Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:13:19 (768127): wrapper (7.7.26015): starting
11:13:19 (768127): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 11:13:19] Arguments: --nthreads 8
[2025-10-10 11:13:19] Threads: 8
[2025-10-10 11:13:19] Checking for CVMFS
[2025-10-10 11:13:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 11:13:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 11:13:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 11:13:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 11:13:21] 2.13.2.0 317867 135282 615320 151550 2 794 31337943 40960001 52885 16776704 0 401746224 99.812 183078502 30743 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 11:13:21] CVMFS is ok
[2025-10-10 11:13:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 11:13:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 11:13:21] Further information can be found at the LHC@home message board.
[2025-10-10 11:13:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 11:13:21] Checking for apptainer binary...
[2025-10-10 11:13:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 11:13:21] Running /usr/bin/apptainer --version
[2025-10-10 11:13:21] apptainer version 1.4.3-1.el9
[2025-10-10 11:13:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 11:13:21] c8-6-11.aglt2.org
[2025-10-10 11:13:21] apptainer works
[2025-10-10 11:13:21] Set ATHENA_PROC_NUMBER=8
[2025-10-10 11:13:21] Set ATHENA_CORE_NUMBER=8
[2025-10-10 11:13:21] Starting ATLAS job with PandaID=6836604504
[2025-10-10 11:13:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 12:52:52]  *** The last 200 lines of the pilot log: ***
[2025-10-10 12:52:52] 2025-10-10 16:51:44,094 | INFO     | time since job start (5830s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:51:45,028 | INFO     | monitor loop #373: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:51:45,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:51:46,101 | INFO     | time since job start (5832s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:51:47,538 | INFO     | monitor loop #374: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:51:47,538 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:51:48,112 | INFO     | time since job start (5834s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:51:50,044 | INFO     | monitor loop #375: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:51:50,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:51:50,119 | INFO     | time since job start (5836s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:51:52,127 | INFO     | time since job start (5838s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:51:52,568 | INFO     | monitor loop #376: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:51:52,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:51:54,866 | INFO     | PID=774736 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 12:52:52] 2025-10-10 16:51:54,866 | INFO     | .. there are 70 such processes running
[2025-10-10 12:52:52] 2025-10-10 16:51:55,072 | INFO     | monitor loop #377: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:51:55,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:51:55,870 | INFO     | time since job start (5841s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:51:57,582 | INFO     | monitor loop #378: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:51:57,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:51:57,876 | INFO     | time since job start (5843s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:51:59,882 | INFO     | time since job start (5845s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:52:00,089 | INFO     | monitor loop #379: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:52:00,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:52:01,889 | INFO     | time since job start (5847s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:52:02,594 | INFO     | monitor loop #380: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:52:02,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:52:03,905 | INFO     | time since job start (5849s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:52:05,120 | INFO     | monitor loop #381: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:52:05,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:52:05,922 | INFO     | time since job start (5851s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:52:07,629 | INFO     | monitor loop #382: job 0:6836604504 is in state 'finished'
[2025-10-10 12:52:52] 2025-10-10 16:52:07,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:52:52] 2025-10-10 16:52:07,929 | INFO     | time since job start (5853s) is within the limit (172800.0s)
[2025-10-10 12:52:52] 2025-10-10 16:52:08,261 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-10 12:52:52] 2025-10-10 16:52:08,273 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.133937500001
[2025-10-10 12:52:52] 2025-10-10 16:52:08,297 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6836604504/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 12:52:52] 2025-10-10 16:52:08,297 | INFO     | extracted standard info from prmon json
[2025-10-10 12:52:52] 2025-10-10 16:52:08,297 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 12:52:52] 2025-10-10 16:52:08,297 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 12:52:52] 2025-10-10 16:52:08,302 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 12:52:52] 2025-10-10 16:52:08,302 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 12:52:52] 2025-10-10 16:52:08,303 | INFO     | fitting pss+swap vs Time
[2025-10-10 12:52:52] 2025-10-10 16:52:08,303 | INFO     | sum of square deviations: 197206935.20930234
[2025-10-10 12:52:52] 2025-10-10 16:52:08,308 | INFO     | sum of deviations: 8853955173.093021
[2025-10-10 12:52:52] 2025-10-10 16:52:08,308 | INFO     | mean x: 1760112337.5581396
[2025-10-10 12:52:52] 2025-10-10 16:52:08,308 | INFO     | mean y: 2097293.081395349
[2025-10-10 12:52:52] 2025-10-10 16:52:08,308 | INFO     | -- intersect: -79021268288.90468
[2025-10-10 12:52:52] 2025-10-10 16:52:08,308 | INFO     | intersect: -79021268288.90468
[2025-10-10 12:52:52] 2025-10-10 16:52:08,308 | INFO     | chi2: 0.5476467072603779
[2025-10-10 12:52:52] 2025-10-10 16:52:08,308 | INFO     | -- intersect: -79021268288.90468
[2025-10-10 12:52:52] 2025-10-10 16:52:08,308 | INFO     | current memory leak: 44.90 B/s (using 86 data points, chi2=0.55)
[2025-10-10 12:52:52] 2025-10-10 16:52:08,308 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | ..............................
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | . Timing measurements:
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | . get job = 0 s
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | . initial setup = 5 s
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | . payload setup = 52 s
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | . stage-in = 0 s
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | . payload execution = 5687 s
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | . stage-out = 1 s
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | . log creation = 0 s
[2025-10-10 12:52:52] 2025-10-10 16:52:08,309 | INFO     | ..............................
[2025-10-10 12:52:52] 2025-10-10 16:52:08,423 | INFO     | 
[2025-10-10 12:52:52] 2025-10-10 16:52:08,423 | INFO     | job summary report
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | --------------------------------------------------
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | PanDA job id: 6836604504
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | task id: 46676269
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | errors: (none)
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | pilot state: finished 
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | transexitcode: 0
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | exeerrorcode: 0
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | exeerrordiag: 
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | exitcode: 0
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | exitmsg: OK
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | cpuconsumptiontime: 22651 s
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | nevents: 400
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | neventsw: 0
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | pid: 787681
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | pgrp: 787681
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | corecount: 8
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | event service: False
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | sizes: {0: 2348684, 1: 2348883, 2: 2348883, 12: 2348911, 23: 2348939, 34: 2349357, 45: 2349385, 5744: 2376001, 5746: 2384999, 5747: 2385055, 5773: 2385249}
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | --------------------------------------------------
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | 
[2025-10-10 12:52:52] 2025-10-10 16:52:08,424 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,538 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | job 6836604504 has completed (purged errors)
[2025-10-10 12:52:52] 2025-10-10 16:52:08,539 | INFO     | overall cleanup function is called
[2025-10-10 12:52:52] 2025-10-10 16:52:09,550 | INFO     | --- collectZombieJob: --- 10, [787681]
[2025-10-10 12:52:52] 2025-10-10 16:52:09,550 | INFO     | zombie collector waiting for pid 787681
[2025-10-10 12:52:52] 2025-10-10 16:52:09,550 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 12:52:52] 2025-10-10 16:52:09,550 | INFO     | collected zombie processes
[2025-10-10 12:52:52] 2025-10-10 16:52:09,550 | INFO     | will attempt to kill all subprocesses of pid=787681
[2025-10-10 12:52:52] 2025-10-10 16:52:10,900 | INFO     | process IDs to be killed: [787681] (in reverse order)
[2025-10-10 12:52:52] 2025-10-10 16:52:11,754 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 12:52:52] 2025-10-10 16:52:11,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 12:52:52] 2025-10-10 16:52:11,802 | INFO     | did not find any defunct processes belonging to 787681
[2025-10-10 12:52:52] 2025-10-10 16:52:11,829 | INFO     | did not find any defunct processes belonging to 787681
[2025-10-10 12:52:52] 2025-10-10 16:52:11,829 | INFO     | ready for new job
[2025-10-10 12:52:52] 2025-10-10 16:52:11,829 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 12:52:52] 2025-10-10 16:52:11,831 | INFO     | ***************************************
[2025-10-10 12:52:52] 2025-10-10 16:52:11,831 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 12:52:52] 2025-10-10 16:52:11,831 | INFO     | ***************************************
[2025-10-10 12:52:52] 2025-10-10 16:52:11,831 | INFO     | 
[2025-10-10 12:52:52] 2025-10-10 16:52:11,847 | INFO     | architecture information:
[2025-10-10 12:52:52] 2025-10-10 16:52:11,848 | INFO     | executing command: cat /etc/os-release
[2025-10-10 12:52:52] 2025-10-10 16:52:11,884 | INFO     | cat /etc/os-release:
[2025-10-10 12:52:52] NAME="CentOS Linux"
[2025-10-10 12:52:52] VERSION="7 (Core)"
[2025-10-10 12:52:52] ID="centos"
[2025-10-10 12:52:52] ID_LIKE="rhel fedora"
[2025-10-10 12:52:52] VERSION_ID="7"
[2025-10-10 12:52:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 12:52:52] ANSI_COLOR="0;31"
[2025-10-10 12:52:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 12:52:52] HOME_URL="https://www.centos.org/"
[2025-10-10 12:52:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 12:52:52] 
[2025-10-10 12:52:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 12:52:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 12:52:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 12:52:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 12:52:52] 
[2025-10-10 12:52:52] 2025-10-10 16:52:11,884 | INFO     | ***************************************
[2025-10-10 12:52:52] 2025-10-10 16:52:12,389 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-10 12:52:52] 2025-10-10 16:52:12,504 | INFO     | sufficient remaining disk space (169659596800 B)
[2025-10-10 12:52:52] 2025-10-10 16:52:12,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 12:52:52] 2025-10-10 16:52:12,504 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 12:52:52] 2025-10-10 16:52:12,504 | INFO     | update_server=False
[2025-10-10 12:52:52] 2025-10-10 16:52:12,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 12:52:52] 2025-10-10 16:52:12,566 | INFO     | all data control threads have been joined
[2025-10-10 12:52:52] 2025-10-10 16:52:12,689 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 12:52:52] 2025-10-10 16:52:12,689 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 12:52:52] 2025-10-10 16:52:12,689 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:52:52] 2025-10-10 16:52:12,689 | INFO     | will abort loop
[2025-10-10 12:52:52] 2025-10-10 16:52:13,378 | INFO     | all job control threads have been joined
[2025-10-10 12:52:52] 2025-10-10 16:52:13,441 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:52:52] 2025-10-10 16:52:13,511 | INFO     | [job] retrieve thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:13,572 | INFO     | [data] control thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:13,582 | INFO     | all payload control threads have been joined
[2025-10-10 12:52:52] 2025-10-10 16:52:13,699 | INFO     | [job] job monitor thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:13,777 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:13,824 | INFO     | [payload] validate_post thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:13,886 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:13,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 12:52:52] 2025-10-10 16:52:14,022 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:14,223 | INFO     | [payload] failed_post thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:14,385 | INFO     | [job] control thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:14,458 | INFO     | [job] queue monitor thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:14,491 | INFO     | [job] validate thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:14,587 | INFO     | [payload] control thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:14,630 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:14,907 | INFO     | [data] copytool_in thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:15,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 12:52:52] 2025-10-10 16:52:15,964 | INFO     | [data] copytool_out thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:19,125 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 12:52:52] 2025-10-10 16:52:42,748 | INFO     | PID=774736 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 12:52:52] 2025-10-10 16:52:42,750 | INFO     | .. there are 70 such processes running
[2025-10-10 12:52:52] 2025-10-10 16:52:42,750 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 12:52:52] 2025-10-10 16:52:42,751 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 12:52:52] 2025-10-10 16:52:42,751 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 12:52:52] 2025-10-10 16:52:44,641 | INFO     | [monitor] cgroup control has ended
[2025-10-10 12:52:52] 2025-10-10 16:52:46,071 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704184977216)>', '<ExcThread(monitor, started 140703397050112)>']
[2025-10-10 12:52:52] 2025-10-10 16:52:46,777 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 12:52:52] 2025-10-10 16:52:46,777 | INFO     | [monitor] control thread has ended
[2025-10-10 12:52:52] 2025-10-10 16:52:51,097 | INFO     | all workflow threads have been joined
[2025-10-10 12:52:52] 2025-10-10 16:52:51,097 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 12:52:52] 2025-10-10 16:52:51,097 | INFO     | traces error code: 0
[2025-10-10 12:52:52] 2025-10-10 16:52:51,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 12:52:52] 2025-10-10 16:52:51,463 [wrapper] ==== pilot stdout END ====
[2025-10-10 12:52:52] 2025-10-10 16:52:51,496 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 12:52:52] 2025-10-10 16:52:51,508 [wrapper] pilotpid: 774736
[2025-10-10 12:52:52] 2025-10-10 16:52:51,522 [wrapper] Pilot exit status: 0
[2025-10-10 12:52:52] 2025-10-10 16:52:51,701 [wrapper] pandaids: 6836604504
[2025-10-10 12:52:52] 2025-10-10 16:52:52,067 [wrapper] cleanup supervisor_pilot 1400771 774737
[2025-10-10 12:52:52] 2025-10-10 16:52:52,116 [wrapper] Test setup, not cleaning
[2025-10-10 12:52:52] 2025-10-10 16:52:52,158 [wrapper] apfmon messages muted
[2025-10-10 12:52:52] 2025-10-10 16:52:52,214 [wrapper] ==== wrapper stdout END ====
[2025-10-10 12:52:52] 2025-10-10 16:52:52,244 [wrapper] ==== wrapper stderr END ====
[2025-10-10 12:52:52]  *** Error codes and diagnostics ***
[2025-10-10 12:52:52]     "exeErrorCode": 0,
[2025-10-10 12:52:52]     "exeErrorDiag": "",
[2025-10-10 12:52:52]     "pilotErrorCode": 0,
[2025-10-10 12:52:52]     "pilotErrorDiag": "",
[2025-10-10 12:52:52]  *** Listing of results directory ***
[2025-10-10 12:52:52] total 417052
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas    557409 Oct  8 18:57 pilot3.tar.gz
[2025-10-10 12:52:52] -rwx------. 1 boincer umatlas     36292 Oct  8 19:15 runpilot2-wrapper.sh
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas      5112 Oct  8 19:15 queuedata.json
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas       100 Oct 10 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 12:52:52] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 11:13 run_atlas
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas       105 Oct 10 11:13 job.xml
[2025-10-10 12:52:52] -rw-r--r--. 2 boincer umatlas 221899916 Oct 10 11:13 EVNT.46676267._000415.pool.root.1
[2025-10-10 12:52:52] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 11:13 start_atlas.sh
[2025-10-10 12:52:52] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 11:13 shared
[2025-10-10 12:52:52] -rw-r--r--. 2 boincer umatlas    569678 Oct 10 11:13 input.tar.gz
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas         0 Oct 10 11:13 boinc_lockfile
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas      2549 Oct 10 11:13 pandaJob.out
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas    975533 Oct 10 11:14 agis_schedconf.cvmfs.json
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas   1560580 Oct 10 11:14 agis_ddmendpoints.agis.ALL.json
[2025-10-10 12:52:52] drwx------. 5 boincer umatlas      4096 Oct 10 11:14 pilot3
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas      7163 Oct 10 12:46 init_data.xml
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas 199043098 Oct 10 12:51 HITS.46676269._010241.pool.root.1
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas       529 Oct 10 12:51 boinc_task_state.xml
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas      1046 Oct 10 12:51 memory_monitor_summary.json
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas    351076 Oct 10 12:51 log.46676269._010241.job.log.tgz.1
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas      7798 Oct 10 12:52 heartbeat.json
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas        95 Oct 10 12:52 pilot_heartbeat.json
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 12:52 boinc_mmap_file
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas        27 Oct 10 12:52 wrapper_checkpoint.txt
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas      5010 Oct 10 12:52 pilotlog.txt
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas    760862 Oct 10 12:52 log.46676269._010241.job.log.1
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas       357 Oct 10 12:52 output.list
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas       620 Oct 10 12:52 runtime_log
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas   1126400 Oct 10 12:52 result.tar.gz
[2025-10-10 12:52:52] -rw-------. 1 boincer umatlas       656 Oct 10 12:52 uwAODmRYsQ8n9Rq4apOajLDm4fhM0noT9bVof3QYDm38MMDmK9Snjn.diag
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas      8698 Oct 10 12:52 runtime_log.err
[2025-10-10 12:52:52] -rw-r--r--. 1 boincer umatlas     22337 Oct 10 12:52 stderr.txt
[2025-10-10 12:52:53] HITS file was successfully produced:
[2025-10-10 12:52:53] -rw-------. 1 boincer umatlas 199043098 Oct 10 12:51 shared/HITS.pool.root.1
[2025-10-10 12:52:53]  *** Contents of shared directory: ***
[2025-10-10 12:52:53] total 412760
[2025-10-10 12:52:53] -rw-r--r--. 2 boincer umatlas 221899916 Oct 10 11:13 ATLAS.root_0
[2025-10-10 12:52:53] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 11:13 start_atlas.sh
[2025-10-10 12:52:53] -rw-r--r--. 2 boincer umatlas    569678 Oct 10 11:13 input.tar.gz
[2025-10-10 12:52:53] -rw-------. 1 boincer umatlas 199043098 Oct 10 12:51 HITS.pool.root.1
[2025-10-10 12:52:53] -rw-------. 1 boincer umatlas   1126400 Oct 10 12:52 result.tar.gz
12:52:54 (768127): run_atlas exited; CPU time 22824.608564
12:52:54 (768127): called boinc_finish(0)

</stderr_txt>
]]>

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