Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
15:50:32 (2382436): wrapper (7.7.26015): starting
15:50:32 (2382436): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 15:50:32] Arguments: --nthreads 12
[2025-10-10 15:50:32] Threads: 12
[2025-10-10 15:50:32] Checking for CVMFS
[2025-10-10 15:50:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 15:50:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 15:50:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 15:50:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 15:50:32] 2.11.0.0 3299214 384 78300 151553 1 188 4898146 6144000 9576 130560 0 7633753 99.999 17488 228 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-10 15:50:32] CVMFS is ok
[2025-10-10 15:50:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 15:50:32] Checking for apptainer binary...
[2025-10-10 15:50:32] apptainer is not installed, using version from CVMFS
[2025-10-10 15:50:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 15:50:33] radiat0r
[2025-10-10 15:50:33] apptainer works
[2025-10-10 15:50:33] Set ATHENA_PROC_NUMBER=12
[2025-10-10 15:50:33] Set ATHENA_CORE_NUMBER=12
[2025-10-10 15:50:33] Starting ATLAS job with PandaID=6837508468
[2025-10-10 15:50:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 16:44:10]  *** The last 200 lines of the pilot log: ***
[2025-10-10 16:44:10]  surl=/var/lib/boinc/slots/16/PanDA_Pilot-6837508468/log.46676269._034339.job.log.tgz.1
[2025-10-10 16:44:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/bc/log.46676269._034339.job.log.tgz.1
[2025-10-10 16:44:10]  workdir=None
[2025-10-10 16:44:10] ]
[2025-10-10 16:44:10] 2025-10-10 16:43:28,755 | INFO     | transferring file log.46676269._034339.job.log.tgz.1 from /var/lib/boinc/slots/16/PanDA_Pilot-6837508468/log.46676269._034339.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-10 16:44:10] 2025-10-10 16:43:28,756 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/16/PanDA_Pilot-6837508468/log.46676269._034339.job.log.tgz.1 /var/lib/boinc/slots/16/log.46676269._034339.j
[2025-10-10 16:44:10] 2025-10-10 16:43:28,778 | INFO     | adding to output.list: log.46676269._034339.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/bc/log.46676269._034339.job.log.tg
[2025-10-10 16:44:10] 2025-10-10 16:43:28,779 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 16:44:10] 2025-10-10 16:43:28,779 | INFO     | summary of transferred files:
[2025-10-10 16:44:10] 2025-10-10 16:43:28,779 | INFO     |  -- lfn=log.46676269._034339.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 16:44:10] 2025-10-10 16:43:28,779 | INFO     | stage-out finished correctly
[2025-10-10 16:44:10] 2025-10-10 16:43:28,863 | INFO     | time since job start (3162s) is within the limit (172800.0s)
[2025-10-10 16:44:10] 2025-10-10 16:43:28,864 | INFO     | 3166s have passed since pilot start - server update state is 'RUNNING'
[2025-10-10 16:44:10] 2025-10-10 16:43:29,511 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 16:44:10] 2025-10-10 16:43:30,045 | INFO     | monitor loop #221: job 0:6837508468 is in state 'finished'
[2025-10-10 16:44:10] 2025-10-10 16:43:30,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 16:44:10] 2025-10-10 16:43:30,869 | INFO     | time since job start (3164s) is within the limit (172800.0s)
[2025-10-10 16:44:10] 2025-10-10 16:43:32,549 | INFO     | monitor loop #222: job 0:6837508468 is in state 'finished'
[2025-10-10 16:44:10] 2025-10-10 16:43:32,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 16:44:10] 2025-10-10 16:43:32,554 | INFO     | job 6837508468 has state=finished
[2025-10-10 16:44:10] 2025-10-10 16:43:32,555 | INFO     | preparing for final server update for job 6837508468 in state='finished'
[2025-10-10 16:44:10] 2025-10-10 16:43:32,555 | INFO     | this job has now completed (state=finished)
[2025-10-10 16:44:10] 2025-10-10 16:43:32,555 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 16:44:10] 2025-10-10 16:43:32,555 | INFO     | log transfer has been attempted: DONE
[2025-10-10 16:44:10] 2025-10-10 16:43:32,555 | INFO     | job 6837508468 has finished - writing final server update
[2025-10-10 16:44:10] 2025-10-10 16:43:32,555 | INFO     | total number of processed events: 400 (read)
[2025-10-10 16:44:10] 2025-10-10 16:43:32,556 | INFO     | executing command: lscpu
[2025-10-10 16:44:10] 2025-10-10 16:43:32,698 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 16:44:10] 2025-10-10 16:43:32,876 | INFO     | time since job start (3166s) is within the limit (172800.0s)
[2025-10-10 16:44:10] 2025-10-10 16:43:34,879 | INFO     | time since job start (3168s) is within the limit (172800.0s)
[2025-10-10 16:44:10] 2025-10-10 16:43:35,051 | INFO     | monitor loop #223: job 0:6837508468 is in state 'finished'
[2025-10-10 16:44:10] 2025-10-10 16:43:35,052 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 16:44:10] 2025-10-10 16:43:36,882 | INFO     | time since job start (3170s) is within the limit (172800.0s)
[2025-10-10 16:44:10] 2025-10-10 16:43:37,503 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 16:44:10] 2025-10-10 16:43:37,555 | INFO     | monitor loop #224: job 0:6837508468 is in state 'finished'
[2025-10-10 16:44:10] 2025-10-10 16:43:37,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 16:44:10] 2025-10-10 16:43:37,560 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2269.560429687501
[2025-10-10 16:44:10] 2025-10-10 16:43:37,631 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6837508468/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 16:44:10] 2025-10-10 16:43:37,632 | INFO     | extracted standard info from prmon json
[2025-10-10 16:44:10] 2025-10-10 16:43:37,632 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 16:44:10] 2025-10-10 16:43:37,632 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 16:44:10] 2025-10-10 16:43:37,633 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 16:44:10] 2025-10-10 16:43:37,633 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 16:44:10] 2025-10-10 16:43:37,634 | INFO     | fitting pss+swap vs Time
[2025-10-10 16:44:10] 2025-10-10 16:43:37,635 | INFO     | sum of square deviations: 28242390.0
[2025-10-10 16:44:10] 2025-10-10 16:43:37,635 | INFO     | sum of deviations: 165559063.0
[2025-10-10 16:44:10] 2025-10-10 16:43:37,635 | INFO     | mean x: 1760113120.0
[2025-10-10 16:44:10] 2025-10-10 16:43:37,635 | INFO     | mean y: 2650830.311111111
[2025-10-10 16:44:10] 2025-10-10 16:43:37,635 | INFO     | -- intersect: -10315267692.916086
[2025-10-10 16:44:10] 2025-10-10 16:43:37,635 | INFO     | intersect: -10315267692.916086
[2025-10-10 16:44:10] 2025-10-10 16:43:37,635 | INFO     | chi2: 0.0009666154600474865
[2025-10-10 16:44:10] 2025-10-10 16:43:37,636 | INFO     | -- intersect: -10315267692.916086
[2025-10-10 16:44:10] 2025-10-10 16:43:37,636 | INFO     | current memory leak: 5.86 B/s (using 45 data points, chi2=0.00)
[2025-10-10 16:44:10] 2025-10-10 16:43:37,636 | INFO     | could have reported an average CPU frequency of 2278 MHz (5 samples)
[2025-10-10 16:44:10] 2025-10-10 16:43:37,636 | INFO     | ..............................
[2025-10-10 16:44:10] 2025-10-10 16:43:37,636 | INFO     | . Timing measurements:
[2025-10-10 16:44:10] 2025-10-10 16:43:37,636 | INFO     | . get job = 0 s
[2025-10-10 16:44:10] 2025-10-10 16:43:37,636 | INFO     | . initial setup = 3 s
[2025-10-10 16:44:10] 2025-10-10 16:43:37,636 | INFO     | . payload setup = 6 s
[2025-10-10 16:44:10] 2025-10-10 16:43:37,637 | INFO     | . stage-in = 0 s
[2025-10-10 16:44:10] 2025-10-10 16:43:37,637 | INFO     | . payload execution = 3135 s
[2025-10-10 16:44:10] 2025-10-10 16:43:37,637 | INFO     | . stage-out = 0 s
[2025-10-10 16:44:10] 2025-10-10 16:43:37,637 | INFO     | . log creation = 0 s
[2025-10-10 16:44:10] 2025-10-10 16:43:37,637 | INFO     | ..............................
[2025-10-10 16:44:10] 2025-10-10 16:43:38,104 | INFO     | 
[2025-10-10 16:44:10] 2025-10-10 16:43:38,104 | INFO     | job summary report
[2025-10-10 16:44:10] 2025-10-10 16:43:38,104 | INFO     | --------------------------------------------------
[2025-10-10 16:44:10] 2025-10-10 16:43:38,104 | INFO     | PanDA job id: 6837508468
[2025-10-10 16:44:10] 2025-10-10 16:43:38,104 | INFO     | task id: 46676269
[2025-10-10 16:44:10] 2025-10-10 16:43:38,104 | INFO     | errors: (none)
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | pilot state: finished 
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | transexitcode: 0
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | exeerrorcode: 0
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | exeerrordiag: 
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | exitcode: 0
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | exitmsg: OK
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | cpuconsumptiontime: 33683 s
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | nevents: 400
[2025-10-10 16:44:10] 2025-10-10 16:43:38,105 | INFO     | neventsw: 0
[2025-10-10 16:44:10] 2025-10-10 16:43:38,106 | INFO     | pid: 2453487
[2025-10-10 16:44:10] 2025-10-10 16:43:38,106 | INFO     | pgrp: 2453487
[2025-10-10 16:44:10] 2025-10-10 16:43:38,106 | INFO     | corecount: 12
[2025-10-10 16:44:10] 2025-10-10 16:43:38,106 | INFO     | event service: False
[2025-10-10 16:44:10] 2025-10-10 16:43:38,106 | INFO     | sizes: {0: 2348858, 5: 2349120, 11: 2349176, 3145: 2374887, 3146: 2383887, 3147: 2383943, 3155: 2384297}
[2025-10-10 16:44:10] 2025-10-10 16:43:38,106 | INFO     | --------------------------------------------------
[2025-10-10 16:44:10] 2025-10-10 16:43:38,106 | INFO     | 
[2025-10-10 16:44:10] 2025-10-10 16:43:38,106 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-10-10 16:44:10] 2025-10-10 16:43:38,129 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,130 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 16:44:10] 2025-10-10 16:43:38,131 | INFO     | job 6837508468 has completed (purged errors)
[2025-10-10 16:44:10] 2025-10-10 16:43:38,132 | INFO     | overall cleanup function is called
[2025-10-10 16:44:10] 2025-10-10 16:43:39,138 | INFO     | --- collectZombieJob: --- 10, [2453487]
[2025-10-10 16:44:10] 2025-10-10 16:43:39,139 | INFO     | zombie collector waiting for pid 2453487
[2025-10-10 16:44:10] 2025-10-10 16:43:39,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 16:44:10] 2025-10-10 16:43:39,139 | INFO     | collected zombie processes
[2025-10-10 16:44:10] 2025-10-10 16:43:39,139 | INFO     | will attempt to kill all subprocesses of pid=2453487
[2025-10-10 16:44:10] 2025-10-10 16:43:39,947 | INFO     | process IDs to be killed: [2453487] (in reverse order)
[2025-10-10 16:44:10] 2025-10-10 16:43:40,145 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 16:44:10] 2025-10-10 16:43:40,145 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 16:44:10] 2025-10-10 16:43:40,172 | INFO     | did not find any defunct processes belonging to 2453487
[2025-10-10 16:44:10] 2025-10-10 16:43:40,201 | INFO     | did not find any defunct processes belonging to 2453487
[2025-10-10 16:44:10] 2025-10-10 16:43:40,201 | INFO     | ready for new job
[2025-10-10 16:44:10] 2025-10-10 16:43:40,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 16:44:10] 2025-10-10 16:43:40,203 | INFO     | ***************************************
[2025-10-10 16:44:10] 2025-10-10 16:43:40,204 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 16:44:10] 2025-10-10 16:43:40,204 | INFO     | ***************************************
[2025-10-10 16:44:10] 2025-10-10 16:43:40,204 | INFO     | 
[2025-10-10 16:44:10] 2025-10-10 16:43:40,238 | INFO     | architecture information:
[2025-10-10 16:44:10] 2025-10-10 16:43:40,238 | INFO     | executing command: cat /etc/os-release
[2025-10-10 16:44:10] 2025-10-10 16:43:40,256 | INFO     | cat /etc/os-release:
[2025-10-10 16:44:10] NAME="CentOS Linux"
[2025-10-10 16:44:10] VERSION="7 (Core)"
[2025-10-10 16:44:10] ID="centos"
[2025-10-10 16:44:10] ID_LIKE="rhel fedora"
[2025-10-10 16:44:10] VERSION_ID="7"
[2025-10-10 16:44:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 16:44:10] ANSI_COLOR="0;31"
[2025-10-10 16:44:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 16:44:10] HOME_URL="https://www.centos.org/"
[2025-10-10 16:44:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 16:44:10] 
[2025-10-10 16:44:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 16:44:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 16:44:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 16:44:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 16:44:10] 
[2025-10-10 16:44:10] 2025-10-10 16:43:40,256 | INFO     | ***************************************
[2025-10-10 16:44:10] 2025-10-10 16:43:40,759 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-10-10 16:44:10] 2025-10-10 16:43:40,777 | INFO     | sufficient remaining disk space (1727769083904 B)
[2025-10-10 16:44:10] 2025-10-10 16:43:40,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 16:44:10] 2025-10-10 16:43:40,777 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 16:44:10] 2025-10-10 16:43:40,777 | INFO     | update_server=False
[2025-10-10 16:44:10] 2025-10-10 16:43:40,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 16:44:10] 2025-10-10 16:43:40,778 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 16:44:10] 2025-10-10 16:43:41,061 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 16:44:10] 2025-10-10 16:43:41,061 | INFO     | aborting loop
[2025-10-10 16:44:10] 2025-10-10 16:43:41,319 | INFO     | all data control threads have been joined
[2025-10-10 16:44:10] 2025-10-10 16:43:41,694 | INFO     | all payload control threads have been joined
[2025-10-10 16:44:10] 2025-10-10 16:43:41,702 | INFO     | all job control threads have been joined
[2025-10-10 16:44:10] 2025-10-10 16:43:41,782 | INFO     | [job] retrieve thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:41,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 16:44:10] 2025-10-10 16:43:42,067 | INFO     | [job] job monitor thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:42,170 | INFO     | [job] validate thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:42,322 | INFO     | [data] control thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:42,350 | INFO     | [payload] failed_post thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:42,351 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:42,458 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:42,699 | INFO     | [payload] control thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:42,706 | INFO     | [job] control thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:42,743 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 16:44:10] 2025-10-10 16:43:43,005 | INFO     | [payload] validate_post thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:43,106 | INFO     | [data] copytool_in thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:43,270 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:43,748 | INFO     | [job] queue monitor thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:43,862 | INFO     | [data] copytool_out thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:44,782 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:50,562 | INFO     | [monitor] cgroup control has ended
[2025-10-10 16:44:10] 2025-10-10 16:43:51,533 | INFO     | job.realtimelogging is not enabled
[2025-10-10 16:44:10] 2025-10-10 16:43:52,538 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 16:44:10] 2025-10-10 16:43:52,616 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139869389145920)>', '<ExcThread(monitor, started 139868831217408)>']
[2025-10-10 16:44:10] 2025-10-10 16:43:57,638 | INFO     | all workflow threads have been joined
[2025-10-10 16:44:10] 2025-10-10 16:43:57,639 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 16:44:10] 2025-10-10 16:43:57,639 | INFO     | traces error code: 0
[2025-10-10 16:44:10] 2025-10-10 16:43:57,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 16:44:10] 2025-10-10 16:44:10,556 | INFO     | PID=2406467 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 16:44:10] 2025-10-10 16:44:10,556 | INFO     | .. there are 17 such processes running
[2025-10-10 16:44:10] 2025-10-10 16:44:10,556 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 16:44:10] 2025-10-10 16:44:10,557 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 16:44:10] 2025-10-10 16:44:10,557 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 16:44:10] 2025-10-10 16:44:10,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 16:44:10] 2025-10-10 16:44:10,557 | INFO     | [monitor] control thread has ended
[2025-10-10 16:44:10] 2025-10-10 16:44:10,697 [wrapper] ==== pilot stdout END ====
[2025-10-10 16:44:10] 2025-10-10 16:44:10,699 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 16:44:10] 2025-10-10 16:44:10,702 [wrapper] pilotpid: 2406467
[2025-10-10 16:44:10] 2025-10-10 16:44:10,704 [wrapper] Pilot exit status: 0
[2025-10-10 16:44:10] 2025-10-10 16:44:10,716 [wrapper] pandaids: 6837508468
[2025-10-10 16:44:10] 2025-10-10 16:44:10,847 [wrapper] cleanup supervisor_pilot 2666567 2406468
[2025-10-10 16:44:10] 2025-10-10 16:44:10,850 [wrapper] Test setup, not cleaning
[2025-10-10 16:44:10] 2025-10-10 16:44:10,853 [wrapper] apfmon messages muted
[2025-10-10 16:44:10] 2025-10-10 16:44:10,856 [wrapper] ==== wrapper stdout END ====
[2025-10-10 16:44:10] 2025-10-10 16:44:10,859 [wrapper] ==== wrapper stderr END ====
[2025-10-10 16:44:10]  *** Error codes and diagnostics ***
[2025-10-10 16:44:10]     "exeErrorCode": 0,
[2025-10-10 16:44:10]     "exeErrorDiag": "",
[2025-10-10 16:44:10]     "pilotErrorCode": 0,
[2025-10-10 16:44:10]     "pilotErrorDiag": "",
[2025-10-10 16:44:10]  *** Listing of results directory ***
[2025-10-10 16:44:10] total 407676
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc    557409 Oct 10 06:56 pilot3.tar.gz
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc      5112 Oct 10 07:07 queuedata.json
[2025-10-10 16:44:10] -rwx------ 1 boinc boinc     36292 Oct 10 07:07 runpilot2-wrapper.sh
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc       100 Oct 10 15:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 16:44:10] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 15:50 run_atlas
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc       105 Oct 10 15:50 job.xml
[2025-10-10 16:44:10] -rw-r--r-- 2 boinc boinc 223409073 Oct 10 15:50 EVNT.46676267._001397.pool.root.1
[2025-10-10 16:44:10] -rw-r--r-- 2 boinc boinc     15120 Oct 10 15:50 start_atlas.sh
[2025-10-10 16:44:10] drwxrwx--x 2 boinc boinc      4096 Oct 10 15:50 shared
[2025-10-10 16:44:10] -rw-r--r-- 2 boinc boinc    569679 Oct 10 15:50 input.tar.gz
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc      9396 Oct 10 15:50 init_data.xml
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc         0 Oct 10 15:50 boinc_setup_complete
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc         0 Oct 10 15:50 boinc_lockfile
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc      2550 Oct 10 15:50 pandaJob.out
[2025-10-10 16:44:10] -rw------- 1 boinc boinc    975533 Oct 10 15:50 agis_schedconf.cvmfs.json
[2025-10-10 16:44:10] -rw------- 1 boinc boinc   1560580 Oct 10 15:50 agis_ddmendpoints.agis.ALL.json
[2025-10-10 16:44:10] drwx------ 5 boinc boinc      4096 Oct 10 15:50 pilot3
[2025-10-10 16:44:10] -rw------- 1 boinc boinc 188475489 Oct 10 16:42 HITS.46676269._034339.pool.root.1
[2025-10-10 16:44:10] -rw------- 1 boinc boinc      1025 Oct 10 16:43 memory_monitor_summary.json
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc       529 Oct 10 16:43 boinc_task_state.xml
[2025-10-10 16:44:10] -rw------- 1 boinc boinc    361275 Oct 10 16:43 log.46676269._034339.job.log.tgz.1
[2025-10-10 16:44:10] -rw------- 1 boinc boinc        95 Oct 10 16:43 pilot_heartbeat.json
[2025-10-10 16:44:10] -rw------- 1 boinc boinc      7739 Oct 10 16:43 heartbeat.json
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc      8192 Oct 10 16:43 boinc_mmap_file
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc        27 Oct 10 16:43 wrapper_checkpoint.txt
[2025-10-10 16:44:10] -rw------- 1 boinc boinc       823 Oct 10 16:44 pilotlog.txt
[2025-10-10 16:44:10] -rw------- 1 boinc boinc    471301 Oct 10 16:44 log.46676269._034339.job.log.1
[2025-10-10 16:44:10] -rw------- 1 boinc boinc       357 Oct 10 16:44 output.list
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc       620 Oct 10 16:44 runtime_log
[2025-10-10 16:44:10] -rw------- 1 boinc boinc    849920 Oct 10 16:44 result.tar.gz
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc      8672 Oct 10 16:44 runtime_log.err
[2025-10-10 16:44:10] -rw------- 1 boinc boinc       643 Oct 10 16:44 nIiLDmEPMR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmShcNDmnWfeMo.diag
[2025-10-10 16:44:10] -rw-r--r-- 1 boinc boinc     21971 Oct 10 16:44 stderr.txt
[2025-10-10 16:44:10] HITS file was successfully produced:
[2025-10-10 16:44:10] -rw------- 1 boinc boinc 188475489 Oct 10 16:42 shared/HITS.pool.root.1
[2025-10-10 16:44:10]  *** Contents of shared directory: ***
[2025-10-10 16:44:10] total 403652
[2025-10-10 16:44:10] -rw-r--r-- 2 boinc boinc 223409073 Oct 10 15:50 ATLAS.root_0
[2025-10-10 16:44:10] -rw-r--r-- 2 boinc boinc     15120 Oct 10 15:50 start_atlas.sh
[2025-10-10 16:44:10] -rw-r--r-- 2 boinc boinc    569679 Oct 10 15:50 input.tar.gz
[2025-10-10 16:44:10] -rw------- 1 boinc boinc 188475489 Oct 10 16:42 HITS.pool.root.1
[2025-10-10 16:44:10] -rw------- 1 boinc boinc    849920 Oct 10 16:44 result.tar.gz
16:44:12 (2382436): run_atlas exited; CPU time 33885.656154
16:44:12 (2382436): called boinc_finish(0)

</stderr_txt>
]]>

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