Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
17:49:15 (639932): wrapper (7.7.26015): starting
17:49:15 (639932): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 17:49:15] Arguments: --nthreads 12
[2025-10-10 17:49:15] Threads: 12
[2025-10-10 17:49:15] Checking for CVMFS
[2025-10-10 17:49:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 17:49:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 17:49:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 17:49:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 17:49:15] 2.13.2.0 2625769 1275 51916 151556 2 188 4040097 4096000 851 130560 0 6210217 99.998 45178 653 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 17:49:15] CVMFS is ok
[2025-10-10 17:49:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 17:49:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 17:49:15] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 17:49:15] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 17:49:15] Further information can be found at the LHC@home message board.
[2025-10-10 17:49:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 17:49:15] Checking for apptainer binary...
[2025-10-10 17:49:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 17:49:15] Running /usr/bin/apptainer --version
[2025-10-10 17:49:15] apptainer version 1.4.3
[2025-10-10 17:49:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 17:49:15] test-run
[2025-10-10 17:49:15] apptainer works
[2025-10-10 17:49:15] Set ATHENA_PROC_NUMBER=12
[2025-10-10 17:49:15] Set ATHENA_CORE_NUMBER=12
[2025-10-10 17:49:15] Starting ATLAS job with PandaID=6837555378
[2025-10-10 17:49:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 17:56:48]  *** The last 200 lines of the pilot log: ***
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | WARNING  | wrong length of table data, x=[1760118574.0, 1760118635.0, 1760118696.0, 1760118757.0], y=[200532.0, 445532.0, 445532.0, 445532.0] (must be same and length>=4)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | ..............................
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . Timing measurements:
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . get job = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . initial setup = 2 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . payload setup = 1 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . stage-in = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . payload execution = 235 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | . stage-out = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | . log creation = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | ..............................
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-6837555378/pilotlog.txt
[2025-10-10 17:56:48] 2025-10-10 17:56:16,361 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 17:56:48] - Log from pilotlog.txt -
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6837555378/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | extracted standard info from prmon json
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | WARNING  | wrong length of table data, x=[1760118574.0, 1760118635.0, 1760118696.0, 1760118757.0], y=[200532.0, 445532.0, 445532.0, 445532.0] (must be same and length>=4)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | ..............................
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . Timing measurements:
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . get job = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . initial setup = 2 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . payload setup = 1 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . stage-in = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . payload execution = 235 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | . stage-out = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | . log creation = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | ..............................
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-6837555378/pilotlog.txt
[2025-10-10 17:56:48] 2025-10-10 17:56:16,361 | WARNING  | 
[2025-10-10 17:56:48] [begin log extracts]
[2025-10-10 17:56:48] - Log from pilotlog.txt -
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6837555378/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | extracted standard info from prmon json
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | WARNING  | wrong length of table data, x=[1760118574.0, 1760118635.0, 1760118696.0, 1760118757.0], y=[200532.0, 445532.0, 445532.0, 445532.0] (must be same and length>=4)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | ..............................
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . Timing measurements:
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . get job = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . initial setup = 2 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . payload setup = 1 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . stage-in = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,358 | INFO     | . payload execution = 235 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | . stage-out = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | . log creation = 0 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | ..............................
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 17:56:48] 2025-10-10 17:56:16,359 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-6837555378/pilotlog.txt
[2025-10-10 17:56:48] [end log extracts]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,362 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,362 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | 
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | job summary report
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | --------------------------------------------------
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | PanDA job id: 6837555378
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | task id: 46676269
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 17:53:24,143 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | pilot state: failed 
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | transexitcode: 65
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | exeerrorcode: 65
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | exitcode: 65
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | cpuconsumptiontime: 4 s
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | nevents: 0
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | neventsw: 0
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | pid: 650429
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | pgrp: 650429
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | corecount: 12
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | event service: False
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | sizes: {0: 2348864, 1: 2349126, 11: 2349154, 239: 2373113, 240: 2377419, 242: 2377419, 405: 2377713}
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | --------------------------------------------------
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | 
[2025-10-10 17:56:48] 2025-10-10 17:56:16,380 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,386 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,386 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,386 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,386 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 17:56:48] 2025-10-10 17:56:16,386 | INFO     | job 6837555378 has completed (purged errors)
[2025-10-10 17:56:48] 2025-10-10 17:56:16,386 | INFO     | overall cleanup function is called
[2025-10-10 17:56:48] 2025-10-10 17:56:17,391 | INFO     | --- collectZombieJob: --- 10, [650429]
[2025-10-10 17:56:48] 2025-10-10 17:56:17,391 | INFO     | zombie collector waiting for pid 650429
[2025-10-10 17:56:48] 2025-10-10 17:56:17,391 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 17:56:48] 2025-10-10 17:56:17,391 | INFO     | collected zombie processes
[2025-10-10 17:56:48] 2025-10-10 17:56:17,391 | INFO     | will attempt to kill all subprocesses of pid=650429
[2025-10-10 17:56:48] 2025-10-10 17:56:17,404 | INFO     | process IDs to be killed: [650429] (in reverse order)
[2025-10-10 17:56:48] 2025-10-10 17:56:17,413 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 17:56:48] 2025-10-10 17:56:17,414 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 17:56:48] 2025-10-10 17:56:17,414 | INFO     | did not find any defunct processes belonging to 650429
[2025-10-10 17:56:48] 2025-10-10 17:56:17,414 | INFO     | did not find any defunct processes belonging to 650429
[2025-10-10 17:56:48] 2025-10-10 17:56:17,415 | INFO     | ready for new job
[2025-10-10 17:56:48] 2025-10-10 17:56:17,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 17:56:48] 2025-10-10 17:56:17,415 | INFO     | ***************************************
[2025-10-10 17:56:48] 2025-10-10 17:56:17,415 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 17:56:48] 2025-10-10 17:56:17,415 | INFO     | ***************************************
[2025-10-10 17:56:48] 2025-10-10 17:56:17,415 | INFO     | 
[2025-10-10 17:56:48] 2025-10-10 17:56:17,415 | INFO     | pilot is running in a VM
[2025-10-10 17:56:48] 2025-10-10 17:56:17,415 | INFO     | architecture information:
[2025-10-10 17:56:48] 2025-10-10 17:56:17,415 | INFO     | executing command: cat /etc/os-release
[2025-10-10 17:56:48] 2025-10-10 17:56:17,420 | INFO     | cat /etc/os-release:
[2025-10-10 17:56:48] NAME="CentOS Linux"
[2025-10-10 17:56:48] VERSION="7 (Core)"
[2025-10-10 17:56:48] ID="centos"
[2025-10-10 17:56:48] ID_LIKE="rhel fedora"
[2025-10-10 17:56:48] VERSION_ID="7"
[2025-10-10 17:56:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 17:56:48] ANSI_COLOR="0;31"
[2025-10-10 17:56:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 17:56:48] HOME_URL="https://www.centos.org/"
[2025-10-10 17:56:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 17:56:48] 
[2025-10-10 17:56:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 17:56:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 17:56:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 17:56:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 17:56:48] 
[2025-10-10 17:56:48] 2025-10-10 17:56:17,420 | INFO     | ***************************************
[2025-10-10 17:56:48] 2025-10-10 17:56:17,923 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-10 17:56:48] 2025-10-10 17:56:17,927 | INFO     | sufficient remaining disk space (23733469184 B)
[2025-10-10 17:56:48] 2025-10-10 17:56:17,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 17:56:48] 2025-10-10 17:56:17,927 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 17:56:48] 2025-10-10 17:56:17,927 | INFO     | update_server=False
[2025-10-10 17:56:48] 2025-10-10 17:56:17,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 17:56:48] 2025-10-10 17:56:17,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:56:48] 2025-10-10 17:56:17,928 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 17:56:48] 2025-10-10 17:56:17,928 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 17:56:48] 2025-10-10 17:56:17,988 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 17:56:48] 2025-10-10 17:56:17,988 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 17:56:48] 2025-10-10 17:56:17,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:56:48] 2025-10-10 17:56:17,988 | INFO     | will abort loop
[2025-10-10 17:56:48] 2025-10-10 17:56:18,742 | INFO     | all data control threads have been joined
[2025-10-10 17:56:48] 2025-10-10 17:56:18,933 | INFO     | [job] retrieve thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:18,933 | INFO     | [job] queue monitor thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:18,992 | INFO     | all job control threads have been joined
[2025-10-10 17:56:48] 2025-10-10 17:56:18,993 | INFO     | [job] job monitor thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:19,066 | INFO     | [payload] failed_post thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:19,206 | INFO     | all payload control threads have been joined
[2025-10-10 17:56:48] 2025-10-10 17:56:19,316 | INFO     | [data] copytool_in thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:19,666 | INFO     | [monitor] cgroup control has ended
[2025-10-10 17:56:48] 2025-10-10 17:56:19,747 | INFO     | [data] control thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:19,859 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:19,898 | INFO     | [job] validate thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:19,933 | INFO     | [data] copytool_out thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:19,976 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:19,997 | INFO     | [job] control thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:20,013 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:20,087 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:20,153 | INFO     | [payload] validate_post thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:20,211 | INFO     | [payload] control thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:21,933 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 17:56:48] 2025-10-10 17:56:21,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123183793649472)>', '<ExcThread(monitor, started 123183084599040)>']
[2025-10-10 17:56:48] 2025-10-10 17:56:27,010 | INFO     | all workflow threads have been joined
[2025-10-10 17:56:48] 2025-10-10 17:56:27,010 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 17:56:48] 2025-10-10 17:56:27,010 | INFO     | traces error code: 0
[2025-10-10 17:56:48] 2025-10-10 17:56:27,010 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 17:56:48] 2025-10-10 17:56:48,663 | INFO     | PID=643782 has CPU usage=0.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 17:56:48] 2025-10-10 17:56:48,663 | INFO     | .. there are 2 such processes running
[2025-10-10 17:56:48] 2025-10-10 17:56:48,664 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 17:56:48] 2025-10-10 17:56:48,664 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 17:56:48] 2025-10-10 17:56:48,664 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 17:56:48] 2025-10-10 17:56:48,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 17:56:48] 2025-10-10 17:56:48,664 | INFO     | [monitor] control thread has ended
[2025-10-10 17:56:48] 2025-10-10 17:56:48,689 [wrapper] ==== pilot stdout END ====
[2025-10-10 17:56:48] 2025-10-10 17:56:48,690 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 17:56:48] 2025-10-10 17:56:48,690 [wrapper] pilotpid: 643782
[2025-10-10 17:56:48] 2025-10-10 17:56:48,691 [wrapper] Pilot exit status: 0
[2025-10-10 17:56:48] 2025-10-10 17:56:48,693 [wrapper] pandaids: 6837555378
[2025-10-10 17:56:48] 2025-10-10 17:56:48,700 [wrapper] cleanup supervisor_pilot  643788 643783
[2025-10-10 17:56:48] 2025-10-10 17:56:48,700 [wrapper] Test setup, not cleaning
[2025-10-10 17:56:48] 2025-10-10 17:56:48,701 [wrapper] apfmon messages muted
[2025-10-10 17:56:48] 2025-10-10 17:56:48,701 [wrapper] ==== wrapper stdout END ====
[2025-10-10 17:56:48] 2025-10-10 17:56:48,702 [wrapper] ==== wrapper stderr END ====
[2025-10-10 17:56:48]  *** Error codes and diagnostics ***
[2025-10-10 17:56:48]     "exeErrorCode": 65,
[2025-10-10 17:56:48]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 17:56:48]     "pilotErrorCode": 1305,
[2025-10-10 17:56:48]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 17:56:48]  *** Listing of results directory ***
[2025-10-10 17:56:48] total 221424
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc    557409 Oct 10 09:06 pilot3.tar.gz
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc      5112 Oct 10 09:20 queuedata.json
[2025-10-10 17:56:48] -rwx------ 1 boinc boinc     36292 Oct 10 09:21 runpilot2-wrapper.sh
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc       100 Oct 10 17:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 17:56:48] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 17:49 run_atlas
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc       105 Oct 10 17:49 job.xml
[2025-10-10 17:56:48] -rw-r--r-- 2 boinc boinc     15120 Oct 10 17:49 start_atlas.sh
[2025-10-10 17:56:48] drwxrwx--x 2 boinc boinc      4096 Oct 10 17:49 shared
[2025-10-10 17:56:48] -rw-r--r-- 2 boinc boinc    569684 Oct 10 17:49 input.tar.gz
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc      6938 Oct 10 17:49 init_data.xml
[2025-10-10 17:56:48] -rw-r--r-- 2 boinc boinc 222554028 Oct 10 17:49 EVNT.46676267._001460.pool.root.1
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc         0 Oct 10 17:49 boinc_lockfile
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc      2550 Oct 10 17:49 pandaJob.out
[2025-10-10 17:56:48] -rw------- 1 boinc boinc    975525 Oct 10 17:49 agis_schedconf.cvmfs.json
[2025-10-10 17:56:48] -rw------- 1 boinc boinc   1560580 Oct 10 17:49 agis_ddmendpoints.agis.ALL.json
[2025-10-10 17:56:48] drwx------ 5 boinc boinc      4096 Oct 10 17:49 pilot3
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc       523 Oct 10 17:53 boinc_task_state.xml
[2025-10-10 17:56:48] -rw------- 1 boinc boinc       983 Oct 10 17:53 memory_monitor_summary.json
[2025-10-10 17:56:48] -rw------- 1 boinc boinc     23864 Oct 10 17:53 log.46676269._035926.job.log.tgz.1
[2025-10-10 17:56:48] -rw------- 1 boinc boinc      8440 Oct 10 17:56 heartbeat.json
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc      8192 Oct 10 17:56 boinc_mmap_file
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc        22 Oct 10 17:56 wrapper_checkpoint.txt
[2025-10-10 17:56:48] -rw------- 1 boinc boinc        95 Oct 10 17:56 pilot_heartbeat.json
[2025-10-10 17:56:48] -rw------- 1 boinc boinc       821 Oct 10 17:56 pilotlog.txt
[2025-10-10 17:56:48] -rw------- 1 boinc boinc    117550 Oct 10 17:56 log.46676269._035926.job.log.1
[2025-10-10 17:56:48] -rw------- 1 boinc boinc       188 Oct 10 17:56 output.list
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc       620 Oct 10 17:56 runtime_log
[2025-10-10 17:56:48] -rw------- 1 boinc boinc    163840 Oct 10 17:56 result.tar.gz
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc      8609 Oct 10 17:56 runtime_log.err
[2025-10-10 17:56:48] -rw------- 1 boinc boinc       626 Oct 10 17:56 lLhLDmaUOR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0ucNDmZ9dQim.diag
[2025-10-10 17:56:48] -rw-r--r-- 1 boinc boinc     22247 Oct 10 17:56 stderr.txt
[2025-10-10 17:56:48] No HITS result produced
[2025-10-10 17:56:48]  *** Contents of shared directory: ***
[2025-10-10 17:56:48] total 218080
[2025-10-10 17:56:48] -rw-r--r-- 2 boinc boinc     15120 Oct 10 17:49 start_atlas.sh
[2025-10-10 17:56:48] -rw-r--r-- 2 boinc boinc    569684 Oct 10 17:49 input.tar.gz
[2025-10-10 17:56:48] -rw-r--r-- 2 boinc boinc 222554028 Oct 10 17:49 ATLAS.root_0
[2025-10-10 17:56:48] -rw------- 1 boinc boinc    163840 Oct 10 17:56 result.tar.gz
17:56:50 (639932): run_atlas exited; CPU time 7.353557
17:56:50 (639932): called boinc_finish(0)

</stderr_txt>
]]>

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