Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:36:04 (28155): wrapper (7.7.26015): starting
10:36:04 (28155): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 10:36:04] Arguments: --nthreads 8
[2025-10-10 10:36:04] Threads: 8
[2025-10-10 10:36:04] Checking for CVMFS
[2025-10-10 10:36:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 10:36:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 10:36:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 10:36:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 10:36:04] 2.11.2.0 12825 50107 123468 151548 2 188 16321635 18432000 1824 130560 0 42423517 99.976 1839501 19454 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 10:36:04] CVMFS is ok
[2025-10-10 10:36:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 10:36:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 10:36:04] Further information can be found at the LHC@home message board.
[2025-10-10 10:36:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 10:36:04] Checking for apptainer binary...
[2025-10-10 10:36:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 10:36:04] Running /usr/bin/apptainer --version
[2025-10-10 10:36:04] apptainer version 1.3.2-1.el7
[2025-10-10 10:36:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 10:36:05] c-206-8.aglt2.org
[2025-10-10 10:36:05] apptainer works
[2025-10-10 10:36:05] Set ATHENA_PROC_NUMBER=8
[2025-10-10 10:36:05] Set ATHENA_CORE_NUMBER=8
[2025-10-10 10:36:05] Starting ATLAS job with PandaID=6837512371
[2025-10-10 10:36:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 10:43:22]  *** The last 200 lines of the pilot log: ***
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 10:43:22] 2025-10-10 14:42:39,203 | WARNING  | wrong length of table data, x=[1760106999.0, 1760107060.0, 1760107121.0, 1760107182.0], y=[17813.0, 926176.0, 928593.0, 929777.0] (must be same and length>=4)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,203 | INFO     | could have reported an average CPU frequency of 2024 MHz (4 samples)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,203 | INFO     | ..............................
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . Timing measurements:
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . get job = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . initial setup = 2 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . payload setup = 4 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . stage-in = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . payload execution = 238 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . stage-out = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . log creation = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | ..............................
[2025-10-10 10:43:22] 2025-10-10 14:42:39,205 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 10:43:22] 2025-10-10 14:42:39,205 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-6837512371/pilotlog.txt
[2025-10-10 10:43:22] 2025-10-10 14:42:39,219 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 10:43:22] - Log from pilotlog.txt -
[2025-10-10 10:43:22] 2025-10-10 14:42:39,201 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837512371/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | INFO     | extracted standard info from prmon json
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 10:43:22] 2025-10-10 14:42:39,203 | WARNING  | wrong length of table data, x=[1760106999.0, 1760107060.0, 1760107121.0, 1760107182.0], y=[17813.0, 926176.0, 928593.0, 929777.0] (must be same and length>=4)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,203 | INFO     | could have reported an average CPU frequency of 2024 MHz (4 samples)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,203 | INFO     | ..............................
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . Timing measurements:
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . get job = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . initial setup = 2 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . payload setup = 4 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . stage-in = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . payload execution = 238 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . stage-out = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . log creation = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | ..............................
[2025-10-10 10:43:22] 2025-10-10 14:42:39,205 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 10:43:22] 2025-10-10 14:42:39,205 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-6837512371/pilotlog.txt
[2025-10-10 10:43:22] 2025-10-10 14:42:39,219 | WARNING  | 
[2025-10-10 10:43:22] [begin log extracts]
[2025-10-10 10:43:22] - Log from pilotlog.txt -
[2025-10-10 10:43:22] 2025-10-10 14:42:39,201 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837512371/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | INFO     | extracted standard info from prmon json
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 10:43:22] 2025-10-10 14:42:39,202 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 10:43:22] 2025-10-10 14:42:39,203 | WARNING  | wrong length of table data, x=[1760106999.0, 1760107060.0, 1760107121.0, 1760107182.0], y=[17813.0, 926176.0, 928593.0, 929777.0] (must be same and length>=4)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,203 | INFO     | could have reported an average CPU frequency of 2024 MHz (4 samples)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,203 | INFO     | ..............................
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . Timing measurements:
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . get job = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . initial setup = 2 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . payload setup = 4 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . stage-in = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . payload execution = 238 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . stage-out = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | . log creation = 0 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,204 | INFO     | ..............................
[2025-10-10 10:43:22] 2025-10-10 14:42:39,205 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 10:43:22] 2025-10-10 14:42:39,205 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-6837512371/pilotlog.txt
[2025-10-10 10:43:22] [end log extracts]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,219 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,220 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-10 10:43:22] 2025-10-10 14:42:39,653 | INFO     | 
[2025-10-10 10:43:22] 2025-10-10 14:42:39,654 | INFO     | job summary report
[2025-10-10 10:43:22] 2025-10-10 14:42:39,654 | INFO     | --------------------------------------------------
[2025-10-10 10:43:22] 2025-10-10 14:42:39,654 | INFO     | PanDA job id: 6837512371
[2025-10-10 10:43:22] 2025-10-10 14:42:39,654 | INFO     | task id: 46676269
[2025-10-10 10:43:22] 2025-10-10 14:42:39,654 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 14:40:30,333 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 10:43:22] 2025-10-10 14:42:39,654 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 10:43:22] 2025-10-10 14:42:39,654 | INFO     | pilot state: failed 
[2025-10-10 10:43:22] 2025-10-10 14:42:39,654 | INFO     | transexitcode: 65
[2025-10-10 10:43:22] 2025-10-10 14:42:39,654 | INFO     | exeerrorcode: 65
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | exitcode: 65
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | cpuconsumptiontime: 147 s
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | nevents: 0
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | neventsw: 0
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | pid: 5940
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | pgrp: 5940
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | corecount: 8
[2025-10-10 10:43:22] 2025-10-10 14:42:39,655 | INFO     | event service: False
[2025-10-10 10:43:22] 2025-10-10 14:42:39,656 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 247: 2376567, 248: 2380862, 249: 2380890, 368: 2381184}
[2025-10-10 10:43:22] 2025-10-10 14:42:39,656 | INFO     | --------------------------------------------------
[2025-10-10 10:43:22] 2025-10-10 14:42:39,656 | INFO     | 
[2025-10-10 10:43:22] 2025-10-10 14:42:39,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 10:43:22] 2025-10-10 14:42:39,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,670 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,670 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,670 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,671 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,671 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,671 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,671 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,671 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,671 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,671 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,672 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,672 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,672 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 10:43:22] 2025-10-10 14:42:39,672 | INFO     | job 6837512371 has completed (purged errors)
[2025-10-10 10:43:22] 2025-10-10 14:42:39,672 | INFO     | overall cleanup function is called
[2025-10-10 10:43:22] 2025-10-10 14:42:40,679 | INFO     | --- collectZombieJob: --- 10, [5940]
[2025-10-10 10:43:22] 2025-10-10 14:42:40,679 | INFO     | zombie collector waiting for pid 5940
[2025-10-10 10:43:22] 2025-10-10 14:42:40,679 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 10:43:22] 2025-10-10 14:42:40,679 | INFO     | collected zombie processes
[2025-10-10 10:43:22] 2025-10-10 14:42:40,679 | INFO     | will attempt to kill all subprocesses of pid=5940
[2025-10-10 10:43:22] 2025-10-10 14:42:40,791 | INFO     | process IDs to be killed: [5940] (in reverse order)
[2025-10-10 10:43:22] 2025-10-10 14:42:40,832 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 10:43:22] 2025-10-10 14:42:40,832 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 10:43:22] 2025-10-10 14:42:40,835 | INFO     | did not find any defunct processes belonging to 5940
[2025-10-10 10:43:22] 2025-10-10 14:42:40,837 | INFO     | did not find any defunct processes belonging to 5940
[2025-10-10 10:43:22] 2025-10-10 14:42:40,837 | INFO     | ready for new job
[2025-10-10 10:43:22] 2025-10-10 14:42:40,837 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 10:43:22] 2025-10-10 14:42:40,839 | INFO     | ***************************************
[2025-10-10 10:43:22] 2025-10-10 14:42:40,839 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 10:43:22] 2025-10-10 14:42:40,839 | INFO     | ***************************************
[2025-10-10 10:43:22] 2025-10-10 14:42:40,839 | INFO     | 
[2025-10-10 10:43:22] 2025-10-10 14:42:40,840 | INFO     | architecture information:
[2025-10-10 10:43:22] 2025-10-10 14:42:40,840 | INFO     | executing command: cat /etc/os-release
[2025-10-10 10:43:22] 2025-10-10 14:42:40,850 | INFO     | cat /etc/os-release:
[2025-10-10 10:43:22] NAME="CentOS Linux"
[2025-10-10 10:43:22] VERSION="7 (Core)"
[2025-10-10 10:43:22] ID="centos"
[2025-10-10 10:43:22] ID_LIKE="rhel fedora"
[2025-10-10 10:43:22] VERSION_ID="7"
[2025-10-10 10:43:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 10:43:22] ANSI_COLOR="0;31"
[2025-10-10 10:43:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 10:43:22] HOME_URL="https://www.centos.org/"
[2025-10-10 10:43:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 10:43:22] 
[2025-10-10 10:43:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 10:43:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 10:43:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 10:43:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 10:43:22] 
[2025-10-10 10:43:22] 2025-10-10 14:42:40,851 | INFO     | ***************************************
[2025-10-10 10:43:22] 2025-10-10 14:42:41,353 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 10:43:22] 2025-10-10 14:42:41,366 | INFO     | sufficient remaining disk space (27835498496 B)
[2025-10-10 10:43:22] 2025-10-10 14:42:41,367 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 10:43:22] 2025-10-10 14:42:41,367 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 10:43:22] 2025-10-10 14:42:41,367 | INFO     | update_server=False
[2025-10-10 10:43:22] 2025-10-10 14:42:41,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 10:43:22] 2025-10-10 14:42:41,367 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:43:22] 2025-10-10 14:42:41,367 | INFO     | aborting loop
[2025-10-10 10:43:22] 2025-10-10 14:42:41,377 | INFO     | all payload control threads have been joined
[2025-10-10 10:43:22] 2025-10-10 14:42:41,549 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 10:43:22] 2025-10-10 14:42:41,644 | INFO     | all job control threads have been joined
[2025-10-10 10:43:22] 2025-10-10 14:42:42,322 | INFO     | all data control threads have been joined
[2025-10-10 10:43:22] 2025-10-10 14:42:42,368 | INFO     | [job] retrieve thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:42,373 | INFO     | [job] job monitor thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:42,382 | INFO     | [payload] control thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:42,442 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:42,487 | INFO     | [payload] failed_post thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:42,576 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:42,649 | INFO     | [job] control thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:42,655 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 10:43:22] 2025-10-10 14:42:42,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:42,816 | INFO     | [data] copytool_in thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:43,144 | INFO     | [payload] validate_post thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:43,327 | INFO     | [data] control thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:43,555 | INFO     | [data] copytool_out thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:43,679 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:43,773 | INFO     | [job] validate thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:44,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:43:22] 2025-10-10 14:42:45,324 | INFO     | [job] queue monitor thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:42:46,660 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 10:43:22] 2025-10-10 14:43:11,255 | INFO     | PID=31833 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 10:43:22] 2025-10-10 14:43:11,255 | INFO     | .. there are 3 such processes running
[2025-10-10 10:43:22] 2025-10-10 14:43:11,262 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 10:43:22] 2025-10-10 14:43:11,263 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 10:43:22] 2025-10-10 14:43:11,263 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 10:43:22] 2025-10-10 14:43:16,444 | INFO     | [monitor] cgroup control has ended
[2025-10-10 10:43:22] 2025-10-10 14:43:16,848 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201424746304)>', '<ExcThread(monitor, started 140200986523392)>']
[2025-10-10 10:43:22] 2025-10-10 14:43:17,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 10:43:22] 2025-10-10 14:43:17,291 | INFO     | [monitor] control thread has ended
[2025-10-10 10:43:22] 2025-10-10 14:43:21,873 | INFO     | all workflow threads have been joined
[2025-10-10 10:43:22] 2025-10-10 14:43:21,873 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 10:43:22] 2025-10-10 14:43:21,873 | INFO     | traces error code: 0
[2025-10-10 10:43:22] 2025-10-10 14:43:21,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 10:43:22] 2025-10-10 14:43:21,952 [wrapper] ==== pilot stdout END ====
[2025-10-10 10:43:22] 2025-10-10 14:43:21,954 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 10:43:22] 2025-10-10 14:43:21,956 [wrapper] pilotpid: 31833
[2025-10-10 10:43:22] 2025-10-10 14:43:21,958 [wrapper] Pilot exit status: 0
[2025-10-10 10:43:22] 2025-10-10 14:43:21,965 [wrapper] pandaids: 6837512371
[2025-10-10 10:43:22] 2025-10-10 14:43:21,991 [wrapper] cleanup supervisor_pilot 31839 31834
[2025-10-10 10:43:22] 2025-10-10 14:43:21,993 [wrapper] Test setup, not cleaning
[2025-10-10 10:43:22] 2025-10-10 14:43:21,995 [wrapper] apfmon messages muted
[2025-10-10 10:43:22] 2025-10-10 14:43:21,997 [wrapper] ==== wrapper stdout END ====
[2025-10-10 10:43:22] 2025-10-10 14:43:21,999 [wrapper] ==== wrapper stderr END ====
[2025-10-10 10:43:22]  *** Error codes and diagnostics ***
[2025-10-10 10:43:22]     "exeErrorCode": 65,
[2025-10-10 10:43:22]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-10 10:43:22]     "pilotErrorCode": 1305,
[2025-10-10 10:43:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-10 10:43:22]  *** Listing of results directory ***
[2025-10-10 10:43:22] total 217820
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 04:34 pilot3.tar.gz
[2025-10-10 10:43:22] -rwx------ 1 boincer umatlas     36292 Oct 10 04:57 runpilot2-wrapper.sh
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 04:57 queuedata.json
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas       100 Oct 10 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 10:43:22] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 10:36 run_atlas
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas       105 Oct 10 10:36 job.xml
[2025-10-10 10:43:22] -rw-r--r-- 2 boincer umatlas 218798893 Oct 10 10:36 EVNT.46676267._001449.pool.root.1
[2025-10-10 10:43:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 10:36 start_atlas.sh
[2025-10-10 10:43:22] drwxrwx--x 2 boincer umatlas      4096 Oct 10 10:36 shared
[2025-10-10 10:43:22] -rw-r--r-- 2 boincer umatlas    569678 Oct 10 10:36 input.tar.gz
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas         0 Oct 10 10:36 boinc_lockfile
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas      2550 Oct 10 10:36 pandaJob.out
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas    975525 Oct 10 10:36 agis_schedconf.cvmfs.json
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas   1560580 Oct 10 10:36 agis_ddmendpoints.agis.ALL.json
[2025-10-10 10:43:22] drwx------ 5 boincer umatlas      4096 Oct 10 10:36 pilot3
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas      5947 Oct 10 10:38 init_data.xml
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas       525 Oct 10 10:39 boinc_task_state.xml
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas      1036 Oct 10 10:40 memory_monitor_summary.json
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas     58337 Oct 10 10:40 log.46676269._035649.job.log.tgz.1
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas        95 Oct 10 10:42 pilot_heartbeat.json
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas     10586 Oct 10 10:42 heartbeat.json
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 10:42 boinc_mmap_file
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas        23 Oct 10 10:42 wrapper_checkpoint.txt
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas      4821 Oct 10 10:43 pilotlog.txt
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas    111985 Oct 10 10:43 log.46676269._035649.job.log.1
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas       188 Oct 10 10:43 output.list
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas       620 Oct 10 10:43 runtime_log
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas    194560 Oct 10 10:43 result.tar.gz
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas       646 Oct 10 10:43 zs7NDmb7NR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJfPMDmhtFLxn.diag
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas      8545 Oct 10 10:43 runtime_log.err
[2025-10-10 10:43:22] -rw-r--r-- 1 boincer umatlas     22426 Oct 10 10:43 stderr.txt
[2025-10-10 10:43:22] No HITS result produced
[2025-10-10 10:43:22]  *** Contents of shared directory: ***
[2025-10-10 10:43:22] total 214440
[2025-10-10 10:43:22] -rw-r--r-- 2 boincer umatlas 218798893 Oct 10 10:36 ATLAS.root_0
[2025-10-10 10:43:22] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 10:36 start_atlas.sh
[2025-10-10 10:43:22] -rw-r--r-- 2 boincer umatlas    569678 Oct 10 10:36 input.tar.gz
[2025-10-10 10:43:22] -rw------- 1 boincer umatlas    194560 Oct 10 10:43 result.tar.gz
10:43:23 (28155): run_atlas exited; CPU time 146.596282
10:43:23 (28155): called boinc_finish(0)

</stderr_txt>
]]>

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