Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:33:35 (484293): wrapper (7.7.26015): starting
10:33:35 (484293): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 10:33:35] Arguments: --nthreads 8
[2025-10-10 10:33:35] Threads: 8
[2025-10-10 10:33:35] Checking for CVMFS
[2025-10-10 10:33:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 10:33:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 10:33:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 10:33:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 10:33:37] 2.13.2.0 8406 33751 108584 151548 0 310 29259759 40960000 25900 16776704 0 213524564 99.845 80617052 49372 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 10:33:37] CVMFS is ok
[2025-10-10 10:33:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 10:33:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 10:33:37] Further information can be found at the LHC@home message board.
[2025-10-10 10:33:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 10:33:37] Checking for apptainer binary...
[2025-10-10 10:33:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 10:33:37] Running /usr/bin/apptainer --version
[2025-10-10 10:33:37] apptainer version 1.4.3-1.el9
[2025-10-10 10:33:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 10:33:37] c-208-37.aglt2.org
[2025-10-10 10:33:37] apptainer works
[2025-10-10 10:33:37] Set ATHENA_PROC_NUMBER=8
[2025-10-10 10:33:37] Set ATHENA_CORE_NUMBER=8
[2025-10-10 10:33:37] Starting ATLAS job with PandaID=6837512343
[2025-10-10 10:33:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 10:44:22]  *** The last 200 lines of the pilot log: ***
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | wrong length of table data, x=[1760106929.0, 1760106990.0, 1760107051.0, 1760107112.0, 1760107173.0, 1760107234.0], y=[875.0, 1182286.0, 983194.0, 989506.0, 154080
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | INFO     | could have reported an average CPU frequency of 3717 MHz (4 samples)
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | INFO     | ..............................
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | INFO     | . Timing measurements:
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . get job = 0 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . initial setup = 2 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . payload setup = 22 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . stage-in = 0 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . payload execution = 338 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . stage-out = 1 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . log creation = 0 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | ..............................
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/2/PanDA_Pilot-6837512343/pilotlog.txt
[2025-10-10 10:44:22] 2025-10-10 14:43:22,406 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 10:44:22] - Log from pilotlog.txt -
[2025-10-10 10:44:22] 2025-10-10 14:43:22,370 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6837512343/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 10:44:22] 2025-10-10 14:43:22,370 | INFO     | extracted standard info from prmon json
[2025-10-10 10:44:22] 2025-10-10 14:43:22,370 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | wrong length of table data, x=[1760106929.0, 1760106990.0, 1760107051.0, 1760107112.0, 1760107173.0, 1760107234.0], y=[875.0, 1182286.0, 983194.0, 989506.0, 154080
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | INFO     | could have reported an average CPU frequency of 3717 MHz (4 samples)
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | INFO     | ..............................
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | INFO     | . Timing measurements:
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . get job = 0 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . initial setup = 2 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . payload setup = 22 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . stage-in = 0 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . payload execution = 338 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . stage-out = 1 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . log creation = 0 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | ..............................
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/2/PanDA_Pilot-6837512343/pilotlog.txt
[2025-10-10 10:44:22] 2025-10-10 14:43:22,407 | WARNING  | 
[2025-10-10 10:44:22] [begin log extracts]
[2025-10-10 10:44:22] - Log from pilotlog.txt -
[2025-10-10 10:44:22] 2025-10-10 14:43:22,370 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6837512343/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 10:44:22] 2025-10-10 14:43:22,370 | INFO     | extracted standard info from prmon json
[2025-10-10 10:44:22] 2025-10-10 14:43:22,370 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | WARNING  | wrong length of table data, x=[1760106929.0, 1760106990.0, 1760107051.0, 1760107112.0, 1760107173.0, 1760107234.0], y=[875.0, 1182286.0, 983194.0, 989506.0, 154080
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | INFO     | could have reported an average CPU frequency of 3717 MHz (4 samples)
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | INFO     | ..............................
[2025-10-10 10:44:22] 2025-10-10 14:43:22,371 | INFO     | . Timing measurements:
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . get job = 0 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . initial setup = 2 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . payload setup = 22 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . stage-in = 0 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . payload execution = 338 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . stage-out = 1 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | . log creation = 0 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | ..............................
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 10:44:22] 2025-10-10 14:43:22,372 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/2/PanDA_Pilot-6837512343/pilotlog.txt
[2025-10-10 10:44:22] [end log extracts]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,407 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 10:44:22] 2025-10-10 14:43:22,407 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-10 10:44:22] 2025-10-10 14:43:22,563 | INFO     | 
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | job summary report
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | --------------------------------------------------
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | PanDA job id: 6837512343
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | task id: 46676269
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 14:40:48,410 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | pilot state: failed 
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | transexitcode: 65
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | exeerrorcode: 65
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | exitcode: 65
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | cpuconsumptiontime: 100 s
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | nevents: 0
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | neventsw: 0
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | pid: 497384
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | pgrp: 497384
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | corecount: 8
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | event service: False
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | sizes: {0: 2348686, 1: 2348885, 11: 2348885, 17: 2349175, 22: 2349203, 362: 2376745, 364: 2381156, 509: 2381294}
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | --------------------------------------------------
[2025-10-10 10:44:22] 2025-10-10 14:43:22,564 | INFO     | 
[2025-10-10 10:44:22] 2025-10-10 14:43:22,565 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,686 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,687 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,687 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,687 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,687 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 10:44:22] 2025-10-10 14:43:22,687 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,687 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 10:44:22] 2025-10-10 14:43:22,687 | INFO     | job 6837512343 has completed (purged errors)
[2025-10-10 10:44:22] 2025-10-10 14:43:22,687 | INFO     | overall cleanup function is called
[2025-10-10 10:44:22] 2025-10-10 14:43:23,694 | INFO     | --- collectZombieJob: --- 10, [497384]
[2025-10-10 10:44:22] 2025-10-10 14:43:23,694 | INFO     | zombie collector waiting for pid 497384
[2025-10-10 10:44:22] 2025-10-10 14:43:23,694 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 10:44:22] 2025-10-10 14:43:23,695 | INFO     | collected zombie processes
[2025-10-10 10:44:22] 2025-10-10 14:43:23,695 | INFO     | will attempt to kill all subprocesses of pid=497384
[2025-10-10 10:44:22] 2025-10-10 14:43:24,806 | INFO     | process IDs to be killed: [497384] (in reverse order)
[2025-10-10 10:44:22] 2025-10-10 14:43:25,338 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 10:44:22] 2025-10-10 14:43:25,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 10:44:22] 2025-10-10 14:43:25,374 | INFO     | did not find any defunct processes belonging to 497384
[2025-10-10 10:44:22] 2025-10-10 14:43:25,414 | INFO     | did not find any defunct processes belonging to 497384
[2025-10-10 10:44:22] 2025-10-10 14:43:25,414 | INFO     | ready for new job
[2025-10-10 10:44:22] 2025-10-10 14:43:25,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 10:44:22] 2025-10-10 14:43:25,420 | INFO     | ***************************************
[2025-10-10 10:44:22] 2025-10-10 14:43:25,421 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 10:44:22] 2025-10-10 14:43:25,421 | INFO     | ***************************************
[2025-10-10 10:44:22] 2025-10-10 14:43:25,421 | INFO     | 
[2025-10-10 10:44:22] 2025-10-10 14:43:25,429 | INFO     | architecture information:
[2025-10-10 10:44:22] 2025-10-10 14:43:25,430 | INFO     | executing command: cat /etc/os-release
[2025-10-10 10:44:22] 2025-10-10 14:43:25,492 | INFO     | cat /etc/os-release:
[2025-10-10 10:44:22] NAME="CentOS Linux"
[2025-10-10 10:44:22] VERSION="7 (Core)"
[2025-10-10 10:44:22] ID="centos"
[2025-10-10 10:44:22] ID_LIKE="rhel fedora"
[2025-10-10 10:44:22] VERSION_ID="7"
[2025-10-10 10:44:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 10:44:22] ANSI_COLOR="0;31"
[2025-10-10 10:44:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 10:44:22] HOME_URL="https://www.centos.org/"
[2025-10-10 10:44:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 10:44:22] 
[2025-10-10 10:44:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 10:44:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 10:44:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 10:44:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 10:44:22] 
[2025-10-10 10:44:22] 2025-10-10 14:43:25,493 | INFO     | ***************************************
[2025-10-10 10:44:22] 2025-10-10 14:43:25,996 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-10 10:44:22] 2025-10-10 14:43:26,082 | INFO     | sufficient remaining disk space (169786474496 B)
[2025-10-10 10:44:22] 2025-10-10 14:43:26,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 10:44:22] 2025-10-10 14:43:26,082 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 10:44:22] 2025-10-10 14:43:26,082 | INFO     | update_server=False
[2025-10-10 10:44:22] 2025-10-10 14:43:26,082 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 10:44:22] 2025-10-10 14:43:26,083 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 10:44:22] 2025-10-10 14:43:26,958 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:44:22] 2025-10-10 14:43:26,959 | INFO     | aborting loop
[2025-10-10 10:44:22] 2025-10-10 14:43:27,083 | INFO     | all data control threads have been joined
[2025-10-10 10:44:22] 2025-10-10 14:43:27,087 | INFO     | [job] retrieve thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:27,504 | INFO     | all payload control threads have been joined
[2025-10-10 10:44:22] 2025-10-10 14:43:27,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:44:22] 2025-10-10 14:43:27,609 | INFO     | [data] copytool_in thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:27,717 | INFO     | all job control threads have been joined
[2025-10-10 10:44:22] 2025-10-10 14:43:27,789 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:27,854 | INFO     | [job] validate thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:27,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 10:44:22] 2025-10-10 14:43:27,957 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:27,964 | INFO     | [job] job monitor thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:28,012 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:28,089 | INFO     | [data] control thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:28,093 | INFO     | [data] copytool_out thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:28,285 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:28,487 | INFO     | [payload] failed_post thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:28,510 | INFO     | [payload] control thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:28,576 | INFO     | [payload] validate_post thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:28,601 | INFO     | [job] queue monitor thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:28,723 | INFO     | [job] control thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:31,959 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 10:44:22] 2025-10-10 14:43:55,002 | INFO     | PID=488170 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 10:44:22] 2025-10-10 14:43:55,003 | INFO     | .. there are 24 such processes running
[2025-10-10 10:44:22] 2025-10-10 14:43:55,003 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 10:44:22] 2025-10-10 14:43:55,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 10:44:22] 2025-10-10 14:43:55,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 10:44:22] 2025-10-10 14:44:14,123 | INFO     | [monitor] cgroup control has ended
[2025-10-10 10:44:22] 2025-10-10 14:44:15,923 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140601827657536)>', '<ExcThread(monitor, started 140601072785152)>']
[2025-10-10 10:44:22] 2025-10-10 14:44:16,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 10:44:22] 2025-10-10 14:44:16,127 | INFO     | [monitor] control thread has ended
[2025-10-10 10:44:22] 2025-10-10 14:44:20,949 | INFO     | all workflow threads have been joined
[2025-10-10 10:44:22] 2025-10-10 14:44:20,949 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 10:44:22] 2025-10-10 14:44:20,950 | INFO     | traces error code: 0
[2025-10-10 10:44:22] 2025-10-10 14:44:20,950 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 10:44:22] 2025-10-10 14:44:21,251 [wrapper] ==== pilot stdout END ====
[2025-10-10 10:44:22] 2025-10-10 14:44:21,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 10:44:22] 2025-10-10 14:44:21,285 [wrapper] pilotpid: 488170
[2025-10-10 10:44:22] 2025-10-10 14:44:21,296 [wrapper] Pilot exit status: 0
[2025-10-10 10:44:22] 2025-10-10 14:44:21,368 [wrapper] pandaids: 6837512343
[2025-10-10 10:44:22] 2025-10-10 14:44:21,944 [wrapper] cleanup supervisor_pilot  488176 488171
[2025-10-10 10:44:22] 2025-10-10 14:44:21,994 [wrapper] Test setup, not cleaning
[2025-10-10 10:44:22] 2025-10-10 14:44:22,017 [wrapper] apfmon messages muted
[2025-10-10 10:44:22] 2025-10-10 14:44:22,060 [wrapper] ==== wrapper stdout END ====
[2025-10-10 10:44:22] 2025-10-10 14:44:22,084 [wrapper] ==== wrapper stderr END ====
[2025-10-10 10:44:22]  *** Error codes and diagnostics ***
[2025-10-10 10:44:22]     "exeErrorCode": 65,
[2025-10-10 10:44:22]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-10 10:44:22]     "pilotErrorCode": 1305,
[2025-10-10 10:44:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-10 10:44:22]  *** Listing of results directory ***
[2025-10-10 10:44:22] total 222628
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 04:34 pilot3.tar.gz
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 04:56 queuedata.json
[2025-10-10 10:44:22] -rwx------. 1 boincer umatlas     36292 Oct 10 04:56 runpilot2-wrapper.sh
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas       100 Oct 10 10:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 10:44:22] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 10:33 run_atlas
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas       105 Oct 10 10:33 job.xml
[2025-10-10 10:44:22] -rw-r--r--. 2 boincer umatlas 223678188 Oct 10 10:33 EVNT.46676267._001448.pool.root.1
[2025-10-10 10:44:22] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 10:33 start_atlas.sh
[2025-10-10 10:44:22] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 10:33 shared
[2025-10-10 10:44:22] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 10:33 input.tar.gz
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas         0 Oct 10 10:33 boinc_lockfile
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 10:33 pandaJob.out
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas    975525 Oct 10 10:34 agis_schedconf.cvmfs.json
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas   1560580 Oct 10 10:34 agis_ddmendpoints.agis.ALL.json
[2025-10-10 10:44:22] drwx------. 5 boincer umatlas      4096 Oct 10 10:34 pilot3
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas       526 Oct 10 10:40 boinc_task_state.xml
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas      7169 Oct 10 10:40 init_data.xml
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas      1034 Oct 10 10:40 memory_monitor_summary.json
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas     59880 Oct 10 10:40 log.46676269._035621.job.log.tgz.1
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas        95 Oct 10 10:43 pilot_heartbeat.json
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas     10517 Oct 10 10:43 heartbeat.json
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas      4824 Oct 10 10:44 pilotlog.txt
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 10:44 boinc_mmap_file
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas        23 Oct 10 10:44 wrapper_checkpoint.txt
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas    132582 Oct 10 10:44 log.46676269._035621.job.log.1
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas       188 Oct 10 10:44 output.list
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas       620 Oct 10 10:44 runtime_log
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas    215040 Oct 10 10:44 result.tar.gz
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas      8550 Oct 10 10:44 runtime_log.err
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas       646 Oct 10 10:44 69WLDmd6NR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmCfPMDmq8t5Jm.diag
[2025-10-10 10:44:22] -rw-r--r--. 1 boincer umatlas     22485 Oct 10 10:44 stderr.txt
[2025-10-10 10:44:22] No HITS result produced
[2025-10-10 10:44:22]  *** Contents of shared directory: ***
[2025-10-10 10:44:22] total 219228
[2025-10-10 10:44:22] -rw-r--r--. 2 boincer umatlas 223678188 Oct 10 10:33 ATLAS.root_0
[2025-10-10 10:44:22] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 10:33 start_atlas.sh
[2025-10-10 10:44:22] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 10:33 input.tar.gz
[2025-10-10 10:44:22] -rw-------. 1 boincer umatlas    215040 Oct 10 10:44 result.tar.gz
10:44:23 (484293): run_atlas exited; CPU time 105.597097
10:44:23 (484293): called boinc_finish(0)

</stderr_txt>
]]>

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