Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:45:17 (905867): wrapper (7.7.26015): starting
11:45:17 (905867): wrapper: running run_atlas (--nthreads 10)
[2025-10-10 11:45:17] Arguments: --nthreads 10
[2025-10-10 11:45:17] Threads: 10
[2025-10-10 11:45:17] Checking for CVMFS
[2025-10-10 11:45:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 11:45:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 11:45:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 11:45:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 11:45:18] 2.13.2.0 3269412 33044 356372 151553 2 265 27031079 40960000 46858 16776704 0 411871142 99.837 175807057 37049 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 11:45:18] CVMFS is ok
[2025-10-10 11:45:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 11:45:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 11:45:18] Further information can be found at the LHC@home message board.
[2025-10-10 11:45:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 11:45:18] Checking for apptainer binary...
[2025-10-10 11:45:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 11:45:18] Running /usr/bin/apptainer --version
[2025-10-10 11:45:18] apptainer version 1.4.3-1.el9
[2025-10-10 11:45:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 11:45:18] c8-16-2.aglt2.org
[2025-10-10 11:45:18] apptainer works
[2025-10-10 11:45:18] Set ATHENA_PROC_NUMBER=10
[2025-10-10 11:45:18] Set ATHENA_CORE_NUMBER=10
[2025-10-10 11:45:18] Starting ATLAS job with PandaID=6837448817
[2025-10-10 11:45:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 12:40:42]  *** The last 200 lines of the pilot log: ***
[2025-10-10 12:40:42] 2025-10-10 16:39:18,581 | INFO     | monitor loop #196: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:18,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:19,623 | INFO     | PID=918499 has CPU usage=17.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 12:40:42] 2025-10-10 16:39:19,623 | INFO     | .. there are 75 such processes running
[2025-10-10 12:40:42] 2025-10-10 16:39:20,624 | INFO     | time since job start (3230s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:21,088 | INFO     | monitor loop #197: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:21,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:22,635 | INFO     | time since job start (3232s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:23,597 | INFO     | monitor loop #198: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:23,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:24,642 | INFO     | time since job start (3234s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:26,106 | INFO     | monitor loop #199: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:26,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:26,650 | INFO     | time since job start (3236s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:28,613 | INFO     | monitor loop #200: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:28,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:28,657 | INFO     | time since job start (3238s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:30,665 | INFO     | time since job start (3240s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:31,122 | INFO     | monitor loop #201: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:31,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:32,673 | INFO     | time since job start (3242s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:33,627 | INFO     | monitor loop #202: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:33,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:34,689 | INFO     | time since job start (3244s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:36,135 | INFO     | monitor loop #203: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:36,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:36,697 | INFO     | time since job start (3246s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:38,653 | INFO     | monitor loop #204: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:38,653 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:38,707 | INFO     | time since job start (3248s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:40,726 | INFO     | time since job start (3250s) is within the limit (172800.0s)
[2025-10-10 12:40:42] 2025-10-10 16:39:40,726 | INFO     | 3253s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-10 12:40:42] 2025-10-10 16:39:41,166 | INFO     | monitor loop #205: job 0:6837448817 is in state 'finished'
[2025-10-10 12:40:42] 2025-10-10 16:39:41,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:40:42] 2025-10-10 16:39:41,906 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-10 12:40:42] 2025-10-10 16:39:42,006 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.990117187496
[2025-10-10 12:40:42] 2025-10-10 16:39:42,183 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6837448817/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 12:40:42] 2025-10-10 16:39:42,183 | INFO     | extracted standard info from prmon json
[2025-10-10 12:40:42] 2025-10-10 16:39:42,183 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 12:40:42] 2025-10-10 16:39:42,183 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 12:40:42] 2025-10-10 16:39:42,184 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 12:40:42] 2025-10-10 16:39:42,184 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 12:40:42] 2025-10-10 16:39:42,184 | INFO     | fitting pss+swap vs Time
[2025-10-10 12:40:42] 2025-10-10 16:39:42,185 | INFO     | sum of square deviations: 30168007.5
[2025-10-10 12:40:42] 2025-10-10 16:39:42,213 | INFO     | sum of deviations: -416559240.0
[2025-10-10 12:40:42] 2025-10-10 16:39:42,213 | INFO     | mean x: 1760112834.5
[2025-10-10 12:40:42] 2025-10-10 16:39:42,213 | INFO     | mean y: 2262486.695652174
[2025-10-10 12:40:42] 2025-10-10 16:39:42,213 | INFO     | -- intersect: 24305865058.18022
[2025-10-10 12:40:42] 2025-10-10 16:39:42,213 | INFO     | intersect: 24305865058.18022
[2025-10-10 12:40:42] 2025-10-10 16:39:42,213 | INFO     | chi2: 0.011351576784803578
[2025-10-10 12:40:42] 2025-10-10 16:39:42,213 | INFO     | -- intersect: 24305865058.18022
[2025-10-10 12:40:42] 2025-10-10 16:39:42,213 | INFO     | current memory leak: -13.81 B/s (using 46 data points, chi2=0.01)
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | could have reported an average CPU frequency of 3767 MHz (5 samples)
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | ..............................
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | . Timing measurements:
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | . get job = 0 s
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | . initial setup = 2 s
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | . payload setup = 5 s
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | . stage-in = 0 s
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | . payload execution = 3195 s
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | . stage-out = 1 s
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | . log creation = 0 s
[2025-10-10 12:40:42] 2025-10-10 16:39:42,214 | INFO     | ..............................
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | 
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | job summary report
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | --------------------------------------------------
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | PanDA job id: 6837448817
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | task id: 46676269
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | errors: (none)
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | pilot state: finished 
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | transexitcode: 0
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | exeerrorcode: 0
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | exeerrordiag: 
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | exitcode: 0
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | exitmsg: OK
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | cpuconsumptiontime: 23115 s
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | nevents: 400
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | neventsw: 0
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | pid: 938293
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | pgrp: 938293
[2025-10-10 12:40:42] 2025-10-10 16:39:42,581 | INFO     | corecount: 10
[2025-10-10 12:40:42] 2025-10-10 16:39:42,582 | INFO     | event service: False
[2025-10-10 12:40:42] 2025-10-10 16:39:42,582 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 11: 2349175, 3205: 2374702, 3207: 2383700, 3208: 2383884, 3237: 2384110}
[2025-10-10 12:40:42] 2025-10-10 16:39:42,582 | INFO     | --------------------------------------------------
[2025-10-10 12:40:42] 2025-10-10 16:39:42,582 | INFO     | 
[2025-10-10 12:40:42] 2025-10-10 16:39:42,582 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-10-10 12:40:42] 2025-10-10 16:39:42,713 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,713 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,713 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,713 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,713 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,713 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,713 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | job 6837448817 has completed (purged errors)
[2025-10-10 12:40:42] 2025-10-10 16:39:42,714 | INFO     | overall cleanup function is called
[2025-10-10 12:40:42] 2025-10-10 16:39:43,759 | INFO     | --- collectZombieJob: --- 10, [938293]
[2025-10-10 12:40:42] 2025-10-10 16:39:43,761 | INFO     | zombie collector waiting for pid 938293
[2025-10-10 12:40:42] 2025-10-10 16:39:43,762 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 12:40:42] 2025-10-10 16:39:43,762 | INFO     | collected zombie processes
[2025-10-10 12:40:42] 2025-10-10 16:39:43,762 | INFO     | will attempt to kill all subprocesses of pid=938293
[2025-10-10 12:40:42] 2025-10-10 16:39:45,326 | INFO     | PID=918499 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 12:40:42] 2025-10-10 16:39:45,326 | INFO     | .. there are 75 such processes running
[2025-10-10 12:40:42] 2025-10-10 16:39:46,052 | INFO     | process IDs to be killed: [938293] (in reverse order)
[2025-10-10 12:40:42] 2025-10-10 16:39:46,556 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 12:40:42] 2025-10-10 16:39:46,556 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 12:40:42] 2025-10-10 16:39:46,658 | INFO     | did not find any defunct processes belonging to 938293
[2025-10-10 12:40:42] 2025-10-10 16:39:46,756 | INFO     | did not find any defunct processes belonging to 938293
[2025-10-10 12:40:42] 2025-10-10 16:39:46,756 | INFO     | ready for new job
[2025-10-10 12:40:42] 2025-10-10 16:39:46,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 12:40:42] 2025-10-10 16:39:46,776 | INFO     | ***************************************
[2025-10-10 12:40:42] 2025-10-10 16:39:46,776 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 12:40:42] 2025-10-10 16:39:46,776 | INFO     | ***************************************
[2025-10-10 12:40:42] 2025-10-10 16:39:46,776 | INFO     | 
[2025-10-10 12:40:42] 2025-10-10 16:39:46,805 | INFO     | architecture information:
[2025-10-10 12:40:42] 2025-10-10 16:39:46,805 | INFO     | executing command: cat /etc/os-release
[2025-10-10 12:40:42] 2025-10-10 16:39:46,901 | INFO     | cat /etc/os-release:
[2025-10-10 12:40:42] NAME="CentOS Linux"
[2025-10-10 12:40:42] VERSION="7 (Core)"
[2025-10-10 12:40:42] ID="centos"
[2025-10-10 12:40:42] ID_LIKE="rhel fedora"
[2025-10-10 12:40:42] VERSION_ID="7"
[2025-10-10 12:40:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 12:40:42] ANSI_COLOR="0;31"
[2025-10-10 12:40:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 12:40:42] HOME_URL="https://www.centos.org/"
[2025-10-10 12:40:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 12:40:42] 
[2025-10-10 12:40:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 12:40:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 12:40:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 12:40:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 12:40:42] 
[2025-10-10 12:40:42] 2025-10-10 16:39:46,901 | INFO     | ***************************************
[2025-10-10 12:40:42] 2025-10-10 16:39:47,412 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-10-10 12:40:42] 2025-10-10 16:39:47,447 | INFO     | sufficient remaining disk space (168295399424 B)
[2025-10-10 12:40:42] 2025-10-10 16:39:47,447 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 12:40:42] 2025-10-10 16:39:47,447 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 12:40:42] 2025-10-10 16:39:47,447 | INFO     | update_server=False
[2025-10-10 12:40:42] 2025-10-10 16:39:47,447 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 12:40:42] 2025-10-10 16:39:47,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 12:40:42] 2025-10-10 16:39:47,469 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:40:42] 2025-10-10 16:39:47,474 | INFO     | aborting loop
[2025-10-10 12:40:42] 2025-10-10 16:39:47,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:40:42] 2025-10-10 16:39:48,021 | INFO     | all data control threads have been joined
[2025-10-10 12:40:42] 2025-10-10 16:39:48,452 | INFO     | [job] retrieve thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:48,479 | INFO     | [job] job monitor thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:48,508 | INFO     | [job] queue monitor thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:48,529 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 12:40:42] 2025-10-10 16:39:48,597 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:48,718 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:48,814 | INFO     | all job control threads have been joined
[2025-10-10 12:40:42] 2025-10-10 16:39:48,871 | INFO     | all payload control threads have been joined
[2025-10-10 12:40:42] 2025-10-10 16:39:48,983 | INFO     | [payload] failed_post thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:49,027 | INFO     | [data] control thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:49,244 | INFO     | [job] validate thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:49,297 | INFO     | [data] copytool_in thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:49,386 | INFO     | [payload] validate_post thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:49,398 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:49,602 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:49,819 | INFO     | [job] control thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:49,879 | INFO     | [payload] control thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:50,548 | INFO     | [data] copytool_out thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:39:51,488 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 12:40:42] 2025-10-10 16:40:18,526 | INFO     | PID=918499 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 12:40:42] 2025-10-10 16:40:18,527 | INFO     | .. there are 75 such processes running
[2025-10-10 12:40:42] 2025-10-10 16:40:18,528 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 12:40:42] 2025-10-10 16:40:18,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 12:40:42] 2025-10-10 16:40:18,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 12:40:42] 2025-10-10 16:40:35,479 | INFO     | [monitor] cgroup control has ended
[2025-10-10 12:40:42] 2025-10-10 16:40:35,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139715618252608)>', '<ExcThread(monitor, started 139715126740736)>']
[2025-10-10 12:40:42] 2025-10-10 16:40:36,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 12:40:42] 2025-10-10 16:40:36,678 | INFO     | [monitor] control thread has ended
[2025-10-10 12:40:42] 2025-10-10 16:40:40,984 | INFO     | all workflow threads have been joined
[2025-10-10 12:40:42] 2025-10-10 16:40:40,985 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 12:40:42] 2025-10-10 16:40:40,985 | INFO     | traces error code: 0
[2025-10-10 12:40:42] 2025-10-10 16:40:40,986 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 12:40:42] 2025-10-10 16:40:41,302 [wrapper] ==== pilot stdout END ====
[2025-10-10 12:40:42] 2025-10-10 16:40:41,323 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 12:40:42] 2025-10-10 16:40:41,342 [wrapper] pilotpid: 918499
[2025-10-10 12:40:42] 2025-10-10 16:40:41,359 [wrapper] Pilot exit status: 0
[2025-10-10 12:40:42] 2025-10-10 16:40:41,463 [wrapper] pandaids: 6837448817
[2025-10-10 12:40:42] 2025-10-10 16:40:41,870 [wrapper] cleanup supervisor_pilot 1417367 918500
[2025-10-10 12:40:42] 2025-10-10 16:40:41,887 [wrapper] Test setup, not cleaning
[2025-10-10 12:40:42] 2025-10-10 16:40:41,909 [wrapper] apfmon messages muted
[2025-10-10 12:40:42] 2025-10-10 16:40:41,925 [wrapper] ==== wrapper stdout END ====
[2025-10-10 12:40:42] 2025-10-10 16:40:41,943 [wrapper] ==== wrapper stderr END ====
[2025-10-10 12:40:42]  *** Error codes and diagnostics ***
[2025-10-10 12:40:42]     "exeErrorCode": 0,
[2025-10-10 12:40:42]     "exeErrorDiag": "",
[2025-10-10 12:40:42]     "pilotErrorCode": 0,
[2025-10-10 12:40:42]     "pilotErrorDiag": "",
[2025-10-10 12:40:42]  *** Listing of results directory ***
[2025-10-10 12:40:42] total 416712
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 00:44 pilot3.tar.gz
[2025-10-10 12:40:42] -rwx------. 1 boincer umatlas     36292 Oct 10 01:08 runpilot2-wrapper.sh
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 01:08 queuedata.json
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas       100 Oct 10 11:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 12:40:42] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 11:45 run_atlas
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas       105 Oct 10 11:45 job.xml
[2025-10-10 12:40:42] -rw-r--r--. 2 boincer umatlas 220751548 Oct 10 11:45 EVNT.46676267._001334.pool.root.1
[2025-10-10 12:40:42] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 11:45 start_atlas.sh
[2025-10-10 12:40:42] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 11:45 shared
[2025-10-10 12:40:42] -rw-r--r--. 2 boincer umatlas    569678 Oct 10 11:45 input.tar.gz
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas         0 Oct 10 11:45 boinc_lockfile
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 11:45 pandaJob.out
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas    975533 Oct 10 11:45 agis_schedconf.cvmfs.json
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas   1560580 Oct 10 11:45 agis_ddmendpoints.agis.ALL.json
[2025-10-10 12:40:42] drwx------. 5 boincer umatlas      4096 Oct 10 11:45 pilot3
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas      7162 Oct 10 12:37 init_data.xml
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas 200491828 Oct 10 12:38 HITS.46676269._032767.pool.root.1
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas       529 Oct 10 12:38 boinc_task_state.xml
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas      1035 Oct 10 12:39 memory_monitor_summary.json
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas    338383 Oct 10 12:39 log.46676269._032767.job.log.tgz.1
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas      7776 Oct 10 12:39 heartbeat.json
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas        95 Oct 10 12:39 pilot_heartbeat.json
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 12:40 boinc_mmap_file
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas        27 Oct 10 12:40 wrapper_checkpoint.txt
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas      4824 Oct 10 12:40 pilotlog.txt
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas    445295 Oct 10 12:40 log.46676269._032767.job.log.1
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas       357 Oct 10 12:40 output.list
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas       620 Oct 10 12:40 runtime_log
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas    798720 Oct 10 12:40 result.tar.gz
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas       651 Oct 10 12:40 Sl6LDmVXKR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdOcNDm7bcQXn.diag
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas      8700 Oct 10 12:40 runtime_log.err
[2025-10-10 12:40:42] -rw-r--r--. 1 boincer umatlas     22392 Oct 10 12:40 stderr.txt
[2025-10-10 12:40:42] HITS file was successfully produced:
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas 200491828 Oct 10 12:38 shared/HITS.pool.root.1
[2025-10-10 12:40:42]  *** Contents of shared directory: ***
[2025-10-10 12:40:42] total 412740
[2025-10-10 12:40:42] -rw-r--r--. 2 boincer umatlas 220751548 Oct 10 11:45 ATLAS.root_0
[2025-10-10 12:40:42] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 11:45 start_atlas.sh
[2025-10-10 12:40:42] -rw-r--r--. 2 boincer umatlas    569678 Oct 10 11:45 input.tar.gz
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas 200491828 Oct 10 12:38 HITS.pool.root.1
[2025-10-10 12:40:42] -rw-------. 1 boincer umatlas    798720 Oct 10 12:40 result.tar.gz
12:40:43 (905867): run_atlas exited; CPU time 23210.749701
12:40:43 (905867): called boinc_finish(0)

</stderr_txt>
]]>

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