Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:12:46 (2372894): wrapper (7.7.26015): starting
11:12:46 (2372894): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 11:12:46] Arguments: --nthreads 8
[2025-10-10 11:12:46] Threads: 8
[2025-10-10 11:12:46] Checking for CVMFS
[2025-10-10 11:12:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 11:12:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 11:12:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 11:12:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 11:12:48] 2.13.2.0 1061588 19916 277940 151550 3 536 25129082 40960001 48795 16776704 0 71322498 99.790 39449542 15842 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 11:12:48] CVMFS is ok
[2025-10-10 11:12:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 11:12:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 11:12:48] Further information can be found at the LHC@home message board.
[2025-10-10 11:12:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 11:12:48] Checking for apptainer binary...
[2025-10-10 11:12:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 11:12:48] Running /usr/bin/apptainer --version
[2025-10-10 11:12:49] apptainer version 1.4.3-1.el9
[2025-10-10 11:12:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 11:12:50] c-1-1.aglt2.org
[2025-10-10 11:12:50] apptainer works
[2025-10-10 11:12:50] Set ATHENA_PROC_NUMBER=8
[2025-10-10 11:12:50] Set ATHENA_CORE_NUMBER=8
[2025-10-10 11:12:50] Starting ATLAS job with PandaID=6837508378
[2025-10-10 11:12:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:00:06 (2372894): BOINC client no longer exists - exiting
16:00:06 (2372894): timer handler: client dead, exiting
16:13:23 (4090864): wrapper (7.7.26015): starting
16:13:23 (4090864): wrapper: running run_atlas (--nthreads 11)
[2025-10-10 16:13:23] Arguments: --nthreads 11
[2025-10-10 16:13:23] Threads: 11
[2025-10-10 16:13:23] This job has been restarted, cleaning up previous attempt
[2025-10-10 16:13:23] Checking for CVMFS
[2025-10-10 16:13:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 16:13:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 16:13:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 16:13:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 16:13:26] 2.13.2.0 1061588 20216 283784 151559 3 602 33493135 40960001 47800 16776704 0 73138042 99.792 39953640 15811 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 16:13:26] CVMFS is ok
[2025-10-10 16:13:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 16:13:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 16:13:26] Further information can be found at the LHC@home message board.
[2025-10-10 16:13:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 16:13:26] Checking for apptainer binary...
[2025-10-10 16:13:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 16:13:26] Running /usr/bin/apptainer --version
[2025-10-10 16:13:27] apptainer version 1.4.3-1.el9
[2025-10-10 16:13:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 16:13:27] c-1-1.aglt2.org
[2025-10-10 16:13:27] apptainer works
[2025-10-10 16:13:28] Set ATHENA_PROC_NUMBER=11
[2025-10-10 16:13:28] Set ATHENA_CORE_NUMBER=11
[2025-10-10 16:13:28] Starting ATLAS job with PandaID=6837508378
[2025-10-10 16:13:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 01:49:04]  *** The last 200 lines of the pilot log: ***
[2025-10-11 01:49:04] 2025-10-11 05:00:17,302 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 01:49:04] 2025-10-11 05:00:17,302 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 01:49:04] 2025-10-11 05:00:17,302 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 01:49:04] 2025-10-11 05:00:17,824 | INFO     | fitting pss+swap vs Time
[2025-10-11 01:49:04] 2025-10-11 05:00:17,825 | INFO     | sum of square deviations: 42108507717.735344
[2025-10-11 01:49:04] 2025-10-11 05:00:18,206 | INFO     | sum of deviations: 69661480673.36975
[2025-10-11 01:49:04] 2025-10-11 05:00:18,207 | INFO     | mean x: 1760143039.3424125
[2025-10-11 01:49:04] 2025-10-11 05:00:18,207 | INFO     | mean y: 2588710.492217899
[2025-10-11 01:49:04] 2025-10-11 05:00:18,207 | INFO     | -- intersect: -2909273451.4118214
[2025-10-11 01:49:04] 2025-10-11 05:00:18,207 | INFO     | intersect: -2909273451.4118214
[2025-10-11 01:49:04] 2025-10-11 05:00:18,286 | INFO     | chi2: 6.324312058589794
[2025-10-11 01:49:04] 2025-10-11 05:00:18,287 | INFO     | sum of square deviations: 40891714636.65241
[2025-10-11 01:49:04] 2025-10-11 05:00:18,425 | INFO     | sum of deviations: 217537252255.25732
[2025-10-11 01:49:04] 2025-10-11 05:00:18,425 | INFO     | mean x: 1760142886.8506875
[2025-10-11 01:49:04] 2025-10-11 05:00:18,426 | INFO     | mean y: 2607207.121807466
[2025-10-11 01:49:04] 2025-10-11 05:00:18,426 | INFO     | -- intersect: -9361065864.169111
[2025-10-11 01:49:04] 2025-10-11 05:00:18,426 | INFO     | intersect: -9361065864.169111
[2025-10-11 01:49:04] 2025-10-11 05:00:18,427 | INFO     | chi2: 2.941438110164144
[2025-10-11 01:49:04] 2025-10-11 05:00:18,427 | INFO     | current chi2=2.941438110164144 (change=53.489990960059764 %)
[2025-10-11 01:49:04] 2025-10-11 05:00:18,445 | INFO     | sum of square deviations: 39698409512.23583
[2025-10-11 01:49:04] 2025-10-11 05:00:18,454 | INFO     | sum of deviations: 214455837847.52768
[2025-10-11 01:49:04] 2025-10-11 05:00:18,455 | INFO     | mean x: 1760142734.3472223
[2025-10-11 01:49:04] 2025-10-11 05:00:18,455 | INFO     | mean y: 2606813.3055555555
[2025-10-11 01:49:04] 2025-10-11 05:00:18,455 | INFO     | -- intersect: -9505907242.13355
[2025-10-11 01:49:04] 2025-10-11 05:00:18,455 | INFO     | intersect: -9505907242.13355
[2025-10-11 01:49:04] 2025-10-11 05:00:18,456 | INFO     | chi2: 2.9418442653135486
[2025-10-11 01:49:04] 2025-10-11 05:00:18,456 | INFO     | current chi2=2.9418442653135486 (change=-0.013808046751054043 %)
[2025-10-11 01:49:04] 2025-10-11 05:00:18,457 | INFO     | right removable region: 503
[2025-10-11 01:49:04] 2025-10-11 05:00:18,458 | INFO     | sum of square deviations: 40891450506.652405
[2025-10-11 01:49:04] 2025-10-11 05:00:18,466 | INFO     | sum of deviations: -64778399669.34187
[2025-10-11 01:49:04] 2025-10-11 05:00:18,467 | INFO     | mean x: 1760143191.8506875
[2025-10-11 01:49:04] 2025-10-11 05:00:18,467 | INFO     | mean y: 2605523.5481335954
[2025-10-11 01:49:04] 2025-10-11 05:00:18,467 | INFO     | -- intersect: 2790945329.161675
[2025-10-11 01:49:04] 2025-10-11 05:00:18,467 | INFO     | intersect: 2790945329.161675
[2025-10-11 01:49:04] 2025-10-11 05:00:18,468 | INFO     | chi2: 3.8383599456382704
[2025-10-11 01:49:04] 2025-10-11 05:00:18,468 | INFO     | current chi2=3.8383599456382704 (change=39.30786605596192 %)
[2025-10-11 01:49:04] 2025-10-11 05:00:18,469 | INFO     | sum of square deviations: 39698068157.997734
[2025-10-11 01:49:04] 2025-10-11 05:00:18,484 | INFO     | sum of deviations: -110825000205.07144
[2025-10-11 01:49:04] 2025-10-11 05:00:18,484 | INFO     | mean x: 1760143344.359127
[2025-10-11 01:49:04] 2025-10-11 05:00:18,484 | INFO     | mean y: 2611401.9285714286
[2025-10-11 01:49:04] 2025-10-11 05:00:18,484 | INFO     | -- intersect: 4916399290.124744
[2025-10-11 01:49:04] 2025-10-11 05:00:18,484 | INFO     | intersect: 4916399290.124744
[2025-10-11 01:49:04] 2025-10-11 05:00:18,485 | INFO     | chi2: 3.571571890601907
[2025-10-11 01:49:04] 2025-10-11 05:00:18,486 | INFO     | current chi2=3.571571890601907 (change=6.950574172688747 %)
[2025-10-11 01:49:04] 2025-10-11 05:00:18,486 | INFO     | left removable region: 20
[2025-10-11 01:49:04] 2025-10-11 05:00:18,487 | INFO     | sum of square deviations: 34939784553.5197
[2025-10-11 01:49:04] 2025-10-11 05:00:18,495 | INFO     | sum of deviations: 4250079761.6811595
[2025-10-11 01:49:04] 2025-10-11 05:00:18,495 | INFO     | mean x: 1760143313.8674948
[2025-10-11 01:49:04] 2025-10-11 05:00:18,495 | INFO     | mean y: 2634413.4637681157
[2025-10-11 01:49:04] 2025-10-11 05:00:18,495 | INFO     | -- intersect: -211469639.30930677
[2025-10-11 01:49:04] 2025-10-11 05:00:18,495 | INFO     | intersect: -211469639.30930677
[2025-10-11 01:49:04] 2025-10-11 05:00:18,496 | INFO     | chi2: 0.023308189303440797
[2025-10-11 01:49:04] 2025-10-11 05:00:18,497 | INFO     | -- intersect: -211469639.30930677
[2025-10-11 01:49:04] 2025-10-11 05:00:18,497 | INFO     | current memory leak: 0.12 B/s (using 483 data points, chi2=0.02)
[2025-10-11 01:49:04] 2025-10-11 05:00:18,498 | INFO     | could have reported an average CPU frequency of 1788 MHz (20 samples)
[2025-10-11 01:49:04] 2025-10-11 05:00:18,498 | INFO     | ..............................
[2025-10-11 01:49:04] 2025-10-11 05:00:18,499 | INFO     | . Timing measurements:
[2025-10-11 01:49:04] 2025-10-11 05:00:18,499 | INFO     | . get job = 0 s
[2025-10-11 01:49:04] 2025-10-11 05:00:18,499 | INFO     | . initial setup = 4 s
[2025-10-11 01:49:04] 2025-10-11 05:00:18,499 | INFO     | . payload setup = 35 s
[2025-10-11 01:49:04] 2025-10-11 05:00:18,499 | INFO     | . stage-in = 0 s
[2025-10-11 01:49:04] 2025-10-11 05:00:18,499 | INFO     | . payload execution = 31367 s
[2025-10-11 01:49:04] 2025-10-11 05:00:18,499 | INFO     | . stage-out = 15 s
[2025-10-11 01:49:04] 2025-10-11 05:00:18,499 | INFO     | . log creation = 2 s
[2025-10-11 01:49:04] 2025-10-11 05:00:18,499 | INFO     | ..............................
[2025-10-11 01:49:04] 2025-10-11 05:00:18,640 | INFO     | 
[2025-10-11 01:49:04] 2025-10-11 05:00:18,640 | INFO     | job summary report
[2025-10-11 01:49:04] 2025-10-11 05:00:18,640 | INFO     | --------------------------------------------------
[2025-10-11 01:49:04] 2025-10-11 05:00:18,640 | INFO     | PanDA job id: 6837508378
[2025-10-11 01:49:04] 2025-10-11 05:00:18,640 | INFO     | task id: 46676269
[2025-10-11 01:49:04] 2025-10-11 05:00:18,641 | INFO     | errors: (none)
[2025-10-11 01:49:04] 2025-10-11 05:00:18,641 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 01:49:04] 2025-10-11 05:00:18,641 | INFO     | pilot state: finished 
[2025-10-11 01:49:04] 2025-10-11 05:00:18,641 | INFO     | transexitcode: 0
[2025-10-11 01:49:04] 2025-10-11 05:00:18,641 | INFO     | exeerrorcode: 0
[2025-10-11 01:49:04] 2025-10-11 05:00:18,641 | INFO     | exeerrordiag: 
[2025-10-11 01:49:04] 2025-10-11 05:00:18,641 | INFO     | exitcode: 0
[2025-10-11 01:49:04] 2025-10-11 05:00:18,641 | INFO     | exitmsg: OK
[2025-10-11 01:49:04] 2025-10-11 05:00:18,642 | INFO     | cpuconsumptiontime: 63274 s
[2025-10-11 01:49:04] 2025-10-11 05:00:18,642 | INFO     | nevents: 400
[2025-10-11 01:49:04] 2025-10-11 05:00:18,642 | INFO     | neventsw: 0
[2025-10-11 01:49:04] 2025-10-11 05:00:18,642 | INFO     | pid: 4123899
[2025-10-11 01:49:04] 2025-10-11 05:00:18,642 | INFO     | pgrp: 4123899
[2025-10-11 01:49:04] 2025-10-11 05:00:18,642 | INFO     | corecount: 11
[2025-10-11 01:49:04] 2025-10-11 05:00:18,642 | INFO     | event service: False
[2025-10-11 01:49:04] 2025-10-11 05:00:18,642 | INFO     | sizes: {0: 2348029, 1: 2348630, 2: 2348714, 3: 2348742, 4: 2348969, 5: 2348969, 16: 2349153, 27: 2349181, 35: 2349471, 39: 2349499, 31411: 2386377, 31414: 2386656,
[2025-10-11 01:49:04] 2025-10-11 05:00:18,642 | INFO     | --------------------------------------------------
[2025-10-11 01:49:04] 2025-10-11 05:00:18,643 | INFO     | 
[2025-10-11 01:49:04] 2025-10-11 05:00:18,643 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 01:49:04] 2025-10-11 05:00:18,759 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,762 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,762 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,762 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,762 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,762 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,762 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,785 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,785 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,785 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,786 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,786 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,786 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,786 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,786 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 01:49:04] 2025-10-11 05:00:18,786 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,786 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 01:49:04] 2025-10-11 05:00:18,787 | INFO     | job 6837508378 has completed (purged errors)
[2025-10-11 01:49:04] 2025-10-11 05:00:18,787 | INFO     | overall cleanup function is called
[2025-10-11 01:49:04] 2025-10-11 05:00:19,801 | INFO     | --- collectZombieJob: --- 10, [4123899]
[2025-10-11 01:49:04] 2025-10-11 05:00:19,803 | INFO     | zombie collector waiting for pid 4123899
[2025-10-11 01:49:04] 2025-10-11 05:00:19,803 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 01:49:04] 2025-10-11 05:00:19,803 | INFO     | collected zombie processes
[2025-10-11 01:49:04] 2025-10-11 05:00:19,803 | INFO     | will attempt to kill all subprocesses of pid=4123899
[2025-10-11 01:49:04] 2025-10-11 05:00:35,836 | INFO     | process IDs to be killed: [4123899] (in reverse order)
[2025-10-11 01:49:04] 2025-10-11 05:00:36,252 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 01:49:04] 2025-10-11 05:00:36,252 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 01:49:04] 2025-10-11 05:00:36,337 | INFO     | did not find any defunct processes belonging to 4123899
[2025-10-11 01:49:04] 2025-10-11 05:00:36,494 | INFO     | did not find any defunct processes belonging to 4123899
[2025-10-11 01:49:04] 2025-10-11 05:00:36,495 | INFO     | ready for new job
[2025-10-11 01:49:04] 2025-10-11 05:00:36,495 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 01:49:04] 2025-10-11 05:00:36,507 | INFO     | ***************************************
[2025-10-11 01:49:04] 2025-10-11 05:00:36,508 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 01:49:04] 2025-10-11 05:00:36,508 | INFO     | ***************************************
[2025-10-11 01:49:04] 2025-10-11 05:00:36,508 | INFO     | 
[2025-10-11 01:49:04] 2025-10-11 05:00:36,537 | INFO     | architecture information:
[2025-10-11 01:49:04] 2025-10-11 05:00:36,545 | INFO     | executing command: cat /etc/os-release
[2025-10-11 01:49:04] 2025-10-11 05:00:36,750 | INFO     | cat /etc/os-release:
[2025-10-11 01:49:04] NAME="CentOS Linux"
[2025-10-11 01:49:04] VERSION="7 (Core)"
[2025-10-11 01:49:04] ID="centos"
[2025-10-11 01:49:04] ID_LIKE="rhel fedora"
[2025-10-11 01:49:04] VERSION_ID="7"
[2025-10-11 01:49:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 01:49:04] ANSI_COLOR="0;31"
[2025-10-11 01:49:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 01:49:04] HOME_URL="https://www.centos.org/"
[2025-10-11 01:49:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 01:49:04] 
[2025-10-11 01:49:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 01:49:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 01:49:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 01:49:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 01:49:04] 
[2025-10-11 01:49:04] 2025-10-11 05:00:36,751 | INFO     | ***************************************
[2025-10-11 01:49:04] 2025-10-11 05:00:37,270 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 01:49:04] 2025-10-11 05:00:37,443 | INFO     | sufficient remaining disk space (104703459328 B)
[2025-10-11 01:49:04] 2025-10-11 05:00:37,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 01:49:04] 2025-10-11 05:00:37,448 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 01:49:04] 2025-10-11 05:00:37,448 | INFO     | update_server=False
[2025-10-11 01:49:04] 2025-10-11 05:00:37,449 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 01:49:04] 2025-10-11 05:00:37,449 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 01:49:04] 2025-10-11 05:00:37,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 01:49:04] 2025-10-11 05:00:37,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 01:49:04] 2025-10-11 05:00:37,505 | INFO     | all payload control threads have been joined
[2025-10-11 01:49:04] 2025-10-11 05:00:37,761 | INFO     | all data control threads have been joined
[2025-10-11 01:49:04] 2025-10-11 05:00:37,938 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 01:49:04] 2025-10-11 05:00:37,938 | INFO     | aborting loop
[2025-10-11 01:49:04] 2025-10-11 05:00:38,464 | INFO     | [job] retrieve thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:38,473 | INFO     | [job] queue monitor thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:38,523 | INFO     | [payload] control thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:38,581 | INFO     | [payload] failed_post thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:38,582 | INFO     | [payload] validate_post thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:38,651 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:38,722 | INFO     | all job control threads have been joined
[2025-10-11 01:49:04] 2025-10-11 05:00:38,770 | INFO     | [data] control thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:38,944 | INFO     | [job] job monitor thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:39,152 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:39,153 | INFO     | [data] copytool_in thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:39,254 | INFO     | [job] validate thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:39,484 | INFO     | [data] copytool_out thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:39,639 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:39,708 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:39,747 | INFO     | [job] control thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:41,507 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 01:49:04] 2025-10-11 05:00:56,823 | INFO     | PID=4103177 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 01:49:04] 2025-10-11 05:00:56,824 | INFO     | .. there are 83 such processes running
[2025-10-11 01:49:04] 2025-10-11 05:00:56,825 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 01:49:04] 2025-10-11 05:00:56,825 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 01:49:04] 2025-10-11 05:00:56,825 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 01:49:04] 2025-10-11 05:01:22,575 | INFO     | [monitor] cgroup control has ended
[2025-10-11 01:49:04] 2025-10-11 05:01:24,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140254239876928)>', '<ExcThread(monitor, started 140253742483200)>']
[2025-10-11 01:49:04] 2025-10-11 05:01:25,267 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 01:49:04] 2025-10-11 05:01:25,267 | INFO     | [monitor] control thread has ended
[2025-10-11 01:49:04] 2025-10-11 05:01:29,642 | INFO     | all workflow threads have been joined
[2025-10-11 01:49:04] 2025-10-11 05:01:29,643 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 01:49:04] 2025-10-11 05:01:29,643 | INFO     | traces error code: 0
[2025-10-11 01:49:04] 2025-10-11 05:01:29,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 01:49:04] 2025-10-11 05:01:35,259 [wrapper] ==== pilot stdout END ====
[2025-10-11 01:49:04] 2025-10-11 05:01:35,278 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 01:49:04] 2025-10-11 05:01:35,326 [wrapper] pilotpid: 4103177
[2025-10-11 01:49:04] 2025-10-11 05:01:35,349 [wrapper] Pilot exit status: 0
[2025-10-11 01:49:04] 2025-10-11 05:01:35,667 [wrapper] pandaids: 6837508378 6837508378
[2025-10-11 01:49:04] 2025-10-11 05:01:36,575 [wrapper] cleanup supervisor_pilot 2038874 4103178
[2025-10-11 01:49:04] 2025-10-11 05:01:36,606 [wrapper] Test setup, not cleaning
[2025-10-11 01:49:04] 2025-10-11 05:01:36,626 [wrapper] apfmon messages muted
[2025-10-11 01:49:04] 2025-10-11 05:01:36,674 [wrapper] ==== wrapper stdout END ====
[2025-10-11 01:49:04] 2025-10-11 05:01:36,719 [wrapper] ==== wrapper stderr END ====
[2025-10-11 01:49:04]  *** Error codes and diagnostics ***
[2025-10-11 01:49:04]     "exeErrorCode": 0,
[2025-10-11 01:49:04]     "exeErrorDiag": "",
[2025-10-11 01:49:04]     "pilotErrorCode": 0,
[2025-10-11 01:49:04]     "pilotErrorDiag": "",
[2025-10-11 01:49:04]  *** Listing of results directory ***
[2025-10-11 01:49:04] total 620636
[2025-10-11 01:49:04] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 02:56 pilot3.tar.gz
[2025-10-11 01:49:04] -rwx------. 1 boincer umatlas     36292 Oct 10 02:58 runpilot2-wrapper.sh
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 02:58 queuedata.json
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas       100 Oct 10 11:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 01:49:04] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 11:12 run_atlas
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas       105 Oct 10 11:12 job.xml
[2025-10-11 01:49:04] -rw-r--r--. 3 boincer umatlas 219254270 Oct 10 11:12 EVNT.46676267._001393.pool.root.1
[2025-10-11 01:49:04] -rw-r--r--. 3 boincer umatlas 219254270 Oct 10 11:12 ATLAS.root_0
[2025-10-11 01:49:04] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 11:12 shared
[2025-10-11 01:49:04] -rw-r--r--. 2 boincer umatlas    569673 Oct 10 11:12 input.tar.gz
[2025-10-11 01:49:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 11:12 start_atlas.sh
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas         0 Oct 10 11:12 boinc_lockfile
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 16:13 pandaJob.out
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas    975541 Oct 10 16:14 agis_schedconf.cvmfs.json
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas 185931141 Oct 11 00:54 HITS.46676269._034249.pool.root.1
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas       532 Oct 11 00:55 boinc_task_state.xml
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas      1041 Oct 11 00:58 memory_monitor_summary.json
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas   1560580 Oct 11 00:59 agis_ddmendpoints.agis.ALL.json
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas    659067 Oct 11 00:59 log.46676269._034249.job.log.tgz.1
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas      7820 Oct 11 01:00 heartbeat.json
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas        96 Oct 11 01:00 pilot_heartbeat.json
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas      4825 Oct 11 01:01 pilotlog.txt
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas   2935525 Oct 11 01:01 log.46676269._034249.job.log.1
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas       357 Oct 11 01:01 output.list
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas       620 Oct 11 01:01 runtime_log
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas   3614720 Oct 11 01:01 result.tar.gz
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas      8776 Oct 11 01:01 runtime_log.err
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas       782 Oct 11 01:01 pFOODmFGMR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmSUPMDmZpNymm.diag
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas      6842 Oct 11 01:45 init_data.xml
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas        29 Oct 11 01:49 wrapper_checkpoint.txt
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 01:49 boinc_mmap_file
[2025-10-11 01:49:04] -rw-r--r--. 1 boincer umatlas     23317 Oct 11 01:49 stderr.txt
[2025-10-11 01:49:04] HITS file was successfully produced:
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas 185931141 Oct 11 00:54 shared/HITS.pool.root.1
[2025-10-11 01:49:04]  *** Contents of shared directory: ***
[2025-10-11 01:49:04] total 399804
[2025-10-11 01:49:04] -rw-r--r--. 3 boincer umatlas 219254270 Oct 10 11:12 ATLAS.root_0
[2025-10-11 01:49:04] -rw-r--r--. 2 boincer umatlas    569673 Oct 10 11:12 input.tar.gz
[2025-10-11 01:49:04] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 11:12 start_atlas.sh
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas 185931141 Oct 11 00:54 HITS.pool.root.1
[2025-10-11 01:49:04] -rw-------. 1 boincer umatlas   3614720 Oct 11 01:01 result.tar.gz
01:49:06 (4090864): run_atlas exited; CPU time 65638.572278
01:49:06 (4090864): called boinc_finish(0)

</stderr_txt>
]]>

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