Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:53:28 (15988): wrapper (7.7.26015): starting
10:53:28 (15988): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 10:53:28] Arguments: --nthreads 12
[2025-10-10 10:53:28] Threads: 12
[2025-10-10 10:53:28] Checking for CVMFS
[2025-10-10 10:53:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 10:53:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 10:53:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 10:53:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 10:53:29] 2.11.2.0 2987 220101 96400 151550 0 56 11787063 20275200 1 130560 1 105589318 99.984 13298311 12168 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 10:53:29] CVMFS is ok
[2025-10-10 10:53:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 10:53:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 10:53:29] Further information can be found at the LHC@home message board.
[2025-10-10 10:53:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 10:53:29] Checking for apptainer binary...
[2025-10-10 10:53:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 10:53:29] Running /usr/bin/apptainer --version
[2025-10-10 10:53:29] apptainer version 1.3.2-1.el7
[2025-10-10 10:53:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 10:53:30] c-205-19.aglt2.org
[2025-10-10 10:53:30] apptainer works
[2025-10-10 10:53:30] Set ATHENA_PROC_NUMBER=12
[2025-10-10 10:53:30] Set ATHENA_CORE_NUMBER=12
[2025-10-10 10:53:30] Starting ATLAS job with PandaID=6830912563
[2025-10-10 10:53:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 12:01:58]  *** The last 200 lines of the pilot log: ***
[2025-10-10 12:01:58]  replicas=None
[2025-10-10 12:01:58]  scope=mc23_13p6TeV
[2025-10-10 12:01:58]  status=None
[2025-10-10 12:01:58]  status_code=0
[2025-10-10 12:01:58]  storage_token=
[2025-10-10 12:01:58]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6830912563/log.46376905._076568.job.log.tgz.1
[2025-10-10 12:01:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/c8/log.46376905._076568.job.log.tgz.1
[2025-10-10 12:01:58]  workdir=None
[2025-10-10 12:01:58] ]
[2025-10-10 12:01:58] 2025-10-10 16:00:43,348 | INFO     | transferring file log.46376905._076568.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6830912563/log.46376905._076568.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 12:01:58] 2025-10-10 16:00:43,348 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6830912563/log.46376905._076568.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._076568.job
[2025-10-10 12:01:58] 2025-10-10 16:00:43,370 | INFO     | adding to output.list: log.46376905._076568.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/c8/log.46376905._076568.job.log.tg
[2025-10-10 12:01:58] 2025-10-10 16:00:43,371 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 12:01:58] 2025-10-10 16:00:43,372 | INFO     | summary of transferred files:
[2025-10-10 12:01:58] 2025-10-10 16:00:43,372 | INFO     |  -- lfn=log.46376905._076568.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 12:01:58] 2025-10-10 16:00:43,372 | INFO     | stage-out finished correctly
[2025-10-10 12:01:58] 2025-10-10 16:00:44,991 | INFO     | time since job start (4019s) is within the limit (172800.0s)
[2025-10-10 12:01:58] 2025-10-10 16:00:45,213 | INFO     | monitor loop #299: job 0:6830912563 is in state 'finished'
[2025-10-10 12:01:58] 2025-10-10 16:00:45,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:01:58] 2025-10-10 16:00:45,741 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 12:01:58] 2025-10-10 16:00:46,842 | INFO     | job 6830912563 has state=finished
[2025-10-10 12:01:58] 2025-10-10 16:00:46,842 | INFO     | preparing for final server update for job 6830912563 in state='finished'
[2025-10-10 12:01:58] 2025-10-10 16:00:46,843 | INFO     | this job has now completed (state=finished)
[2025-10-10 12:01:58] 2025-10-10 16:00:46,843 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 12:01:58] 2025-10-10 16:00:46,843 | INFO     | log transfer has been attempted: DONE
[2025-10-10 12:01:58] 2025-10-10 16:00:46,843 | INFO     | job 6830912563 has finished - writing final server update
[2025-10-10 12:01:58] 2025-10-10 16:00:46,844 | INFO     | total number of processed events: 400 (read)
[2025-10-10 12:01:58] 2025-10-10 16:00:46,844 | INFO     | executing command: lscpu
[2025-10-10 12:01:58] 2025-10-10 16:00:46,870 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 12:01:58] 2025-10-10 16:00:46,997 | INFO     | time since job start (4021s) is within the limit (172800.0s)
[2025-10-10 12:01:58] 2025-10-10 16:00:47,717 | INFO     | monitor loop #300: job 0:6830912563 is in state 'finished'
[2025-10-10 12:01:58] 2025-10-10 16:00:47,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:01:58] 2025-10-10 16:00:49,002 | INFO     | time since job start (4024s) is within the limit (172800.0s)
[2025-10-10 12:01:58] 2025-10-10 16:00:50,220 | INFO     | monitor loop #301: job 0:6830912563 is in state 'finished'
[2025-10-10 12:01:58] 2025-10-10 16:00:50,220 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 12:01:58] 2025-10-10 16:00:51,008 | INFO     | time since job start (4026s) is within the limit (172800.0s)
[2025-10-10 12:01:58] 2025-10-10 16:00:51,536 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-10 12:01:58] 2025-10-10 16:00:51,540 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-10 12:01:58] 2025-10-10 16:00:51,543 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6830912563/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 12:01:58] 2025-10-10 16:00:51,544 | INFO     | extracted standard info from prmon json
[2025-10-10 12:01:58] 2025-10-10 16:00:51,544 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 12:01:58] 2025-10-10 16:00:51,544 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 12:01:58] 2025-10-10 16:00:51,544 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 12:01:58] 2025-10-10 16:00:51,545 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 12:01:58] 2025-10-10 16:00:51,547 | INFO     | fitting pss+swap vs Time
[2025-10-10 12:01:58] 2025-10-10 16:00:51,547 | INFO     | sum of square deviations: 63666310.0
[2025-10-10 12:01:58] 2025-10-10 16:00:51,547 | INFO     | sum of deviations: -6238685696.000001
[2025-10-10 12:01:58] 2025-10-10 16:00:51,547 | INFO     | mean x: 1760110128.0
[2025-10-10 12:01:58] 2025-10-10 16:00:51,548 | INFO     | mean y: 2769069.8474576273
[2025-10-10 12:01:58] 2025-10-10 16:00:51,548 | INFO     | -- intersect: 172476623435.4975
[2025-10-10 12:01:58] 2025-10-10 16:00:51,548 | INFO     | intersect: 172476623435.4975
[2025-10-10 12:01:58] 2025-10-10 16:00:51,548 | INFO     | chi2: 0.05005306580579092
[2025-10-10 12:01:58] 2025-10-10 16:00:51,548 | INFO     | -- intersect: 172476623435.4975
[2025-10-10 12:01:58] 2025-10-10 16:00:51,548 | INFO     | current memory leak: -97.99 B/s (using 59 data points, chi2=0.05)
[2025-10-10 12:01:58] 2025-10-10 16:00:51,549 | INFO     | could have reported an average CPU frequency of 2063 MHz (6 samples)
[2025-10-10 12:01:58] 2025-10-10 16:00:51,549 | INFO     | ..............................
[2025-10-10 12:01:58] 2025-10-10 16:00:51,549 | INFO     | . Timing measurements:
[2025-10-10 12:01:58] 2025-10-10 16:00:51,549 | INFO     | . get job = 0 s
[2025-10-10 12:01:58] 2025-10-10 16:00:51,549 | INFO     | . initial setup = 2 s
[2025-10-10 12:01:58] 2025-10-10 16:00:51,549 | INFO     | . payload setup = 7 s
[2025-10-10 12:01:58] 2025-10-10 16:00:51,549 | INFO     | . stage-in = 0 s
[2025-10-10 12:01:58] 2025-10-10 16:00:51,549 | INFO     | . payload execution = 3989 s
[2025-10-10 12:01:58] 2025-10-10 16:00:51,549 | INFO     | . stage-out = 0 s
[2025-10-10 12:01:58] 2025-10-10 16:00:51,550 | INFO     | . log creation = 0 s
[2025-10-10 12:01:58] 2025-10-10 16:00:51,550 | INFO     | ..............................
[2025-10-10 12:01:58] 2025-10-10 16:00:51,678 | INFO     | 
[2025-10-10 12:01:58] 2025-10-10 16:00:51,678 | INFO     | job summary report
[2025-10-10 12:01:58] 2025-10-10 16:00:51,679 | INFO     | --------------------------------------------------
[2025-10-10 12:01:58] 2025-10-10 16:00:51,679 | INFO     | PanDA job id: 6830912563
[2025-10-10 12:01:58] 2025-10-10 16:00:51,679 | INFO     | task id: 46376905
[2025-10-10 12:01:58] 2025-10-10 16:00:51,679 | INFO     | errors: (none)
[2025-10-10 12:01:58] 2025-10-10 16:00:51,679 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 12:01:58] 2025-10-10 16:00:51,679 | INFO     | pilot state: finished 
[2025-10-10 12:01:58] 2025-10-10 16:00:51,680 | INFO     | transexitcode: 0
[2025-10-10 12:01:58] 2025-10-10 16:00:51,680 | INFO     | exeerrorcode: 0
[2025-10-10 12:01:58] 2025-10-10 16:00:51,680 | INFO     | exeerrordiag: 
[2025-10-10 12:01:58] 2025-10-10 16:00:51,680 | INFO     | exitcode: 0
[2025-10-10 12:01:58] 2025-10-10 16:00:51,680 | INFO     | exitmsg: OK
[2025-10-10 12:01:58] 2025-10-10 16:00:51,680 | INFO     | cpuconsumptiontime: 42848 s
[2025-10-10 12:01:58] 2025-10-10 16:00:51,680 | INFO     | nevents: 400
[2025-10-10 12:01:58] 2025-10-10 16:00:51,681 | INFO     | neventsw: 0
[2025-10-10 12:01:58] 2025-10-10 16:00:51,681 | INFO     | pid: 26089
[2025-10-10 12:01:58] 2025-10-10 16:00:51,681 | INFO     | pgrp: 26089
[2025-10-10 12:01:58] 2025-10-10 16:00:51,681 | INFO     | corecount: 12
[2025-10-10 12:01:58] 2025-10-10 16:00:51,681 | INFO     | event service: False
[2025-10-10 12:01:58] 2025-10-10 16:00:51,681 | INFO     | sizes: {0: 2348816, 5: 2349078, 11: 2349134, 4000: 2374943, 4001: 2374942, 4002: 2383996, 4004: 2384180, 4010: 2384374}
[2025-10-10 12:01:58] 2025-10-10 16:00:51,682 | INFO     | --------------------------------------------------
[2025-10-10 12:01:58] 2025-10-10 16:00:51,682 | INFO     | 
[2025-10-10 12:01:58] 2025-10-10 16:00:51,682 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 12:01:58] 2025-10-10 16:00:51,705 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,705 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,706 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,706 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,706 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,707 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,707 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,707 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,707 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,707 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,707 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,708 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,708 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,708 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,708 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 12:01:58] 2025-10-10 16:00:51,708 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,708 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 12:01:58] 2025-10-10 16:00:51,709 | INFO     | job 6830912563 has completed (purged errors)
[2025-10-10 12:01:58] 2025-10-10 16:00:51,709 | INFO     | overall cleanup function is called
[2025-10-10 12:01:58] 2025-10-10 16:00:52,717 | INFO     | --- collectZombieJob: --- 10, [26089]
[2025-10-10 12:01:58] 2025-10-10 16:00:52,717 | INFO     | zombie collector waiting for pid 26089
[2025-10-10 12:01:58] 2025-10-10 16:00:52,717 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 12:01:58] 2025-10-10 16:00:52,717 | INFO     | collected zombie processes
[2025-10-10 12:01:58] 2025-10-10 16:00:52,717 | INFO     | will attempt to kill all subprocesses of pid=26089
[2025-10-10 12:01:58] 2025-10-10 16:00:52,817 | INFO     | process IDs to be killed: [26089] (in reverse order)
[2025-10-10 12:01:58] 2025-10-10 16:00:52,872 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 12:01:58] 2025-10-10 16:00:52,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 12:01:58] 2025-10-10 16:00:52,875 | INFO     | did not find any defunct processes belonging to 26089
[2025-10-10 12:01:58] 2025-10-10 16:00:52,878 | INFO     | did not find any defunct processes belonging to 26089
[2025-10-10 12:01:58] 2025-10-10 16:00:52,878 | INFO     | ready for new job
[2025-10-10 12:01:58] 2025-10-10 16:00:52,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 12:01:58] 2025-10-10 16:00:52,879 | INFO     | ***************************************
[2025-10-10 12:01:58] 2025-10-10 16:00:52,880 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-10 12:01:58] 2025-10-10 16:00:52,880 | INFO     | ***************************************
[2025-10-10 12:01:58] 2025-10-10 16:00:52,880 | INFO     | 
[2025-10-10 12:01:58] 2025-10-10 16:00:52,880 | INFO     | architecture information:
[2025-10-10 12:01:58] 2025-10-10 16:00:52,881 | INFO     | executing command: cat /etc/os-release
[2025-10-10 12:01:58] 2025-10-10 16:00:52,895 | INFO     | cat /etc/os-release:
[2025-10-10 12:01:58] NAME="CentOS Linux"
[2025-10-10 12:01:58] VERSION="7 (Core)"
[2025-10-10 12:01:58] ID="centos"
[2025-10-10 12:01:58] ID_LIKE="rhel fedora"
[2025-10-10 12:01:58] VERSION_ID="7"
[2025-10-10 12:01:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 12:01:58] ANSI_COLOR="0;31"
[2025-10-10 12:01:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 12:01:58] HOME_URL="https://www.centos.org/"
[2025-10-10 12:01:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 12:01:58] 
[2025-10-10 12:01:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 12:01:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 12:01:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 12:01:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 12:01:58] 
[2025-10-10 12:01:58] 2025-10-10 16:00:52,895 | INFO     | ***************************************
[2025-10-10 12:01:58] 2025-10-10 16:00:53,398 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 12:01:58] 2025-10-10 16:00:53,416 | INFO     | sufficient remaining disk space (29396828160 B)
[2025-10-10 12:01:58] 2025-10-10 16:00:53,416 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 12:01:58] 2025-10-10 16:00:53,417 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 12:01:58] 2025-10-10 16:00:53,417 | INFO     | update_server=False
[2025-10-10 12:01:58] 2025-10-10 16:00:53,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 12:01:58] 2025-10-10 16:00:53,417 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:01:58] 2025-10-10 16:00:53,648 | INFO     | all data control threads have been joined
[2025-10-10 12:01:58] 2025-10-10 16:00:53,728 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:01:58] 2025-10-10 16:00:53,729 | INFO     | aborting loop
[2025-10-10 12:01:58] 2025-10-10 16:00:53,753 | INFO     | all job control threads have been joined
[2025-10-10 12:01:58] 2025-10-10 16:00:53,968 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 12:01:58] 2025-10-10 16:00:54,420 | INFO     | [job] queue monitor thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:54,421 | INFO     | [job] retrieve thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:54,443 | INFO     | all payload control threads have been joined
[2025-10-10 12:01:58] 2025-10-10 16:00:54,456 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:54,635 | INFO     | [payload] validate_post thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:54,654 | INFO     | [data] control thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:54,734 | INFO     | [job] job monitor thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:54,758 | INFO     | [job] control thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:54,811 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:54,937 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:54,958 | INFO     | [data] copytool_in thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:55,449 | INFO     | [payload] control thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:55,662 | INFO     | [payload] failed_post thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:55,819 | INFO     | [job] validate thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:55,973 | INFO     | [data] copytool_out thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:00:56,329 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 12:01:58] 2025-10-10 16:01:00,335 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:01:03,570 | INFO     | job.realtimelogging is not enabled
[2025-10-10 12:01:58] 2025-10-10 16:01:04,575 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 12:01:58] 2025-10-10 16:01:24,206 | INFO     | PID=19663 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 12:01:58] 2025-10-10 16:01:24,206 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 12:01:58] 2025-10-10 16:01:24,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 12:01:58] 2025-10-10 16:01:24,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 12:01:58] 2025-10-10 16:01:51,459 | INFO     | [monitor] cgroup control has ended
[2025-10-10 12:01:58] 2025-10-10 16:01:53,434 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139670741722944)>', '<ExcThread(monitor, started 139670155409152)>']
[2025-10-10 12:01:58] 2025-10-10 16:01:54,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 12:01:58] 2025-10-10 16:01:54,350 | INFO     | [monitor] control thread has ended
[2025-10-10 12:01:58] 2025-10-10 16:01:58,459 | INFO     | all workflow threads have been joined
[2025-10-10 12:01:58] 2025-10-10 16:01:58,459 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 12:01:58] 2025-10-10 16:01:58,460 | INFO     | traces error code: 0
[2025-10-10 12:01:58] 2025-10-10 16:01:58,460 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 12:01:58] 2025-10-10 16:01:58,539 [wrapper] ==== pilot stdout END ====
[2025-10-10 12:01:58] 2025-10-10 16:01:58,543 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 12:01:58] 2025-10-10 16:01:58,547 [wrapper] pilotpid: 19663
[2025-10-10 12:01:58] 2025-10-10 16:01:58,551 [wrapper] Pilot exit status: 0
[2025-10-10 12:01:58] 2025-10-10 16:01:58,568 [wrapper] pandaids: 6830912563
[2025-10-10 12:01:58] 2025-10-10 16:01:58,618 [wrapper] cleanup supervisor_pilot  1622 19664
[2025-10-10 12:01:58] 2025-10-10 16:01:58,622 [wrapper] Test setup, not cleaning
[2025-10-10 12:01:58] 2025-10-10 16:01:58,626 [wrapper] apfmon messages muted
[2025-10-10 12:01:58] 2025-10-10 16:01:58,630 [wrapper] ==== wrapper stdout END ====
[2025-10-10 12:01:58] 2025-10-10 16:01:58,634 [wrapper] ==== wrapper stderr END ====
[2025-10-10 12:01:58]  *** Error codes and diagnostics ***
[2025-10-10 12:01:58]     "exeErrorCode": 0,
[2025-10-10 12:01:58]     "exeErrorDiag": "",
[2025-10-10 12:01:58]     "pilotErrorCode": 0,
[2025-10-10 12:01:58]     "pilotErrorDiag": "",
[2025-10-10 12:01:58]  *** Listing of results directory ***
[2025-10-10 12:01:58] total 391072
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas      5112 Oct  5 01:02 queuedata.json
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas    552446 Oct  5 01:08 pilot3.tar.gz
[2025-10-10 12:01:58] -rwx------ 1 boincer umatlas     36292 Oct  5 01:10 runpilot2-wrapper.sh
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas       100 Oct 10 10:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 12:01:58] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 10:53 run_atlas
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas       105 Oct 10 10:53 job.xml
[2025-10-10 12:01:58] -rw-r--r-- 2 boincer umatlas 212467222 Oct 10 10:53 EVNT.46376901._002796.pool.root.1
[2025-10-10 12:01:58] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 10:53 start_atlas.sh
[2025-10-10 12:01:58] drwxrwx--x 2 boincer umatlas      4096 Oct 10 10:53 shared
[2025-10-10 12:01:58] -rw-r--r-- 2 boincer umatlas    565610 Oct 10 10:53 input.tar.gz
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas         0 Oct 10 10:53 boinc_lockfile
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas      2519 Oct 10 10:53 pandaJob.out
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas    975533 Oct 10 10:53 agis_schedconf.cvmfs.json
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas   1560580 Oct 10 10:53 agis_ddmendpoints.agis.ALL.json
[2025-10-10 12:01:58] drwx------ 4 boincer umatlas      4096 Oct 10 10:53 pilot3
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas 182178366 Oct 10 12:00 HITS.46376905._076568.pool.root.1
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas       529 Oct 10 12:00 boinc_task_state.xml
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas        95 Oct 10 12:00 pilot_heartbeat.json
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas      1050 Oct 10 12:00 memory_monitor_summary.json
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas    374179 Oct 10 12:00 log.46376905._076568.job.log.tgz.1
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas      7855 Oct 10 12:00 heartbeat.json
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas      5952 Oct 10 12:01 init_data.xml
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 12:01 boinc_mmap_file
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas        27 Oct 10 12:01 wrapper_checkpoint.txt
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas      4818 Oct 10 12:01 pilotlog.txt
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas    586992 Oct 10 12:01 log.46376905._076568.job.log.1
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas       357 Oct 10 12:01 output.list
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas       620 Oct 10 12:01 runtime_log
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas    983040 Oct 10 12:01 result.tar.gz
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas      8705 Oct 10 12:01 runtime_log.err
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas       659 Oct 10 12:01 GN9NDmOCWP8n9Rq4apOajLDm4fhM0noT9bVof3QYDm2KFMDmUzj3Jm.diag
[2025-10-10 12:01:58] -rw-r--r-- 1 boincer umatlas     21834 Oct 10 12:01 stderr.txt
[2025-10-10 12:01:58] HITS file was successfully produced:
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas 182178366 Oct 10 12:00 shared/HITS.pool.root.1
[2025-10-10 12:01:58]  *** Contents of shared directory: ***
[2025-10-10 12:01:58] total 386932
[2025-10-10 12:01:58] -rw-r--r-- 2 boincer umatlas 212467222 Oct 10 10:53 ATLAS.root_0
[2025-10-10 12:01:58] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 10:53 start_atlas.sh
[2025-10-10 12:01:58] -rw-r--r-- 2 boincer umatlas    565610 Oct 10 10:53 input.tar.gz
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas 182178366 Oct 10 12:00 HITS.pool.root.1
[2025-10-10 12:01:58] -rw------- 1 boincer umatlas    983040 Oct 10 12:01 result.tar.gz
12:01:59 (15988): run_atlas exited; CPU time 42825.942561
12:01:59 (15988): called boinc_finish(0)

</stderr_txt>
]]>

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