Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:54:44 (11594): wrapper (7.7.26015): starting
10:54:44 (11594): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 10:54:44] Arguments: --nthreads 12
[2025-10-10 10:54:44] Threads: 12
[2025-10-10 10:54:44] Checking for CVMFS
[2025-10-10 10:54:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 10:54:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 10:54:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 10:54:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 10:54:44] 2.11.2.0 2979 220162 95552 151550 3 57 12444939 20275201 1 130560 1 105472826 99.984 13037632 12277 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 10:54:44] CVMFS is ok
[2025-10-10 10:54:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 10:54:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 10:54:44] Further information can be found at the LHC@home message board.
[2025-10-10 10:54:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 10:54:44] Checking for apptainer binary...
[2025-10-10 10:54:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 10:54:44] Running /usr/bin/apptainer --version
[2025-10-10 10:54:44] apptainer version 1.3.2-1.el7
[2025-10-10 10:54:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 10:54:46] c-205-21.aglt2.org
[2025-10-10 10:54:46] apptainer works
[2025-10-10 10:54:46] Set ATHENA_PROC_NUMBER=12
[2025-10-10 10:54:46] Set ATHENA_CORE_NUMBER=12
[2025-10-10 10:54:46] Starting ATLAS job with PandaID=6837397533
[2025-10-10 10:54:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 12:04:31]  *** The last 200 lines of the pilot log: ***
[2025-10-10 12:04:31]  status=None
[2025-10-10 12:04:31]  status_code=0
[2025-10-10 12:04:31]  storage_token=
[2025-10-10 12:04:31]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837397533/log.46676269._030613.job.log.tgz.1
[2025-10-10 12:04:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/fe/log.46676269._030613.job.log.tgz.1
[2025-10-10 12:04:31]  workdir=None
[2025-10-10 12:04:31] ]
[2025-10-10 12:04:31] 2025-10-10 16:03:51,463 | INFO     | transferring file log.46676269._030613.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837397533/log.46676269._030613.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 12:04:31] 2025-10-10 16:03:51,463 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837397533/log.46676269._030613.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._030613.job
[2025-10-10 12:04:31] 2025-10-10 16:03:51,486 | INFO     | adding to output.list: log.46676269._030613.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/fe/log.46676269._030613.job.log.tg
[2025-10-10 12:04:31] 2025-10-10 16:03:51,487 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 12:04:31] 2025-10-10 16:03:51,488 | INFO     | summary of transferred files:
[2025-10-10 12:04:31] 2025-10-10 16:03:51,488 | INFO     |  -- lfn=log.46676269._030613.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 12:04:31] 2025-10-10 16:03:51,488 | INFO     | stage-out finished correctly
[2025-10-10 12:04:31] 2025-10-10 16:03:52,118 | INFO     | time since job start (4131s) is within the limit (172800.0s)
[2025-10-10 12:04:31] 2025-10-10 16:03:53,384 | INFO     | monitor loop #307: job 0:6837397533 is in state 'finished'
[2025-10-10 12:04:31] 2025-10-10 16:03:53,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:04:31] 2025-10-10 16:03:54,124 | INFO     | time since job start (4133s) is within the limit (172800.0s)
[2025-10-10 12:04:31] 2025-10-10 16:03:54,247 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 12:04:31] 2025-10-10 16:03:54,539 | INFO     | job 6837397533 has state=finished
[2025-10-10 12:04:31] 2025-10-10 16:03:54,540 | INFO     | preparing for final server update for job 6837397533 in state='finished'
[2025-10-10 12:04:31] 2025-10-10 16:03:54,540 | INFO     | this job has now completed (state=finished)
[2025-10-10 12:04:31] 2025-10-10 16:03:54,540 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 12:04:31] 2025-10-10 16:03:54,541 | INFO     | log transfer has been attempted: DONE
[2025-10-10 12:04:31] 2025-10-10 16:03:54,541 | INFO     | job 6837397533 has finished - writing final server update
[2025-10-10 12:04:31] 2025-10-10 16:03:54,541 | INFO     | total number of processed events: 400 (read)
[2025-10-10 12:04:31] 2025-10-10 16:03:54,542 | INFO     | executing command: lscpu
[2025-10-10 12:04:31] 2025-10-10 16:03:54,567 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 12:04:31] 2025-10-10 16:03:55,888 | INFO     | monitor loop #308: job 0:6837397533 is in state 'finished'
[2025-10-10 12:04:31] 2025-10-10 16:03:55,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:04:31] 2025-10-10 16:03:56,130 | INFO     | time since job start (4135s) is within the limit (172800.0s)
[2025-10-10 12:04:31] 2025-10-10 16:03:58,135 | INFO     | time since job start (4137s) is within the limit (172800.0s)
[2025-10-10 12:04:31] 2025-10-10 16:03:58,135 | INFO     | 4139s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-10 12:04:31] 2025-10-10 16:03:58,390 | INFO     | monitor loop #309: job 0:6837397533 is in state 'finished'
[2025-10-10 12:04:31] 2025-10-10 16:03:58,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:04:31] 2025-10-10 16:03:59,282 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-10 12:04:31] 2025-10-10 16:03:59,286 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-10 12:04:31] 2025-10-10 16:03:59,295 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837397533/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 12:04:31] 2025-10-10 16:03:59,296 | INFO     | extracted standard info from prmon json
[2025-10-10 12:04:31] 2025-10-10 16:03:59,296 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 12:04:31] 2025-10-10 16:03:59,296 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 12:04:31] 2025-10-10 16:03:59,296 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 12:04:31] 2025-10-10 16:03:59,296 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 12:04:31] 2025-10-10 16:03:59,298 | INFO     | fitting pss+swap vs Time
[2025-10-10 12:04:31] 2025-10-10 16:03:59,298 | INFO     | sum of square deviations: 70364110.0
[2025-10-10 12:04:31] 2025-10-10 16:03:59,298 | INFO     | sum of deviations: -5927367926.000002
[2025-10-10 12:04:31] 2025-10-10 16:03:59,298 | INFO     | mean x: 1760110265.0
[2025-10-10 12:04:31] 2025-10-10 16:03:59,299 | INFO     | mean y: 2751733.8852459015
[2025-10-10 12:04:31] 2025-10-10 16:03:59,299 | INFO     | -- intersect: 148271821448.32297
[2025-10-10 12:04:31] 2025-10-10 16:03:59,299 | INFO     | intersect: 148271821448.32297
[2025-10-10 12:04:31] 2025-10-10 16:03:59,299 | INFO     | chi2: 0.05136100472094395
[2025-10-10 12:04:31] 2025-10-10 16:03:59,299 | INFO     | -- intersect: 148271821448.32297
[2025-10-10 12:04:31] 2025-10-10 16:03:59,299 | INFO     | current memory leak: -84.24 B/s (using 61 data points, chi2=0.05)
[2025-10-10 12:04:31] 2025-10-10 16:03:59,300 | INFO     | could have reported an average CPU frequency of 2069 MHz (6 samples)
[2025-10-10 12:04:31] 2025-10-10 16:03:59,300 | INFO     | ..............................
[2025-10-10 12:04:31] 2025-10-10 16:03:59,300 | INFO     | . Timing measurements:
[2025-10-10 12:04:31] 2025-10-10 16:03:59,300 | INFO     | . get job = 0 s
[2025-10-10 12:04:31] 2025-10-10 16:03:59,300 | INFO     | . initial setup = 2 s
[2025-10-10 12:04:31] 2025-10-10 16:03:59,300 | INFO     | . payload setup = 7 s
[2025-10-10 12:04:31] 2025-10-10 16:03:59,300 | INFO     | . stage-in = 0 s
[2025-10-10 12:04:31] 2025-10-10 16:03:59,300 | INFO     | . payload execution = 4101 s
[2025-10-10 12:04:31] 2025-10-10 16:03:59,301 | INFO     | . stage-out = 0 s
[2025-10-10 12:04:31] 2025-10-10 16:03:59,301 | INFO     | . log creation = 0 s
[2025-10-10 12:04:31] 2025-10-10 16:03:59,301 | INFO     | ..............................
[2025-10-10 12:04:31] 2025-10-10 16:03:59,382 | INFO     | 
[2025-10-10 12:04:31] 2025-10-10 16:03:59,382 | INFO     | job summary report
[2025-10-10 12:04:31] 2025-10-10 16:03:59,382 | INFO     | --------------------------------------------------
[2025-10-10 12:04:31] 2025-10-10 16:03:59,382 | INFO     | PanDA job id: 6837397533
[2025-10-10 12:04:31] 2025-10-10 16:03:59,382 | INFO     | task id: 46676269
[2025-10-10 12:04:31] 2025-10-10 16:03:59,383 | INFO     | errors: (none)
[2025-10-10 12:04:31] 2025-10-10 16:03:59,383 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 12:04:31] 2025-10-10 16:03:59,383 | INFO     | pilot state: finished 
[2025-10-10 12:04:31] 2025-10-10 16:03:59,383 | INFO     | transexitcode: 0
[2025-10-10 12:04:31] 2025-10-10 16:03:59,383 | INFO     | exeerrorcode: 0
[2025-10-10 12:04:31] 2025-10-10 16:03:59,383 | INFO     | exeerrordiag: 
[2025-10-10 12:04:31] 2025-10-10 16:03:59,384 | INFO     | exitcode: 0
[2025-10-10 12:04:31] 2025-10-10 16:03:59,384 | INFO     | exitmsg: OK
[2025-10-10 12:04:31] 2025-10-10 16:03:59,384 | INFO     | cpuconsumptiontime: 44320 s
[2025-10-10 12:04:31] 2025-10-10 16:03:59,384 | INFO     | nevents: 400
[2025-10-10 12:04:31] 2025-10-10 16:03:59,384 | INFO     | neventsw: 0
[2025-10-10 12:04:31] 2025-10-10 16:03:59,384 | INFO     | pid: 21752
[2025-10-10 12:04:31] 2025-10-10 16:03:59,384 | INFO     | pgrp: 21752
[2025-10-10 12:04:31] 2025-10-10 16:03:59,385 | INFO     | corecount: 12
[2025-10-10 12:04:31] 2025-10-10 16:03:59,385 | INFO     | event service: False
[2025-10-10 12:04:31] 2025-10-10 16:03:59,385 | INFO     | sizes: {0: 2348630, 1: 2348885, 6: 2349147, 12: 2349175, 4112: 2375044, 4115: 2384042, 4117: 2384226, 4123: 2384420}
[2025-10-10 12:04:31] 2025-10-10 16:03:59,385 | INFO     | --------------------------------------------------
[2025-10-10 12:04:31] 2025-10-10 16:03:59,385 | INFO     | 
[2025-10-10 12:04:31] 2025-10-10 16:03:59,385 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 12:04:31] 2025-10-10 16:03:59,411 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,411 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,411 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,411 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,413 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,413 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,413 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,413 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,414 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,414 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,414 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 12:04:31] 2025-10-10 16:03:59,414 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,414 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 12:04:31] 2025-10-10 16:03:59,414 | INFO     | job 6837397533 has completed (purged errors)
[2025-10-10 12:04:31] 2025-10-10 16:03:59,415 | INFO     | overall cleanup function is called
[2025-10-10 12:04:31] 2025-10-10 16:04:00,422 | INFO     | --- collectZombieJob: --- 10, [21752]
[2025-10-10 12:04:31] 2025-10-10 16:04:00,423 | INFO     | zombie collector waiting for pid 21752
[2025-10-10 12:04:31] 2025-10-10 16:04:00,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 12:04:31] 2025-10-10 16:04:00,423 | INFO     | collected zombie processes
[2025-10-10 12:04:31] 2025-10-10 16:04:00,423 | INFO     | will attempt to kill all subprocesses of pid=21752
[2025-10-10 12:04:31] 2025-10-10 16:04:00,517 | INFO     | process IDs to be killed: [21752] (in reverse order)
[2025-10-10 12:04:31] 2025-10-10 16:04:00,568 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 12:04:31] 2025-10-10 16:04:00,569 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 12:04:31] 2025-10-10 16:04:00,572 | INFO     | did not find any defunct processes belonging to 21752
[2025-10-10 12:04:31] 2025-10-10 16:04:00,576 | INFO     | did not find any defunct processes belonging to 21752
[2025-10-10 12:04:31] 2025-10-10 16:04:00,576 | INFO     | ready for new job
[2025-10-10 12:04:31] 2025-10-10 16:04:00,576 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 12:04:31] 2025-10-10 16:04:00,577 | INFO     | ***************************************
[2025-10-10 12:04:31] 2025-10-10 16:04:00,578 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 12:04:31] 2025-10-10 16:04:00,578 | INFO     | ***************************************
[2025-10-10 12:04:31] 2025-10-10 16:04:00,578 | INFO     | 
[2025-10-10 12:04:31] 2025-10-10 16:04:00,579 | INFO     | architecture information:
[2025-10-10 12:04:31] 2025-10-10 16:04:00,579 | INFO     | executing command: cat /etc/os-release
[2025-10-10 12:04:31] 2025-10-10 16:04:00,593 | INFO     | cat /etc/os-release:
[2025-10-10 12:04:31] NAME="CentOS Linux"
[2025-10-10 12:04:31] VERSION="7 (Core)"
[2025-10-10 12:04:31] ID="centos"
[2025-10-10 12:04:31] ID_LIKE="rhel fedora"
[2025-10-10 12:04:31] VERSION_ID="7"
[2025-10-10 12:04:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 12:04:31] ANSI_COLOR="0;31"
[2025-10-10 12:04:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 12:04:31] HOME_URL="https://www.centos.org/"
[2025-10-10 12:04:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 12:04:31] 
[2025-10-10 12:04:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 12:04:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 12:04:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 12:04:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 12:04:31] 
[2025-10-10 12:04:31] 2025-10-10 16:04:00,593 | INFO     | ***************************************
[2025-10-10 12:04:31] 2025-10-10 16:04:01,095 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 12:04:31] 2025-10-10 16:04:01,111 | INFO     | sufficient remaining disk space (29372710912 B)
[2025-10-10 12:04:31] 2025-10-10 16:04:01,112 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 12:04:31] 2025-10-10 16:04:01,112 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 12:04:31] 2025-10-10 16:04:01,112 | INFO     | update_server=False
[2025-10-10 12:04:31] 2025-10-10 16:04:01,112 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 12:04:31] 2025-10-10 16:04:01,113 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 12:04:31] 2025-10-10 16:04:01,113 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:04:31] 2025-10-10 16:04:01,298 | INFO     | all data control threads have been joined
[2025-10-10 12:04:31] 2025-10-10 16:04:01,898 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:04:31] 2025-10-10 16:04:01,899 | INFO     | aborting loop
[2025-10-10 12:04:31] 2025-10-10 16:04:01,912 | INFO     | all payload control threads have been joined
[2025-10-10 12:04:31] 2025-10-10 16:04:02,085 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 12:04:31] 2025-10-10 16:04:02,118 | INFO     | [job] retrieve thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:02,119 | INFO     | [job] queue monitor thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:02,180 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:02,266 | INFO     | [payload] failed_post thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:02,303 | INFO     | [data] control thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:02,818 | INFO     | all job control threads have been joined
[2025-10-10 12:04:31] 2025-10-10 16:04:02,904 | INFO     | [job] job monitor thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:02,916 | INFO     | [payload] control thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:03,079 | INFO     | [payload] validate_post thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:03,196 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:03,197 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:03,197 | INFO     | [job] validate thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:03,406 | INFO     | [data] copytool_in thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:03,823 | INFO     | [job] control thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:04,090 | INFO     | [data] copytool_out thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:05,119 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:07,170 | INFO     | [monitor] cgroup control has ended
[2025-10-10 12:04:31] 2025-10-10 16:04:11,330 | INFO     | job.realtimelogging is not enabled
[2025-10-10 12:04:31] 2025-10-10 16:04:12,335 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 12:04:31] 2025-10-10 16:04:12,979 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299303683904)>', '<ExcThread(monitor, started 140298059511552)>']
[2025-10-10 12:04:31] 2025-10-10 16:04:17,987 | INFO     | all workflow threads have been joined
[2025-10-10 12:04:31] 2025-10-10 16:04:17,987 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 12:04:31] 2025-10-10 16:04:17,988 | INFO     | traces error code: 0
[2025-10-10 12:04:31] 2025-10-10 16:04:17,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 12:04:31] 2025-10-10 16:04:31,333 | INFO     | PID=15264 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 12:04:31] 2025-10-10 16:04:31,333 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 12:04:31] 2025-10-10 16:04:31,334 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 12:04:31] 2025-10-10 16:04:31,334 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 12:04:31] 2025-10-10 16:04:31,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 12:04:31] 2025-10-10 16:04:31,334 | CRITICAL | thread 'MainThread' is not alive
[2025-10-10 12:04:31] 2025-10-10 16:04:31,334 | INFO     | [monitor] control thread has ended
[2025-10-10 12:04:31] 2025-10-10 16:04:31,419 [wrapper] ==== pilot stdout END ====
[2025-10-10 12:04:31] 2025-10-10 16:04:31,423 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 12:04:31] 2025-10-10 16:04:31,427 [wrapper] pilotpid: 15264
[2025-10-10 12:04:31] 2025-10-10 16:04:31,431 [wrapper] Pilot exit status: 0
[2025-10-10 12:04:31] 2025-10-10 16:04:31,446 [wrapper] pandaids: 6837397533
[2025-10-10 12:04:31] 2025-10-10 16:04:31,490 [wrapper] cleanup supervisor_pilot  3166 15265
[2025-10-10 12:04:31] 2025-10-10 16:04:31,493 [wrapper] Test setup, not cleaning
[2025-10-10 12:04:31] 2025-10-10 16:04:31,497 [wrapper] apfmon messages muted
[2025-10-10 12:04:31] 2025-10-10 16:04:31,501 [wrapper] ==== wrapper stdout END ====
[2025-10-10 12:04:31] 2025-10-10 16:04:31,505 [wrapper] ==== wrapper stderr END ====
[2025-10-10 12:04:31]  *** Error codes and diagnostics ***
[2025-10-10 12:04:31]     "exeErrorCode": 0,
[2025-10-10 12:04:31]     "exeErrorDiag": "",
[2025-10-10 12:04:31]     "pilotErrorCode": 0,
[2025-10-10 12:04:31]     "pilotErrorDiag": "",
[2025-10-10 12:04:31]  *** Listing of results directory ***
[2025-10-10 12:04:31] total 404656
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 22:20 pilot3.tar.gz
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 22:28 queuedata.json
[2025-10-10 12:04:31] -rwx------ 1 boincer umatlas     36292 Oct  9 22:28 runpilot2-wrapper.sh
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas       100 Oct 10 10:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 12:04:31] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 10:54 run_atlas
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas       105 Oct 10 10:54 job.xml
[2025-10-10 12:04:31] -rw-r--r-- 2 boincer umatlas 219576157 Oct 10 10:54 EVNT.46676267._001248.pool.root.1
[2025-10-10 12:04:31] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 10:54 start_atlas.sh
[2025-10-10 12:04:31] drwxrwx--x 2 boincer umatlas      4096 Oct 10 10:54 shared
[2025-10-10 12:04:31] -rw-r--r-- 2 boincer umatlas    569677 Oct 10 10:54 input.tar.gz
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas         0 Oct 10 10:54 boinc_lockfile
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas      2550 Oct 10 10:54 pandaJob.out
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas    975533 Oct 10 10:54 agis_schedconf.cvmfs.json
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas   1560580 Oct 10 10:54 agis_ddmendpoints.agis.ALL.json
[2025-10-10 12:04:31] drwx------ 5 boincer umatlas      4096 Oct 10 10:55 pilot3
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas      5953 Oct 10 12:01 init_data.xml
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas 188900047 Oct 10 12:03 HITS.46676269._030613.pool.root.1
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas       529 Oct 10 12:03 boinc_task_state.xml
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas      1050 Oct 10 12:03 memory_monitor_summary.json
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas    391805 Oct 10 12:03 log.46676269._030613.job.log.tgz.1
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas        95 Oct 10 12:03 pilot_heartbeat.json
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas      7856 Oct 10 12:03 heartbeat.json
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 12:04 boinc_mmap_file
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas        27 Oct 10 12:04 wrapper_checkpoint.txt
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas       815 Oct 10 12:04 pilotlog.txt
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas    604923 Oct 10 12:04 log.46676269._030613.job.log.1
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas       357 Oct 10 12:04 output.list
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas       620 Oct 10 12:04 runtime_log
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas   1013760 Oct 10 12:04 result.tar.gz
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas      8705 Oct 10 12:04 runtime_log.err
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas       659 Oct 10 12:04 Bo3LDm42HR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDml3bNDma6x36n.diag
[2025-10-10 12:04:31] -rw-r--r-- 1 boincer umatlas     21984 Oct 10 12:04 stderr.txt
[2025-10-10 12:04:31] HITS file was successfully produced:
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas 188900047 Oct 10 12:03 shared/HITS.pool.root.1
[2025-10-10 12:04:31]  *** Contents of shared directory: ***
[2025-10-10 12:04:31] total 400480
[2025-10-10 12:04:31] -rw-r--r-- 2 boincer umatlas 219576157 Oct 10 10:54 ATLAS.root_0
[2025-10-10 12:04:31] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 10:54 start_atlas.sh
[2025-10-10 12:04:31] -rw-r--r-- 2 boincer umatlas    569677 Oct 10 10:54 input.tar.gz
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas 188900047 Oct 10 12:03 HITS.pool.root.1
[2025-10-10 12:04:31] -rw------- 1 boincer umatlas   1013760 Oct 10 12:04 result.tar.gz
12:04:33 (11594): run_atlas exited; CPU time 44287.057469
12:04:33 (11594): called boinc_finish(0)

</stderr_txt>
]]>

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