Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:21:23 (2566369): wrapper (7.7.26015): starting
03:21:23 (2566369): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 03:21:23] Arguments: --nthreads 4
[2025-10-11 03:21:23] Threads: 4
[2025-10-11 03:21:23] Checking for CVMFS
[2025-10-11 03:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 03:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 03:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 03:21:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 03:21:24] 2.9.2.0 1695166 2224 91960 151567 1 57 27687297 36864001 0 130560 0 2277291 99.993 72178 838 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 03:21:24] CVMFS is ok
[2025-10-11 03:21:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 03:21:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 03:21:24] Further information can be found at the LHC@home message board.
[2025-10-11 03:21:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 03:21:24] Checking for apptainer binary...
[2025-10-11 03:21:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 03:21:24] Running /usr/bin/apptainer --version
[2025-10-11 03:21:24] apptainer version 1.4.1-1.1
[2025-10-11 03:21:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 03:21:24] magicA244a
[2025-10-11 03:21:24] apptainer works
[2025-10-11 03:21:24] Set ATHENA_PROC_NUMBER=4
[2025-10-11 03:21:24] Set ATHENA_CORE_NUMBER=4
[2025-10-11 03:21:24] Starting ATLAS job with PandaID=6837399554
[2025-10-11 03:21:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 04:24:40]  *** The last 200 lines of the pilot log: ***
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | job 6837399554 has completed (purged errors)
[2025-10-11 04:24:40] 2025-10-11 02:23:56,690 | INFO     | overall cleanup function is called
[2025-10-11 04:24:40] 2025-10-11 02:23:57,697 | INFO     | --- collectZombieJob: --- 10, [2576727]
[2025-10-11 04:24:40] 2025-10-11 02:23:57,697 | INFO     | zombie collector waiting for pid 2576727
[2025-10-11 04:24:40] 2025-10-11 02:23:57,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 04:24:40] 2025-10-11 02:23:57,697 | INFO     | collected zombie processes
[2025-10-11 04:24:40] 2025-10-11 02:23:57,697 | INFO     | will attempt to kill all subprocesses of pid=2576727
[2025-10-11 04:24:40] 2025-10-11 02:23:57,742 | INFO     | process IDs to be killed: [2576727] (in reverse order)
[2025-10-11 04:24:40] 2025-10-11 02:23:57,768 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 04:24:40] 2025-10-11 02:23:57,768 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 04:24:40] 2025-10-11 02:23:57,769 | INFO     | did not find any defunct processes belonging to 2576727
[2025-10-11 04:24:40] 2025-10-11 02:23:57,770 | INFO     | did not find any defunct processes belonging to 2576727
[2025-10-11 04:24:40] 2025-10-11 02:23:57,771 | INFO     | ready for new job
[2025-10-11 04:24:40] 2025-10-11 02:23:57,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 04:24:40] 2025-10-11 02:23:57,771 | INFO     | ***************************************
[2025-10-11 04:24:40] 2025-10-11 02:23:57,771 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 04:24:40] 2025-10-11 02:23:57,771 | INFO     | ***************************************
[2025-10-11 04:24:40] 2025-10-11 02:23:57,771 | INFO     | 
[2025-10-11 04:24:40] 2025-10-11 02:23:57,772 | INFO     | architecture information:
[2025-10-11 04:24:40] 2025-10-11 02:23:57,772 | INFO     | executing command: cat /etc/os-release
[2025-10-11 04:24:40] 2025-10-11 02:23:57,781 | INFO     | cat /etc/os-release:
[2025-10-11 04:24:40] NAME="CentOS Linux"
[2025-10-11 04:24:40] VERSION="7 (Core)"
[2025-10-11 04:24:40] ID="centos"
[2025-10-11 04:24:40] ID_LIKE="rhel fedora"
[2025-10-11 04:24:40] VERSION_ID="7"
[2025-10-11 04:24:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 04:24:40] ANSI_COLOR="0;31"
[2025-10-11 04:24:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 04:24:40] HOME_URL="https://www.centos.org/"
[2025-10-11 04:24:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 04:24:40] 
[2025-10-11 04:24:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 04:24:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 04:24:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 04:24:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 04:24:40] 
[2025-10-11 04:24:40] 2025-10-11 02:23:57,781 | INFO     | ***************************************
[2025-10-11 04:24:40] 2025-10-11 02:23:58,285 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 04:24:40] 2025-10-11 02:23:58,298 | INFO     | sufficient remaining disk space (331737989120 B)
[2025-10-11 04:24:40] 2025-10-11 02:23:58,298 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 04:24:40] 2025-10-11 02:23:58,298 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 04:24:40] 2025-10-11 02:23:58,299 | INFO     | update_server=False
[2025-10-11 04:24:40] 2025-10-11 02:23:58,299 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 04:24:40] 2025-10-11 02:23:58,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 04:24:40] 2025-10-11 02:23:58,299 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 04:24:40] 2025-10-11 02:23:58,299 | INFO     | aborting loop
[2025-10-11 04:24:40] 2025-10-11 02:23:58,472 | INFO     | all payload control threads have been joined
[2025-10-11 04:24:40] 2025-10-11 02:23:58,661 | INFO     | all data control threads have been joined
[2025-10-11 04:24:40] 2025-10-11 02:23:58,892 | INFO     | all job control threads have been joined
[2025-10-11 04:24:40] 2025-10-11 02:23:58,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 04:24:40] 2025-10-11 02:23:59,304 | INFO     | [job] retrieve thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:23:59,305 | INFO     | [job] queue monitor thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:23:59,305 | INFO     | [job] job monitor thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:23:59,478 | INFO     | [payload] control thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:23:59,628 | INFO     | [payload] validate_post thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:23:59,667 | INFO     | [data] control thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:23:59,898 | INFO     | [job] control thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:00,412 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:00,660 | INFO     | [job] validate thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:00,660 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:00,668 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:00,680 | INFO     | [data] copytool_in thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:00,705 | INFO     | [payload] failed_post thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:00,924 | INFO     | [data] copytool_out thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:01,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 04:24:40] 2025-10-11 02:24:05,451 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:09,011 | INFO     | job.realtimelogging is not enabled
[2025-10-11 04:24:40] 2025-10-11 02:24:10,017 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 04:24:40] 2025-10-11 02:24:28,270 | INFO     | PID=2570156 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 04:24:40] 2025-10-11 02:24:28,270 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 04:24:40] 2025-10-11 02:24:28,270 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 04:24:40] 2025-10-11 02:24:28,270 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 04:24:40] 2025-10-11 02:24:34,501 | INFO     | [monitor] cgroup control has ended
[2025-10-11 04:24:40] 2025-10-11 02:24:35,121 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140251240322880)>', '<ExcThread(monitor, started 140250428970752)>']
[2025-10-11 04:24:40] 2025-10-11 02:24:35,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 04:24:40] 2025-10-11 02:24:35,308 | INFO     | [monitor] control thread has ended
[2025-10-11 04:24:40] 2025-10-11 02:24:40,147 | INFO     | all workflow threads have been joined
[2025-10-11 04:24:40] 2025-10-11 02:24:40,147 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 04:24:40] 2025-10-11 02:24:40,148 | INFO     | traces error code: 0
[2025-10-11 04:24:40] 2025-10-11 02:24:40,148 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 04:24:40] 2025-10-11 02:24:40,204 [wrapper] ==== pilot stdout END ====
[2025-10-11 04:24:40] 2025-10-11 02:24:40,207 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 04:24:40] 2025-10-11 02:24:40,209 [wrapper] pilotpid: 2570156
[2025-10-11 04:24:40] 2025-10-11 02:24:40,212 [wrapper] Pilot exit status: 0
[2025-10-11 04:24:40] 2025-10-11 02:24:40,220 [wrapper] pandaids: 6837399554
[2025-10-11 04:24:40] 2025-10-11 02:24:40,237 [wrapper] cleanup supervisor_pilot 2586595 2570157
[2025-10-11 04:24:40] 2025-10-11 02:24:40,240 [wrapper] Test setup, not cleaning
[2025-10-11 04:24:40] 2025-10-11 02:24:40,243 [wrapper] apfmon messages muted
[2025-10-11 04:24:40] 2025-10-11 02:24:40,245 [wrapper] ==== wrapper stdout END ====
[2025-10-11 04:24:40] 2025-10-11 02:24:40,248 [wrapper] ==== wrapper stderr END ====
[2025-10-11 04:24:40]  *** Error codes and diagnostics ***
[2025-10-11 04:24:40]     "exeErrorCode": 0,
[2025-10-11 04:24:40]     "exeErrorDiag": "",
[2025-10-11 04:24:40]     "pilotErrorCode": 0,
[2025-10-11 04:24:40]     "pilotErrorDiag": "",
[2025-10-11 04:24:40]  *** Listing of results directory ***
[2025-10-11 04:24:40] total 412140
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc      5112 Oct 10 05:38 queuedata.json
[2025-10-11 04:24:40] -rwx------ 1 boinc boinc     36292 Oct 10 05:38 runpilot2-wrapper.sh
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc    557409 Oct 10 05:38 pilot3.tar.gz
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc       100 Oct 11 03:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 04:24:40] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 03:21 run_atlas
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc       105 Oct 11 03:21 job.xml
[2025-10-11 04:24:40] -rw-r--r-- 2 boinc boinc 220838098 Oct 11 03:21 EVNT.46676267._001285.pool.root.1
[2025-10-11 04:24:40] -rw-r--r-- 2 boinc boinc    569678 Oct 11 03:21 input.tar.gz
[2025-10-11 04:24:40] -rw-r--r-- 2 boinc boinc     15120 Oct 11 03:21 start_atlas.sh
[2025-10-11 04:24:40] drwxrwx--x 2 boinc boinc      4096 Oct 11 03:21 shared
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc         0 Oct 11 03:21 boinc_setup_complete
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc      6438 Oct 11 03:21 init_data.xml
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc         0 Oct 11 03:21 boinc_lockfile
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc      2550 Oct 11 03:21 pandaJob.out
[2025-10-11 04:24:40] -rw------- 1 boinc boinc    975517 Oct 11 03:21 agis_schedconf.cvmfs.json
[2025-10-11 04:24:40] -rw------- 1 boinc boinc   1560580 Oct 11 03:21 agis_ddmendpoints.agis.ALL.json
[2025-10-11 04:24:40] drwx------ 5 boinc boinc      4096 Oct 11 03:21 pilot3
[2025-10-11 04:24:40] -rw------- 1 boinc boinc 195697897 Oct 11 04:23 HITS.46676269._031520.pool.root.1
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc       530 Oct 11 04:23 boinc_task_state.xml
[2025-10-11 04:24:40] -rw------- 1 boinc boinc      1014 Oct 11 04:23 memory_monitor_summary.json
[2025-10-11 04:24:40] -rw------- 1 boinc boinc        95 Oct 11 04:23 pilot_heartbeat.json
[2025-10-11 04:24:40] -rw------- 1 boinc boinc    239269 Oct 11 04:23 log.46676269._031520.job.log.tgz.1
[2025-10-11 04:24:40] -rw------- 1 boinc boinc      7754 Oct 11 04:23 heartbeat.json
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc      8192 Oct 11 04:24 boinc_mmap_file
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc        27 Oct 11 04:24 wrapper_checkpoint.txt
[2025-10-11 04:24:40] -rw------- 1 boinc boinc      4824 Oct 11 04:24 pilotlog.txt
[2025-10-11 04:24:40] -rw------- 1 boinc boinc    564422 Oct 11 04:24 log.46676269._031520.job.log.1
[2025-10-11 04:24:40] -rw------- 1 boinc boinc       357 Oct 11 04:24 output.list
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc       620 Oct 11 04:24 runtime_log
[2025-10-11 04:24:40] -rw------- 1 boinc boinc    819200 Oct 11 04:24 result.tar.gz
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc      8797 Oct 11 04:24 runtime_log.err
[2025-10-11 04:24:40] -rw------- 1 boinc boinc       662 Oct 11 04:24 lJYKDmv8IR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmHGPMDmgz0z7n.diag
[2025-10-11 04:24:40] -rw-r--r-- 1 boinc boinc     11716 Oct 11 04:24 stderr.txt
[2025-10-11 04:24:40] HITS file was successfully produced:
[2025-10-11 04:24:40] -rw------- 1 boinc boinc 195697897 Oct 11 04:23 shared/HITS.pool.root.1
[2025-10-11 04:24:40]  *** Contents of shared directory: ***
[2025-10-11 04:24:40] total 408160
[2025-10-11 04:24:40] -rw-r--r-- 2 boinc boinc 220838098 Oct 11 03:21 ATLAS.root_0
[2025-10-11 04:24:40] -rw-r--r-- 2 boinc boinc    569678 Oct 11 03:21 input.tar.gz
[2025-10-11 04:24:40] -rw-r--r-- 2 boinc boinc     15120 Oct 11 03:21 start_atlas.sh
[2025-10-11 04:24:40] -rw------- 1 boinc boinc 195697897 Oct 11 04:23 HITS.pool.root.1
[2025-10-11 04:24:40] -rw------- 1 boinc boinc    819200 Oct 11 04:24 result.tar.gz
04:24:42 (2566369): run_atlas exited; CPU time 13972.979906
04:24:42 (2566369): called boinc_finish(0)

</stderr_txt>
]]>

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