Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:35:49 (315637): wrapper (7.7.26015): starting
17:35:49 (315637): wrapper: running run_atlas (--nthreads 2)
[2025-10-10 17:35:49] Arguments: --nthreads 2
[2025-10-10 17:35:49] Threads: 2
[2025-10-10 17:35:49] Checking for CVMFS
[2025-10-10 17:35:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 17:35:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 17:35:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 17:35:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 17:35:50] 2.11.0.0 3088652 355 47316 151553 1 16 4166447 4194305 0 130560 0 4464017 99.999 17440 851 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 17:35:50] CVMFS is ok
[2025-10-10 17:35:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 17:35:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 17:35:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 17:35:50] Further information can be found at the LHC@home message board.
[2025-10-10 17:35:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 17:35:50] Checking for apptainer binary...
[2025-10-10 17:35:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 17:35:50] Running /usr/bin/apptainer --version
[2025-10-10 17:35:50] apptainer version 1.2.2-1.el8
[2025-10-10 17:35:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 17:35:51] bottom
[2025-10-10 17:35:51] apptainer works
[2025-10-10 17:35:51] Set ATHENA_PROC_NUMBER=2
[2025-10-10 17:35:51] Set ATHENA_CORE_NUMBER=2
[2025-10-10 17:35:51] Starting ATLAS job with PandaID=6837557567
[2025-10-10 17:35:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 17:43:13]  *** The last 200 lines of the pilot log: ***
[2025-10-10 17:43:13] 2025-10-10 15:42:35,505 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-10 17:43:13] 2025-10-10 15:42:35,506 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6837557567/memory_monitor_output.txt
[2025-10-10 17:43:13] 2025-10-10 15:42:35,507 | INFO     | memory summary dictionary not yet available
[2025-10-10 17:43:13] 2025-10-10 15:42:35,507 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:43:13] 2025-10-10 15:42:35,507 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | could have reported an average CPU frequency of 1880 MHz (4 samples)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | ..............................
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | . Timing measurements:
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | . get job = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . initial setup = 2 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . payload setup = 11 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . stage-in = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . payload execution = 171 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . stage-out = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . log creation = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | ..............................
[2025-10-10 17:43:13] 2025-10-10 15:42:35,510 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 17:43:13] 2025-10-10 15:42:35,510 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6837557567/pilotlog.txt
[2025-10-10 17:43:13] 2025-10-10 15:42:35,529 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 17:43:13] - Log from pilotlog.txt -
[2025-10-10 17:43:13] 2025-10-10 15:42:34,151 | INFO     | time since job start (388s) is within the limit (172800.0s)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,504 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-10 17:43:13] 2025-10-10 15:42:35,505 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-10 17:43:13] 2025-10-10 15:42:35,506 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6837557567/memory_monitor_output.txt
[2025-10-10 17:43:13] 2025-10-10 15:42:35,507 | INFO     | memory summary dictionary not yet available
[2025-10-10 17:43:13] 2025-10-10 15:42:35,507 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:43:13] 2025-10-10 15:42:35,507 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | could have reported an average CPU frequency of 1880 MHz (4 samples)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | ..............................
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | . Timing measurements:
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | . get job = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . initial setup = 2 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . payload setup = 11 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . stage-in = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . payload execution = 171 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . stage-out = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . log creation = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | ..............................
[2025-10-10 17:43:13] 2025-10-10 15:42:35,510 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 17:43:13] 2025-10-10 15:42:35,510 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6837557567/pilotlog.txt
[2025-10-10 17:43:13] 2025-10-10 15:42:35,530 | WARNING  | 
[2025-10-10 17:43:13] [begin log extracts]
[2025-10-10 17:43:13] - Log from pilotlog.txt -
[2025-10-10 17:43:13] 2025-10-10 15:42:34,151 | INFO     | time since job start (388s) is within the limit (172800.0s)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,504 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-10 17:43:13] 2025-10-10 15:42:35,505 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-10 17:43:13] 2025-10-10 15:42:35,506 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6837557567/memory_monitor_output.txt
[2025-10-10 17:43:13] 2025-10-10 15:42:35,507 | INFO     | memory summary dictionary not yet available
[2025-10-10 17:43:13] 2025-10-10 15:42:35,507 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:43:13] 2025-10-10 15:42:35,507 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | could have reported an average CPU frequency of 1880 MHz (4 samples)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | ..............................
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | . Timing measurements:
[2025-10-10 17:43:13] 2025-10-10 15:42:35,508 | INFO     | . get job = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . initial setup = 2 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . payload setup = 11 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . stage-in = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . payload execution = 171 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . stage-out = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | . log creation = 0 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,509 | INFO     | ..............................
[2025-10-10 17:43:13] 2025-10-10 15:42:35,510 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 17:43:13] 2025-10-10 15:42:35,510 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6837557567/pilotlog.txt
[2025-10-10 17:43:13] [end log extracts]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,530 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,531 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-10 17:43:13] 2025-10-10 15:42:35,725 | INFO     | 
[2025-10-10 17:43:13] 2025-10-10 15:42:35,726 | INFO     | job summary report
[2025-10-10 17:43:13] 2025-10-10 15:42:35,726 | INFO     | --------------------------------------------------
[2025-10-10 17:43:13] 2025-10-10 15:42:35,726 | INFO     | PanDA job id: 6837557567
[2025-10-10 17:43:13] 2025-10-10 15:42:35,726 | INFO     | task id: 46676269
[2025-10-10 17:43:13] 2025-10-10 15:42:35,726 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 17:39:23,221 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 17:43:13] 2025-10-10 15:42:35,726 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 17:43:13] 2025-10-10 15:42:35,727 | INFO     | pilot state: failed 
[2025-10-10 17:43:13] 2025-10-10 15:42:35,727 | INFO     | transexitcode: 65
[2025-10-10 17:43:13] 2025-10-10 15:42:35,727 | INFO     | exeerrorcode: 65
[2025-10-10 17:43:13] 2025-10-10 15:42:35,727 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,727 | INFO     | exitcode: 65
[2025-10-10 17:43:13] 2025-10-10 15:42:35,727 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,727 | INFO     | cpuconsumptiontime: 154 s
[2025-10-10 17:43:13] 2025-10-10 15:42:35,728 | INFO     | nevents: 0
[2025-10-10 17:43:13] 2025-10-10 15:42:35,728 | INFO     | neventsw: 0
[2025-10-10 17:43:13] 2025-10-10 15:42:35,728 | INFO     | pid: 325766
[2025-10-10 17:43:13] 2025-10-10 15:42:35,728 | INFO     | pgrp: 325766
[2025-10-10 17:43:13] 2025-10-10 15:42:35,728 | INFO     | corecount: 2
[2025-10-10 17:43:13] 2025-10-10 15:42:35,728 | INFO     | event service: False
[2025-10-10 17:43:13] 2025-10-10 15:42:35,728 | INFO     | sizes: {0: 2348857, 1: 2348857, 7: 2349147, 12: 2349175, 247: 2372539, 248: 2376834, 249: 2376990, 371: 2377156}
[2025-10-10 17:43:13] 2025-10-10 15:42:35,728 | INFO     | --------------------------------------------------
[2025-10-10 17:43:13] 2025-10-10 15:42:35,729 | INFO     | 
[2025-10-10 17:43:13] 2025-10-10 15:42:35,729 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-10 17:43:13] 2025-10-10 15:42:35,755 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,755 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,756 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,756 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,756 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,758 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,758 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,758 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,758 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 17:43:13] 2025-10-10 15:42:35,758 | INFO     | job 6837557567 has completed (purged errors)
[2025-10-10 17:43:13] 2025-10-10 15:42:35,758 | INFO     | overall cleanup function is called
[2025-10-10 17:43:13] 2025-10-10 15:42:36,766 | INFO     | --- collectZombieJob: --- 10, [325766]
[2025-10-10 17:43:13] 2025-10-10 15:42:36,766 | INFO     | zombie collector waiting for pid 325766
[2025-10-10 17:43:13] 2025-10-10 15:42:36,766 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 17:43:13] 2025-10-10 15:42:36,766 | INFO     | collected zombie processes
[2025-10-10 17:43:13] 2025-10-10 15:42:36,766 | INFO     | will attempt to kill all subprocesses of pid=325766
[2025-10-10 17:43:13] 2025-10-10 15:42:36,840 | INFO     | process IDs to be killed: [325766] (in reverse order)
[2025-10-10 17:43:13] 2025-10-10 15:42:36,887 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 17:43:13] 2025-10-10 15:42:36,888 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 17:43:13] 2025-10-10 15:42:36,891 | INFO     | did not find any defunct processes belonging to 325766
[2025-10-10 17:43:13] 2025-10-10 15:42:36,895 | INFO     | did not find any defunct processes belonging to 325766
[2025-10-10 17:43:13] 2025-10-10 15:42:36,895 | INFO     | ready for new job
[2025-10-10 17:43:13] 2025-10-10 15:42:36,895 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 17:43:13] 2025-10-10 15:42:36,897 | INFO     | ***************************************
[2025-10-10 17:43:13] 2025-10-10 15:42:36,897 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 17:43:13] 2025-10-10 15:42:36,897 | INFO     | ***************************************
[2025-10-10 17:43:13] 2025-10-10 15:42:36,898 | INFO     | 
[2025-10-10 17:43:13] 2025-10-10 15:42:36,910 | INFO     | architecture information:
[2025-10-10 17:43:13] 2025-10-10 15:42:36,910 | INFO     | executing command: cat /etc/os-release
[2025-10-10 17:43:13] 2025-10-10 15:42:36,930 | INFO     | cat /etc/os-release:
[2025-10-10 17:43:13] NAME="CentOS Linux"
[2025-10-10 17:43:13] VERSION="7 (Core)"
[2025-10-10 17:43:13] ID="centos"
[2025-10-10 17:43:13] ID_LIKE="rhel fedora"
[2025-10-10 17:43:13] VERSION_ID="7"
[2025-10-10 17:43:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 17:43:13] ANSI_COLOR="0;31"
[2025-10-10 17:43:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 17:43:13] HOME_URL="https://www.centos.org/"
[2025-10-10 17:43:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 17:43:13] 
[2025-10-10 17:43:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 17:43:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 17:43:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 17:43:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 17:43:13] 
[2025-10-10 17:43:13] 2025-10-10 15:42:36,930 | INFO     | ***************************************
[2025-10-10 17:43:13] 2025-10-10 15:42:37,433 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-10 17:43:13] 2025-10-10 15:42:37,455 | INFO     | sufficient remaining disk space (212566278144 B)
[2025-10-10 17:43:13] 2025-10-10 15:42:37,455 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 17:43:13] 2025-10-10 15:42:37,456 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 17:43:13] 2025-10-10 15:42:37,456 | INFO     | update_server=False
[2025-10-10 17:43:13] 2025-10-10 15:42:37,456 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 17:43:13] 2025-10-10 15:42:37,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:43:13] 2025-10-10 15:42:37,457 | INFO     | aborting loop
[2025-10-10 17:43:13] 2025-10-10 15:42:37,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:43:13] 2025-10-10 15:42:37,457 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 17:43:13] 2025-10-10 15:42:37,695 | INFO     | all data control threads have been joined
[2025-10-10 17:43:13] 2025-10-10 15:42:37,753 | INFO     | all job control threads have been joined
[2025-10-10 17:43:13] 2025-10-10 15:42:38,207 | INFO     | all payload control threads have been joined
[2025-10-10 17:43:13] 2025-10-10 15:42:38,461 | INFO     | [job] queue monitor thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:38,462 | INFO     | [job] retrieve thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:38,462 | INFO     | [job] job monitor thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:38,630 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:38,701 | INFO     | [data] control thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:38,758 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:38,759 | INFO     | [job] control thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:38,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 17:43:13] 2025-10-10 15:42:38,912 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:39,174 | INFO     | [payload] failed_post thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:39,213 | INFO     | [payload] control thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:39,315 | INFO     | [data] copytool_in thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:39,578 | INFO     | [payload] validate_post thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:39,832 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:39,832 | INFO     | [job] validate thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:40,842 | INFO     | [data] copytool_out thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:42:41,462 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 17:43:13] 2025-10-10 15:43:06,168 | INFO     | [monitor] cgroup control has ended
[2025-10-10 17:43:13] 2025-10-10 15:43:07,313 | INFO     | PID=319261 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 17:43:13] 2025-10-10 15:43:07,315 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 17:43:13] 2025-10-10 15:43:07,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 17:43:13] 2025-10-10 15:43:07,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 17:43:13] 2025-10-10 15:43:07,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985299683136)>', '<ExcThread(monitor, started 139984703047424)>']
[2025-10-10 17:43:13] 2025-10-10 15:43:08,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 17:43:13] 2025-10-10 15:43:08,321 | INFO     | [monitor] control thread has ended
[2025-10-10 17:43:13] 2025-10-10 15:43:12,807 | INFO     | all workflow threads have been joined
[2025-10-10 17:43:13] 2025-10-10 15:43:12,808 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 17:43:13] 2025-10-10 15:43:12,808 | INFO     | traces error code: 0
[2025-10-10 17:43:13] 2025-10-10 15:43:12,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 17:43:13] 2025-10-10 15:43:12,972 [wrapper] ==== pilot stdout END ====
[2025-10-10 17:43:13] 2025-10-10 15:43:12,976 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 17:43:13] 2025-10-10 15:43:12,980 [wrapper] pilotpid: 319261
[2025-10-10 17:43:13] 2025-10-10 15:43:12,984 [wrapper] Pilot exit status: 0
[2025-10-10 17:43:13] 2025-10-10 15:43:13,000 [wrapper] pandaids: 6837557567
[2025-10-10 17:43:13] 2025-10-10 15:43:13,026 [wrapper] cleanup supervisor_pilot  319267 319262
[2025-10-10 17:43:13] 2025-10-10 15:43:13,030 [wrapper] Test setup, not cleaning
[2025-10-10 17:43:13] 2025-10-10 15:43:13,034 [wrapper] apfmon messages muted
[2025-10-10 17:43:13] 2025-10-10 15:43:13,038 [wrapper] ==== wrapper stdout END ====
[2025-10-10 17:43:13] 2025-10-10 15:43:13,042 [wrapper] ==== wrapper stderr END ====
[2025-10-10 17:43:13]  *** Error codes and diagnostics ***
[2025-10-10 17:43:13]     "exeErrorCode": 65,
[2025-10-10 17:43:13]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-10 17:43:13]     "pilotErrorCode": 1305,
[2025-10-10 17:43:13]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-10 17:43:13]  *** Listing of results directory ***
[2025-10-10 17:43:13] total 219380
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc    557409 Oct 10 11:06 pilot3.tar.gz
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc      5112 Oct 10 11:45 queuedata.json
[2025-10-10 17:43:13] -rwx------ 1 boinc boinc     36292 Oct 10 11:45 runpilot2-wrapper.sh
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc       100 Oct 10 17:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 17:43:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 17:35 run_atlas
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc       105 Oct 10 17:35 job.xml
[2025-10-10 17:43:13] -rw-r--r-- 2 boinc boinc 220367380 Oct 10 17:35 EVNT.46676267._001480.pool.root.1
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc      5984 Oct 10 17:35 init_data.xml
[2025-10-10 17:43:13] drwxrwx--x 2 boinc boinc        68 Oct 10 17:35 shared
[2025-10-10 17:43:13] -rw-r--r-- 2 boinc boinc    569682 Oct 10 17:35 input.tar.gz
[2025-10-10 17:43:13] -rw-r--r-- 2 boinc boinc     15120 Oct 10 17:35 start_atlas.sh
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc         0 Oct 10 17:35 boinc_lockfile
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc      2550 Oct 10 17:35 pandaJob.out
[2025-10-10 17:43:13] -rw------- 1 boinc boinc    975533 Oct 10 17:36 agis_schedconf.cvmfs.json
[2025-10-10 17:43:13] -rw------- 1 boinc boinc   1560580 Oct 10 17:36 agis_ddmendpoints.agis.ALL.json
[2025-10-10 17:43:13] drwx------ 5 boinc boinc      4096 Oct 10 17:36 pilot3
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc       524 Oct 10 17:38 boinc_task_state.xml
[2025-10-10 17:43:13] -rw------- 1 boinc boinc     47355 Oct 10 17:40 log.46676269._036415.job.log.tgz.1
[2025-10-10 17:43:13] -rw------- 1 boinc boinc      8064 Oct 10 17:42 heartbeat.json
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc      8192 Oct 10 17:42 boinc_mmap_file
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc        23 Oct 10 17:42 wrapper_checkpoint.txt
[2025-10-10 17:43:13] -rw------- 1 boinc boinc        95 Oct 10 17:43 pilot_heartbeat.json
[2025-10-10 17:43:13] -rw------- 1 boinc boinc      4748 Oct 10 17:43 pilotlog.txt
[2025-10-10 17:43:13] -rw------- 1 boinc boinc    148211 Oct 10 17:43 log.46676269._036415.job.log.1
[2025-10-10 17:43:13] -rw------- 1 boinc boinc       188 Oct 10 17:43 output.list
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc       620 Oct 10 17:43 runtime_log
[2025-10-10 17:43:13] -rw------- 1 boinc boinc    215040 Oct 10 17:43 result.tar.gz
[2025-10-10 17:43:13] -rw------- 1 boinc boinc       640 Oct 10 17:43 WGNNDmIsOR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmFlPMDmzxB2Mm.diag
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc      8505 Oct 10 17:43 runtime_log.err
[2025-10-10 17:43:13] -rw-r--r-- 1 boinc boinc     21891 Oct 10 17:43 stderr.txt
[2025-10-10 17:43:13] No HITS result produced
[2025-10-10 17:43:13]  *** Contents of shared directory: ***
[2025-10-10 17:43:13] total 215992
[2025-10-10 17:43:13] -rw-r--r-- 2 boinc boinc 220367380 Oct 10 17:35 ATLAS.root_0
[2025-10-10 17:43:13] -rw-r--r-- 2 boinc boinc    569682 Oct 10 17:35 input.tar.gz
[2025-10-10 17:43:13] -rw-r--r-- 2 boinc boinc     15120 Oct 10 17:35 start_atlas.sh
[2025-10-10 17:43:13] -rw------- 1 boinc boinc    215040 Oct 10 17:43 result.tar.gz
17:43:14 (315637): run_atlas exited; CPU time 136.432261
17:43:14 (315637): called boinc_finish(0)

</stderr_txt>
]]>

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