10-11 02:57:09,041 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 04:57:53] 2025-10-11 02:57:10,167 | INFO     | monitor loop #410: job 0:6837506933 is in state 'finished'
[2025-10-11 04:57:53] 2025-10-11 02:57:10,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 04:57:53] 2025-10-11 02:57:10,263 | INFO     | time since job start (5312s) is within the limit (172800.0s)
[2025-10-11 04:57:53] 2025-10-11 02:57:11,350 | INFO     | job 6837506933 has state=finished
[2025-10-11 04:57:53] 2025-10-11 02:57:11,351 | INFO     | preparing for final server update for job 6837506933 in state='finished'
[2025-10-11 04:57:53] 2025-10-11 02:57:11,937 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-11 04:57:53] 2025-10-11 02:57:11,938 | INFO     | this job has now completed (state=finished)
[2025-10-11 04:57:53] 2025-10-11 02:57:11,938 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 04:57:53] 2025-10-11 02:57:11,939 | INFO     | log transfer has been attempted: DONE
[2025-10-11 04:57:53] 2025-10-11 02:57:11,939 | INFO     | job 6837506933 has finished - writing final server update
[2025-10-11 04:57:53] 2025-10-11 02:57:11,939 | INFO     | total number of processed events: 400 (read)
[2025-10-11 04:57:53] 2025-10-11 02:57:11,939 | INFO     | executing command: lscpu
[2025-10-11 04:57:53] 2025-10-11 02:57:11,951 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 04:57:53] 2025-10-11 02:57:12,268 | INFO     | time since job start (5314s) is within the limit (172800.0s)
[2025-10-11 04:57:53] 2025-10-11 02:57:12,671 | INFO     | monitor loop #411: job 0:6837506933 is in state 'finished'
[2025-10-11 04:57:53] 2025-10-11 02:57:12,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 04:57:53] 2025-10-11 02:57:14,273 | INFO     | time since job start (5316s) is within the limit (172800.0s)
[2025-10-11 04:57:53] 2025-10-11 02:57:15,173 | INFO     | monitor loop #412: job 0:6837506933 is in state 'finished'
[2025-10-11 04:57:53] 2025-10-11 02:57:15,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 04:57:53] 2025-10-11 02:57:16,280 | INFO     | time since job start (5318s) is within the limit (172800.0s)
[2025-10-11 04:57:53] 2025-10-11 02:57:17,676 | INFO     | monitor loop #413: job 0:6837506933 is in state 'finished'
[2025-10-11 04:57:53] 2025-10-11 02:57:17,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 04:57:53] 2025-10-11 02:57:18,285 | INFO     | time since job start (5320s) is within the limit (172800.0s)
[2025-10-11 04:57:53] 2025-10-11 02:57:19,696 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 04:57:53] 2025-10-11 02:57:19,697 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4347.669416666667
[2025-10-11 04:57:53] 2025-10-11 02:57:19,698 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6837506933/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 04:57:53] 2025-10-11 02:57:19,699 | INFO     | extracted standard info from prmon json
[2025-10-11 04:57:53] 2025-10-11 02:57:19,699 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 04:57:53] 2025-10-11 02:57:19,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 04:57:53] 2025-10-11 02:57:19,699 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 04:57:53] 2025-10-11 02:57:19,699 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | fitting pss+swap vs Time
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | sum of square deviations: 158737860.0
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | sum of deviations: -13032314500.0
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | mean x: 1760148858.5
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | mean y: 2467253.875
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | -- intersect: 144509981030.28598
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | intersect: 144509981030.28598
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | chi2: 0.06472008239950551
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | -- intersect: 144509981030.28598
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | current memory leak: -82.10 B/s (using 80 data points, chi2=0.06)
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | could have reported an average CPU frequency of 4326 MHz (6 samples)
[2025-10-11 04:57:53] 2025-10-11 02:57:19,700 | INFO     | ..............................
[2025-10-11 04:57:53] 2025-10-11 02:57:19,701 | INFO     | . Timing measurements:
[2025-10-11 04:57:53] 2025-10-11 02:57:19,701 | INFO     | . get job = 0 s
[2025-10-11 04:57:53] 2025-10-11 02:57:19,701 | INFO     | . initial setup = 1 s
[2025-10-11 04:57:53] 2025-10-11 02:57:19,701 | INFO     | . payload setup = 6 s
[2025-10-11 04:57:53] 2025-10-11 02:57:19,701 | INFO     | . stage-in = 0 s
[2025-10-11 04:57:53] 2025-10-11 02:57:19,701 | INFO     | . payload execution = 5286 s
[2025-10-11 04:57:53] 2025-10-11 02:57:19,701 | INFO     | . stage-out = 0 s
[2025-10-11 04:57:53] 2025-10-11 02:57:19,701 | INFO     | . log creation = 0 s
[2025-10-11 04:57:53] 2025-10-11 02:57:19,701 | INFO     | ..............................
[2025-10-11 04:57:53] 2025-10-11 02:57:19,958 | INFO     | 
[2025-10-11 04:57:53] 2025-10-11 02:57:19,959 | INFO     | job summary report
[2025-10-11 04:57:53] 2025-10-11 02:57:19,959 | INFO     | --------------------------------------------------
[2025-10-11 04:57:53] 2025-10-11 02:57:19,959 | INFO     | PanDA job id: 6837506933
[2025-10-11 04:57:53] 2025-10-11 02:57:19,959 | INFO     | task id: 46676269
[2025-10-11 04:57:53] 2025-10-11 02:57:19,959 | INFO     | errors: (none)
[2025-10-11 04:57:53] 2025-10-11 02:57:19,959 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 04:57:53] 2025-10-11 02:57:19,959 | INFO     | pilot state: finished 
[2025-10-11 04:57:53] 2025-10-11 02:57:19,960 | INFO     | transexitcode: 0
[2025-10-11 04:57:53] 2025-10-11 02:57:19,960 | INFO     | exeerrorcode: 0
[2025-10-11 04:57:53] 2025-10-11 02:57:19,960 | INFO     | exeerrordiag: 
[2025-10-11 04:57:53] 2025-10-11 02:57:19,960 | INFO     | exitcode: 0
[2025-10-11 04:57:53] 2025-10-11 02:57:19,960 | INFO     | exitmsg: OK
[2025-10-11 04:57:53] 2025-10-11 02:57:19,960 | INFO     | cpuconsumptiontime: 15113 s
[2025-10-11 04:57:53] 2025-10-11 02:57:19,960 | INFO     | nevents: 400
[2025-10-11 04:57:53] 2025-10-11 02:57:19,960 | INFO     | neventsw: 0
[2025-10-11 04:57:53] 2025-10-11 02:57:19,961 | INFO     | pid: 3315789
[2025-10-11 04:57:53] 2025-10-11 02:57:19,961 | INFO     | pgrp: 3315789
[2025-10-11 04:57:53] 2025-10-11 02:57:19,961 | INFO     | corecount: 3
[2025-10-11 04:57:53] 2025-10-11 02:57:19,961 | INFO     | event service: False
[2025-10-11 04:57:53] 2025-10-11 02:57:19,961 | INFO     | sizes: {0: 2348860, 6: 2349122, 11: 2349150, 5293: 2375746, 5294: 2384750, 5295: 2384806, 5305: 2385128}
[2025-10-11 04:57:53] 2025-10-11 02:57:19,961 | INFO     | --------------------------------------------------
[2025-10-11 04:57:53] 2025-10-11 02:57:19,961 | INFO     | 
[2025-10-11 04:57:53] 2025-10-11 02:57:19,962 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-11 04:57:53] 2025-10-11 02:57:19,974 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,974 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,974 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,974 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,974 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | job 6837506933 has completed (purged errors)
[2025-10-11 04:57:53] 2025-10-11 02:57:19,975 | INFO     | overall cleanup function is called
[2025-10-11 04:57:53] 2025-10-11 02:57:20,982 | INFO     | --- collectZombieJob: --- 10, [3315789]
[2025-10-11 04:57:53] 2025-10-11 02:57:20,982 | INFO     | zombie collector waiting for pid 3315789
[2025-10-11 04:57:53] 2025-10-11 02:57:20,982 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 04:57:53] 2025-10-11 02:57:20,982 | INFO     | collected zombie processes
[2025-10-11 04:57:53] 2025-10-11 02:57:20,983 | INFO     | will attempt to kill all subprocesses of pid=3315789
[2025-10-11 04:57:53] 2025-10-11 02:57:21,019 | INFO     | process IDs to be killed: [3315789] (in reverse order)
[2025-10-11 04:57:53] 2025-10-11 02:57:21,044 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 04:57:53] 2025-10-11 02:57:21,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 04:57:53] 2025-10-11 02:57:21,046 | INFO     | did not find any defunct processes belonging to 3315789
[2025-10-11 04:57:53] 2025-10-11 02:57:21,046 | INFO     | did not find any defunct processes belonging to 3315789
[2025-10-11 04:57:53] 2025-10-11 02:57:21,047 | INFO     | ready for new job
[2025-10-11 04:57:53] 2025-10-11 02:57:21,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 04:57:53] 2025-10-11 02:57:21,047 | INFO     | ***************************************
[2025-10-11 04:57:53] 2025-10-11 02:57:21,047 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 04:57:53] 2025-10-11 02:57:21,047 | INFO     | ***************************************
[2025-10-11 04:57:53] 2025-10-11 02:57:21,047 | INFO     | 
[2025-10-11 04:57:53] 2025-10-11 02:57:21,048 | INFO     | architecture information:
[2025-10-11 04:57:53] 2025-10-11 02:57:21,048 | INFO     | executing command: cat /etc/os-release
[2025-10-11 04:57:53] 2025-10-11 02:57:21,057 | INFO     | cat /etc/os-release:
[2025-10-11 04:57:53] NAME="CentOS Linux"
[2025-10-11 04:57:53] VERSION="7 (Core)"
[2025-10-11 04:57:53] ID="centos"
[2025-10-11 04:57:53] ID_LIKE="rhel fedora"
[2025-10-11 04:57:53] VERSION_ID="7"
[2025-10-11 04:57:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 04:57:53] ANSI_COLOR="0;31"
[2025-10-11 04:57:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 04:57:53] HOME_URL="https://www.centos.org/"
[2025-10-11 04:57:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 04:57:53] 
[2025-10-11 04:57:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 04:57:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 04:57:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 04:57:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 04:57:53] 
[2025-10-11 04:57:53] 2025-10-11 02:57:21,057 | INFO     | ***************************************
[2025-10-11 04:57:53] 2025-10-11 02:57:21,560 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 04:57:53] 2025-10-11 02:57:21,573 | INFO     | sufficient remaining disk space (331459067904 B)
[2025-10-11 04:57:53] 2025-10-11 02:57:21,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 04:57:53] 2025-10-11 02:57:21,573 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 04:57:53] 2025-10-11 02:57:21,573 | INFO     | update_server=False
[2025-10-11 04:57:53] 2025-10-11 02:57:21,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 04:57:53] 2025-10-11 02:57:21,573 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 04:57:53] 2025-10-11 02:57:21,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 04:57:53] 2025-10-11 02:57:21,573 | INFO     | aborting loop
[2025-10-11 04:57:53] 2025-10-11 02:57:21,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 04:57:53] 2025-10-11 02:57:21,617 | INFO     | all data control threads have been joined
[2025-10-11 04:57:53] 2025-10-11 02:57:21,784 | INFO     | all payload control threads have been joined
[2025-10-11 04:57:53] 2025-10-11 02:57:22,579 | INFO     | [job] retrieve thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:22,579 | INFO     | [job] queue monitor thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:22,580 | INFO     | [job] job monitor thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:22,620 | INFO     | [payload] failed_post thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:22,621 | INFO     | [data] control thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:22,622 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:22,773 | INFO     | all job control threads have been joined
[2025-10-11 04:57:53] 2025-10-11 02:57:22,790 | INFO     | [payload] control thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:23,083 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:23,183 | INFO     | [payload] validate_post thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:23,530 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:23,580 | INFO     | [data] copytool_out thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:23,779 | INFO     | [job] control thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:23,839 | INFO     | [data] copytool_in thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:23,913 | INFO     | [job] validate thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:24,085 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 04:57:53] 2025-10-11 02:57:28,093 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:32,468 | INFO     | job.realtimelogging is not enabled
[2025-10-11 04:57:53] 2025-10-11 02:57:33,473 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 04:57:53] 2025-10-11 02:57:46,266 | INFO     | [monitor] cgroup control has ended
[2025-10-11 04:57:53] 2025-10-11 02:57:47,961 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139767690921792)>', '<ExcThread(monitor, started 139767178041088)>']
[2025-10-11 04:57:53] 2025-10-11 02:57:51,394 | INFO     | PID=3309343 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 04:57:53] 2025-10-11 02:57:51,394 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 04:57:53] 2025-10-11 02:57:51,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 04:57:53] 2025-10-11 02:57:51,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 04:57:53] 2025-10-11 02:57:51,395 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 04:57:53] 2025-10-11 02:57:51,395 | INFO     | [monitor] control thread has ended
[2025-10-11 04:57:53] 2025-10-11 02:57:52,987 | INFO     | all workflow threads have been joined
[2025-10-11 04:57:53] 2025-10-11 02:57:52,987 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 04:57:53] 2025-10-11 02:57:52,988 | INFO     | traces error code: 0
[2025-10-11 04:57:53] 2025-10-11 02:57:52,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 04:57:53] 2025-10-11 02:57:53,035 [wrapper] ==== pilot stdout END ====
[2025-10-11 04:57:53] 2025-10-11 02:57:53,038 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 04:57:53] 2025-10-11 02:57:53,041 [wrapper] pilotpid: 3309343
[2025-10-11 04:57:53] 2025-10-11 02:57:53,044 [wrapper] Pilot exit status: 0
[2025-10-11 04:57:53] 2025-10-11 02:57:53,052 [wrapper] pandaids: 6837506933
[2025-10-11 04:57:53] 2025-10-11 02:57:53,068 [wrapper] cleanup supervisor_pilot 3327618 3309344
[2025-10-11 04:57:53] 2025-10-11 02:57:53,070 [wrapper] Test setup, not cleaning
[2025-10-11 04:57:53] 2025-10-11 02:57:53,073 [wrapper] apfmon messages muted
[2025-10-11 04:57:53] 2025-10-11 02:57:53,076 [wrapper] ==== wrapper stdout END ====
[2025-10-11 04:57:53] 2025-10-11 02:57:53,078 [wrapper] ==== wrapper stderr END ====
[2025-10-11 04:57:53]  *** Error codes and diagnostics ***
[2025-10-11 04:57:53]     "exeErrorCode": 0,
[2025-10-11 04:57:53]     "exeErrorDiag": "",
[2025-10-11 04:57:53]     "pilotErrorCode": 0,
[2025-10-11 04:57:53]     "pilotErrorDiag": "",
[2025-10-11 04:57:53]  *** Listing of results directory ***
[2025-10-11 04:57:53] total 405412
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc    557409 Oct 10 08:35 pilot3.tar.gz
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc      5112 Oct 10 08:47 queuedata.json
[2025-10-11 04:57:53] -rwx------ 1 boinc boinc     36292 Oct 10 08:47 runpilot2-wrapper.sh
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc       100 Oct 11 03:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 04:57:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 03:28 run_atlas
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc       105 Oct 11 03:28 job.xml
[2025-10-11 04:57:53] -rw-r--r-- 2 boinc boinc 220128300 Oct 11 03:28 EVNT.46676267._001385.pool.root.1
[2025-10-11 04:57:53] -rw-r--r-- 2 boinc boinc    569676 Oct 11 03:28 input.tar.gz
[2025-10-11 04:57:53] -rw-r--r-- 2 boinc boinc     15120 Oct 11 03:28 start_atlas.sh
[2025-10-11 04:57:53] drwxrwx--x 2 boinc boinc      4096 Oct 11 03:28 shared
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc         0 Oct 11 03:28 boinc_setup_complete
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc      6200 Oct 11 03:28 init_data.xml
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc         0 Oct 11 03:28 boinc_lockfile
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc      2550 Oct 11 03:28 pandaJob.out
[2025-10-11 04:57:53] -rw------- 1 boinc boinc    975517 Oct 11 03:28 agis_schedconf.cvmfs.json
[2025-10-11 04:57:53] -rw------- 1 boinc boinc   1560580 Oct 11 03:28 agis_ddmendpoints.agis.ALL.json
[2025-10-11 04:57:53] drwx------ 5 boinc boinc      4096 Oct 11 03:28 pilot3
[2025-10-11 04:57:53] -rw------- 1 boinc boinc 189014094 Oct 11 04:56 HITS.46676269._034052.pool.root.1
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc       529 Oct 11 04:56 boinc_task_state.xml
[2025-10-11 04:57:53] -rw------- 1 boinc boinc        95 Oct 11 04:57 pilot_heartbeat.json
[2025-10-11 04:57:53] -rw------- 1 boinc boinc      1018 Oct 11 04:57 memory_monitor_summary.json
[2025-10-11 04:57:53] -rw------- 1 boinc boinc    270238 Oct 11 04:57 log.46676269._034052.job.log.tgz.1
[2025-10-11 04:57:53] -rw------- 1 boinc boinc      7767 Oct 11 04:57 heartbeat.json
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc        27 Oct 11 04:57 wrapper_checkpoint.txt
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc      8192 Oct 11 04:57 boinc_mmap_file
[2025-10-11 04:57:53] -rw------- 1 boinc boinc      4824 Oct 11 04:57 pilotlog.txt
[2025-10-11 04:57:53] -rw------- 1 boinc boinc    777220 Oct 11 04:57 log.46676269._034052.job.log.1
[2025-10-11 04:57:53] -rw------- 1 boinc boinc       357 Oct 11 04:57 output.list
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc       620 Oct 11 04:57 runtime_log
[2025-10-11 04:57:53] -rw------- 1 boinc boinc   1064960 Oct 11 04:57 result.tar.gz
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc      8787 Oct 11 04:57 runtime_log.err
[2025-10-11 04:57:53] -rw------- 1 boinc boinc       660 Oct 11 04:57 rIcMDmp5LR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpdcNDm7psaEm.diag
[2025-10-11 04:57:53] -rw-r--r-- 1 boinc boinc     22250 Oct 11 04:57 stderr.txt
[2025-10-11 04:57:53] HITS file was successfully produced:
[2025-10-11 04:57:53] -rw------- 1 boinc boinc 189014094 Oct 11 04:56 shared/HITS.pool.root.1
[2025-10-11 04:57:53]  *** Contents of shared directory: ***
[2025-10-11 04:57:53] total 401184
[2025-10-11 04:57:53] -rw-r--r-- 2 boinc boinc 220128300 Oct 11 03:28 ATLAS.root_0
[2025-10-11 04:57:53] -rw-r--r-- 2 boinc boinc    569676 Oct 11 03:28 input.tar.gz
[2025-10-11 04:57:53] -rw-r--r-- 2 boinc boinc     15120 Oct 11 03:28 start_atlas.sh
[2025-10-11 04:57:53] -rw------- 1 boinc boinc 189014094 Oct 11 04:56 HITS.pool.root.1
[2025-10-11 04:57:53] -rw------- 1 boinc boinc   1064960 Oct 11 04:57 result.tar.gz
04:57:54 (3305605): run_atlas exited; CPU time 15139.839105
04:57:54 (3305605): called boinc_finish(0)

</stderr_txt>
]]>

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