Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
19:52:55 (2531539): wrapper (7.7.26015): starting
19:52:55 (2531539): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 19:52:55] Arguments: --nthreads 12
[2025-10-12 19:52:55] Threads: 12
[2025-10-12 19:52:55] Checking for CVMFS
[2025-10-12 19:52:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:52:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:52:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:52:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:52:56] 2.13.2.0 13441 13286 59760 151613 2 57 5687063 6144001 0 130560 0 11719904 99.992 408590 59 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-12 19:52:56] CVMFS is ok
[2025-10-12 19:52:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:52:56] Checking for apptainer binary...
[2025-10-12 19:52:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:52:56] Running /usr/bin/apptainer --version
[2025-10-12 19:52:56] apptainer version 1.4.3
[2025-10-12 19:52:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:52:56] MINIPC-PN51-E1
[2025-10-12 19:52:56] apptainer works
[2025-10-12 19:52:56] Set ATHENA_PROC_NUMBER=12
[2025-10-12 19:52:56] Set ATHENA_CORE_NUMBER=12
[2025-10-12 19:52:56] Starting ATLAS job with PandaID=6837400721
[2025-10-12 19:52:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:06:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:06:42] 2025-10-12 10:05:51,503 | INFO     | stage-out finished correctly
[2025-10-12 21:06:42] 2025-10-12 10:05:52,431 | INFO     | monitor loop #325: job 0:6837400721 is in state 'finished'
[2025-10-12 21:06:42] 2025-10-12 10:05:52,431 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:06:42] 2025-10-12 10:05:53,217 | INFO     | time since job start (4366s) is within the limit (172800.0s)
[2025-10-12 21:06:42] 2025-10-12 10:05:54,012 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:06:42] 2025-10-12 10:05:54,935 | INFO     | monitor loop #326: job 0:6837400721 is in state 'finished'
[2025-10-12 21:06:42] 2025-10-12 10:05:54,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:06:42] 2025-10-12 10:05:55,222 | INFO     | time since job start (4368s) is within the limit (172800.0s)
[2025-10-12 21:06:42] 2025-10-12 10:05:56,533 | INFO     | job 6837400721 has state=finished
[2025-10-12 21:06:42] 2025-10-12 10:05:56,533 | INFO     | preparing for final server update for job 6837400721 in state='finished'
[2025-10-12 21:06:42] 2025-10-12 10:05:57,227 | INFO     | time since job start (4370s) is within the limit (172800.0s)
[2025-10-12 21:06:42] 2025-10-12 10:05:57,439 | INFO     | monitor loop #327: job 0:6837400721 is in state 'finished'
[2025-10-12 21:06:42] 2025-10-12 10:05:57,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:06:42] 2025-10-12 10:05:57,738 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 21:06:42] 2025-10-12 10:05:57,738 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:06:42] 2025-10-12 10:05:57,738 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:06:42] 2025-10-12 10:05:57,738 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:06:42] 2025-10-12 10:05:57,738 | INFO     | job 6837400721 has finished - writing final server update
[2025-10-12 21:06:42] 2025-10-12 10:05:57,738 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:06:42] 2025-10-12 10:05:57,739 | INFO     | executing command: lscpu
[2025-10-12 21:06:42] 2025-10-12 10:05:57,760 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:06:42] 2025-10-12 10:05:59,232 | INFO     | time since job start (4372s) is within the limit (172800.0s)
[2025-10-12 21:06:42] 2025-10-12 10:05:59,943 | INFO     | monitor loop #328: job 0:6837400721 is in state 'finished'
[2025-10-12 21:06:42] 2025-10-12 10:05:59,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:06:42] 2025-10-12 10:06:01,238 | INFO     | time since job start (4374s) is within the limit (172800.0s)
[2025-10-12 21:06:42] 2025-10-12 10:06:02,447 | INFO     | monitor loop #329: job 0:6837400721 is in state 'finished'
[2025-10-12 21:06:42] 2025-10-12 10:06:02,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:06:42] 2025-10-12 10:06:03,243 | INFO     | time since job start (4376s) is within the limit (172800.0s)
[2025-10-12 21:06:42] 2025-10-12 10:06:04,950 | INFO     | monitor loop #330: job 0:6837400721 is in state 'finished'
[2025-10-12 21:06:42] 2025-10-12 10:06:04,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:06:42] 2025-10-12 10:06:05,249 | INFO     | time since job start (4378s) is within the limit (172800.0s)
[2025-10-12 21:06:42] 2025-10-12 10:06:07,255 | INFO     | time since job start (4380s) is within the limit (172800.0s)
[2025-10-12 21:06:42] 2025-10-12 10:06:07,453 | INFO     | monitor loop #331: job 0:6837400721 is in state 'finished'
[2025-10-12 21:06:42] 2025-10-12 10:06:07,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:06:42] 2025-10-12 10:06:09,260 | INFO     | time since job start (4382s) is within the limit (172800.0s)
[2025-10-12 21:06:42] 2025-10-12 10:06:09,956 | INFO     | monitor loop #332: job 0:6837400721 is in state 'finished'
[2025-10-12 21:06:42] 2025-10-12 10:06:09,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:06:42] 2025-10-12 10:06:10,737 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:06:42] 2025-10-12 10:06:10,739 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3285.975625
[2025-10-12 21:06:42] 2025-10-12 10:06:10,741 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6837400721/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:06:42] 2025-10-12 10:06:10,741 | INFO     | extracted standard info from prmon json
[2025-10-12 21:06:42] 2025-10-12 10:06:10,741 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:06:42] 2025-10-12 10:06:10,741 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:06:42] 2025-10-12 10:06:10,742 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:06:42] 2025-10-12 10:06:10,742 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | sum of deviations: -9934356483.000002
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | mean x: 1760261469.0
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | mean y: 2860243.8307692306
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | -- intersect: 205403235457.07962
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | intersect: 205403235457.07962
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | chi2: 0.12491756269264659
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | -- intersect: 205403235457.07962
[2025-10-12 21:06:42] 2025-10-12 10:06:10,743 | INFO     | current memory leak: -116.69 B/s (using 65 data points, chi2=0.12)
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | could have reported an average CPU frequency of 2726 MHz (6 samples)
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | ..............................
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | . Timing measurements:
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | . get job = 0 s
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | . initial setup = 5 s
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | . payload setup = 5 s
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | . stage-in = 0 s
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | . payload execution = 4338 s
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | . stage-out = 0 s
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | . log creation = 0 s
[2025-10-12 21:06:42] 2025-10-12 10:06:10,744 | INFO     | ..............................
[2025-10-12 21:06:42] 2025-10-12 10:06:10,797 | INFO     | 
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | job summary report
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | --------------------------------------------------
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | PanDA job id: 6837400721
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | task id: 46676269
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | errors: (none)
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | pilot state: finished 
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | transexitcode: 0
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | exeerrorcode: 0
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | exeerrordiag: 
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | exitcode: 0
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | exitmsg: OK
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | cpuconsumptiontime: 46438 s
[2025-10-12 21:06:42] 2025-10-12 10:06:10,798 | INFO     | nevents: 400
[2025-10-12 21:06:42] 2025-10-12 10:06:10,799 | INFO     | neventsw: 0
[2025-10-12 21:06:42] 2025-10-12 10:06:10,799 | INFO     | pid: 2542249
[2025-10-12 21:06:42] 2025-10-12 10:06:10,799 | INFO     | pgrp: 2542249
[2025-10-12 21:06:42] 2025-10-12 10:06:10,799 | INFO     | corecount: 12
[2025-10-12 21:06:42] 2025-10-12 10:06:10,799 | INFO     | event service: False
[2025-10-12 21:06:42] 2025-10-12 10:06:10,799 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 4347: 2375309, 4349: 2384307, 4351: 2384363, 4368: 2384685}
[2025-10-12 21:06:42] 2025-10-12 10:06:10,799 | INFO     | --------------------------------------------------
[2025-10-12 21:06:42] 2025-10-12 10:06:10,799 | INFO     | 
[2025-10-12 21:06:42] 2025-10-12 10:06:10,799 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-12 21:06:42] 2025-10-12 10:06:10,818 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,818 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,818 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,818 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,818 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,818 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,818 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | job 6837400721 has completed (purged errors)
[2025-10-12 21:06:42] 2025-10-12 10:06:10,819 | INFO     | overall cleanup function is called
[2025-10-12 21:06:42] 2025-10-12 10:06:11,827 | INFO     | --- collectZombieJob: --- 10, [2542249]
[2025-10-12 21:06:42] 2025-10-12 10:06:11,827 | INFO     | zombie collector waiting for pid 2542249
[2025-10-12 21:06:42] 2025-10-12 10:06:11,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:06:42] 2025-10-12 10:06:11,827 | INFO     | collected zombie processes
[2025-10-12 21:06:42] 2025-10-12 10:06:11,827 | INFO     | will attempt to kill all subprocesses of pid=2542249
[2025-10-12 21:06:42] 2025-10-12 10:06:11,909 | INFO     | process IDs to be killed: [2542249] (in reverse order)
[2025-10-12 21:06:42] 2025-10-12 10:06:11,962 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:06:42] 2025-10-12 10:06:11,962 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:06:42] 2025-10-12 10:06:11,966 | INFO     | did not find any defunct processes belonging to 2542249
[2025-10-12 21:06:42] 2025-10-12 10:06:11,969 | INFO     | did not find any defunct processes belonging to 2542249
[2025-10-12 21:06:42] 2025-10-12 10:06:11,970 | INFO     | ready for new job
[2025-10-12 21:06:42] 2025-10-12 10:06:11,970 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:06:42] 2025-10-12 10:06:11,971 | INFO     | ***************************************
[2025-10-12 21:06:42] 2025-10-12 10:06:11,971 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:06:42] 2025-10-12 10:06:11,971 | INFO     | ***************************************
[2025-10-12 21:06:42] 2025-10-12 10:06:11,971 | INFO     | 
[2025-10-12 21:06:42] 2025-10-12 10:06:11,972 | INFO     | architecture information:
[2025-10-12 21:06:42] 2025-10-12 10:06:11,973 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:06:42] 2025-10-12 10:06:11,990 | INFO     | cat /etc/os-release:
[2025-10-12 21:06:42] NAME="CentOS Linux"
[2025-10-12 21:06:42] VERSION="7 (Core)"
[2025-10-12 21:06:42] ID="centos"
[2025-10-12 21:06:42] ID_LIKE="rhel fedora"
[2025-10-12 21:06:42] VERSION_ID="7"
[2025-10-12 21:06:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:06:42] ANSI_COLOR="0;31"
[2025-10-12 21:06:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:06:42] HOME_URL="https://www.centos.org/"
[2025-10-12 21:06:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:06:42] 
[2025-10-12 21:06:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:06:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:06:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:06:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:06:42] 
[2025-10-12 21:06:42] 2025-10-12 10:06:11,990 | INFO     | ***************************************
[2025-10-12 21:06:42] 2025-10-12 10:06:12,493 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 21:06:42] 2025-10-12 10:06:12,520 | INFO     | sufficient remaining disk space (405603876864 B)
[2025-10-12 21:06:42] 2025-10-12 10:06:12,520 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:06:42] 2025-10-12 10:06:12,520 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:06:42] 2025-10-12 10:06:12,521 | INFO     | update_server=False
[2025-10-12 21:06:42] 2025-10-12 10:06:12,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:06:42] 2025-10-12 10:06:12,521 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:06:42] 2025-10-12 10:06:12,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:06:42] 2025-10-12 10:06:12,742 | INFO     | all job control threads have been joined
[2025-10-12 21:06:42] 2025-10-12 10:06:13,034 | INFO     | all data control threads have been joined
[2025-10-12 21:06:42] 2025-10-12 10:06:13,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:06:42] 2025-10-12 10:06:13,465 | INFO     | aborting loop
[2025-10-12 21:06:42] 2025-10-12 10:06:13,526 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:13,526 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:13,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:06:42] 2025-10-12 10:06:13,628 | INFO     | all payload control threads have been joined
[2025-10-12 21:06:42] 2025-10-12 10:06:13,690 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:13,747 | INFO     | [job] control thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:13,907 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:13,967 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:06:42] 2025-10-12 10:06:14,040 | INFO     | [data] control thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:14,470 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:14,526 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:14,621 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:14,630 | INFO     | [payload] control thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:14,669 | INFO     | [job] validate thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:14,679 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:14,745 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:14,778 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:14,786 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:17,574 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:06:42] 2025-10-12 10:06:18,961 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130286740473664)>', '<ExcThread(monitor, started 130285786085120)>']
[2025-10-12 21:06:42] 2025-10-12 10:06:23,986 | INFO     | all workflow threads have been joined
[2025-10-12 21:06:42] 2025-10-12 10:06:23,986 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:06:42] 2025-10-12 10:06:23,987 | INFO     | traces error code: 0
[2025-10-12 21:06:42] 2025-10-12 10:06:23,987 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:06:42] 2025-10-12 10:06:42,461 | INFO     | PID=2535438 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:06:42] 2025-10-12 10:06:42,463 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:06:42] 2025-10-12 10:06:42,463 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:06:42] 2025-10-12 10:06:42,463 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:06:42] 2025-10-12 10:06:42,463 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:06:42] 2025-10-12 10:06:42,463 | INFO     | [monitor] control thread has ended
[2025-10-12 21:06:42] 2025-10-12 10:06:42,621 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:06:42] 2025-10-12 10:06:42,625 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:06:42] 2025-10-12 10:06:42,630 [wrapper] pilotpid: 2535438
[2025-10-12 21:06:42] 2025-10-12 10:06:42,633 [wrapper] Pilot exit status: 0
[2025-10-12 21:06:42] 2025-10-12 10:06:42,647 [wrapper] pandaids: 6837400721
[2025-10-12 21:06:42] 2025-10-12 10:06:42,680 [wrapper] cleanup supervisor_pilot 2601608 2535439
[2025-10-12 21:06:42] 2025-10-12 10:06:42,684 [wrapper] Test setup, not cleaning
[2025-10-12 21:06:42] 2025-10-12 10:06:42,689 [wrapper] apfmon messages muted
[2025-10-12 21:06:42] 2025-10-12 10:06:42,693 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:06:42] 2025-10-12 10:06:42,697 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:06:42]  *** Error codes and diagnostics ***
[2025-10-12 21:06:42]     "exeErrorCode": 0,
[2025-10-12 21:06:42]     "exeErrorDiag": "",
[2025-10-12 21:06:42]     "pilotErrorCode": 0,
[2025-10-12 21:06:42]     "pilotErrorDiag": "",
[2025-10-12 21:06:42]  *** Listing of results directory ***
[2025-10-12 21:06:42] total 409100
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc    557409 Oct 10 15:08 pilot3.tar.gz
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc      5112 Oct 10 15:09 queuedata.json
[2025-10-12 21:06:42] -rwx------ 1 boinc boinc     36292 Oct 10 15:10 runpilot2-wrapper.sh
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc       100 Oct 12 19:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:06:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 19:52 run_atlas
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc       105 Oct 12 19:52 job.xml
[2025-10-12 21:06:42] -rw-r--r-- 2 boinc boinc 220805521 Oct 12 19:52 EVNT.46676267._001303.pool.root.1
[2025-10-12 21:06:42] drwxrwx--x 2 boinc boinc      4096 Oct 12 19:52 shared
[2025-10-12 21:06:42] -rw-r--r-- 2 boinc boinc    569684 Oct 12 19:52 input.tar.gz
[2025-10-12 21:06:42] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:52 start_atlas.sh
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:52 boinc_setup_complete
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc      9348 Oct 12 19:52 init_data.xml
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:52 boinc_lockfile
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc      2550 Oct 12 19:52 pandaJob.out
[2025-10-12 21:06:42] -rw------- 1 boinc boinc    975520 Oct 12 19:53 agis_schedconf.cvmfs.json
[2025-10-12 21:06:42] -rw------- 1 boinc boinc   1560580 Oct 12 19:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:06:42] drwx------ 5 boinc boinc      4096 Oct 12 19:53 pilot3
[2025-10-12 21:06:42] -rw------- 1 boinc boinc 192160849 Oct 12 21:05 HITS.46676269._031978.pool.root.1
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc       529 Oct 12 21:05 boinc_task_state.xml
[2025-10-12 21:06:42] -rw------- 1 boinc boinc      1027 Oct 12 21:05 memory_monitor_summary.json
[2025-10-12 21:06:42] -rw------- 1 boinc boinc    382795 Oct 12 21:05 log.46676269._031978.job.log.tgz.1
[2025-10-12 21:06:42] -rw------- 1 boinc boinc      7792 Oct 12 21:06 heartbeat.json
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc      8192 Oct 12 21:06 boinc_mmap_file
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc        27 Oct 12 21:06 wrapper_checkpoint.txt
[2025-10-12 21:06:42] -rw------- 1 boinc boinc        95 Oct 12 21:06 pilot_heartbeat.json
[2025-10-12 21:06:42] -rw------- 1 boinc boinc       747 Oct 12 21:06 pilotlog.txt
[2025-10-12 21:06:42] -rw------- 1 boinc boinc    637469 Oct 12 21:06 log.46676269._031978.job.log.1
[2025-10-12 21:06:42] -rw------- 1 boinc boinc       357 Oct 12 21:06 output.list
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc       620 Oct 12 21:06 runtime_log
[2025-10-12 21:06:42] -rw------- 1 boinc boinc   1044480 Oct 12 21:06 result.tar.gz
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc      8703 Oct 12 21:06 runtime_log.err
[2025-10-12 21:06:42] -rw------- 1 boinc boinc       653 Oct 12 21:06 eiMLDmddJR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1HcNDm8xFdcm.diag
[2025-10-12 21:06:42] -rw-r--r-- 1 boinc boinc     21869 Oct 12 21:06 stderr.txt
[2025-10-12 21:06:42] HITS file was successfully produced:
[2025-10-12 21:06:42] -rw------- 1 boinc boinc 192160849 Oct 12 21:05 shared/HITS.pool.root.1
[2025-10-12 21:06:42]  *** Contents of shared directory: ***
[2025-10-12 21:06:42] total 404896
[2025-10-12 21:06:42] -rw-r--r-- 2 boinc boinc 220805521 Oct 12 19:52 ATLAS.root_0
[2025-10-12 21:06:42] -rw-r--r-- 2 boinc boinc    569684 Oct 12 19:52 input.tar.gz
[2025-10-12 21:06:42] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:52 start_atlas.sh
[2025-10-12 21:06:42] -rw------- 1 boinc boinc 192160849 Oct 12 21:05 HITS.pool.root.1
[2025-10-12 21:06:42] -rw------- 1 boinc boinc   1044480 Oct 12 21:06 result.tar.gz
21:06:44 (2531539): run_atlas exited; CPU time 46393.435029
21:06:44 (2531539): called boinc_finish(0)

</stderr_txt>
]]>

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