Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:10:41 (2024749): wrapper (7.7.26015): starting
11:10:41 (2024749): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 11:10:41] Arguments: --nthreads 8
[2025-10-10 11:10:41] Threads: 8
[2025-10-10 11:10:41] Checking for CVMFS
[2025-10-10 11:10:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 11:10:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 11:10:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 11:10:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 11:10:43] 2.13.1.0 3059378 46101 97928 151550 3 296 37616445 40960000 10423 16776704 0 42513535 99.799 26429078 43516 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 11:10:43] CVMFS is ok
[2025-10-10 11:10:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 11:10:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 11:10:43] Further information can be found at the LHC@home message board.
[2025-10-10 11:10:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 11:10:43] Checking for apptainer binary...
[2025-10-10 11:10:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 11:10:43] Running /usr/bin/apptainer --version
[2025-10-10 11:10:43] apptainer version 1.4.3-1.el9
[2025-10-10 11:10:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 11:10:43] c-211-9.aglt2.org
[2025-10-10 11:10:43] apptainer works
[2025-10-10 11:10:43] Set ATHENA_PROC_NUMBER=8
[2025-10-10 11:10:43] Set ATHENA_CORE_NUMBER=8
[2025-10-10 11:10:44] Starting ATLAS job with PandaID=6837555253
[2025-10-10 11:10:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:20:04 (2024749): BOINC client no longer exists - exiting
13:20:04 (2024749): timer handler: client dead, exiting
13:27:26 (2248090): wrapper (7.7.26015): starting
13:27:26 (2248090): wrapper: running run_atlas (--nthreads 11)
[2025-10-10 13:27:26] Arguments: --nthreads 11
[2025-10-10 13:27:26] Threads: 11
[2025-10-10 13:27:26] This job has been restarted, cleaning up previous attempt
[2025-10-10 13:27:26] Checking for CVMFS
[2025-10-10 13:27:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 13:27:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 13:27:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 13:27:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 13:27:27] 2.13.1.0 3059378 46237 90128 151556 2 105 37757488 40960001 9777 16776704 0 42696369 99.800 26438538 43497 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 13:27:27] CVMFS is ok
[2025-10-10 13:27:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 13:27:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 13:27:27] Further information can be found at the LHC@home message board.
[2025-10-10 13:27:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 13:27:27] Checking for apptainer binary...
[2025-10-10 13:27:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 13:27:27] Running /usr/bin/apptainer --version
[2025-10-10 13:27:27] apptainer version 1.4.3-1.el9
[2025-10-10 13:27:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 13:27:28] c-211-9.aglt2.org
[2025-10-10 13:27:28] apptainer works
[2025-10-10 13:27:28] Set ATHENA_PROC_NUMBER=11
[2025-10-10 13:27:28] Set ATHENA_CORE_NUMBER=11
[2025-10-10 13:27:28] Starting ATLAS job with PandaID=6837555253
[2025-10-10 13:27:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 21:04:20]  *** The last 200 lines of the pilot log: ***
[2025-10-10 21:04:21] 2025-10-11 01:03:29,107 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2500.005229166667
[2025-10-10 21:04:21] 2025-10-11 01:03:29,237 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6837555253/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 21:04:21] 2025-10-11 01:03:29,238 | INFO     | extracted standard info from prmon json
[2025-10-10 21:04:21] 2025-10-11 01:03:29,238 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 21:04:21] 2025-10-11 01:03:29,238 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 21:04:21] 2025-10-11 01:03:29,239 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 21:04:21] 2025-10-11 01:03:29,239 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 21:04:21] 2025-10-11 01:03:29,302 | INFO     | fitting pss+swap vs Time
[2025-10-10 21:04:21] 2025-10-11 01:03:29,322 | INFO     | sum of square deviations: 27694773485.279697
[2025-10-10 21:04:21] 2025-10-11 01:03:29,369 | INFO     | sum of deviations: 67274707316.5862
[2025-10-10 21:04:21] 2025-10-11 01:03:29,369 | INFO     | mean x: 1760130931.5324385
[2025-10-10 21:04:21] 2025-10-11 01:03:29,370 | INFO     | mean y: 2613875.1319910516
[2025-10-10 21:04:21] 2025-10-11 01:03:29,370 | INFO     | -- intersect: -4273004891.7322125
[2025-10-10 21:04:21] 2025-10-11 01:03:29,370 | INFO     | intersect: -4273004891.7322125
[2025-10-10 21:04:21] 2025-10-11 01:03:29,371 | INFO     | chi2: 3.104713448269729
[2025-10-10 21:04:21] 2025-10-11 01:03:29,371 | INFO     | sum of square deviations: 26775815773.421
[2025-10-10 21:04:21] 2025-10-11 01:03:29,401 | INFO     | sum of deviations: 96226202432.19908
[2025-10-10 21:04:21] 2025-10-11 01:03:29,413 | INFO     | mean x: 1760130779.036199
[2025-10-10 21:04:21] 2025-10-11 01:03:29,414 | INFO     | mean y: 2618634.237556561
[2025-10-10 21:04:21] 2025-10-11 01:03:29,414 | INFO     | -- intersect: -6322891747.366103
[2025-10-10 21:04:21] 2025-10-11 01:03:29,414 | INFO     | intersect: -6322891747.366103
[2025-10-10 21:04:21] 2025-10-11 01:03:29,415 | INFO     | chi2: 2.3766904405175087
[2025-10-10 21:04:21] 2025-10-11 01:03:29,415 | INFO     | current chi2=2.3766904405175087 (change=23.448959779458907 %)
[2025-10-10 21:04:21] 2025-10-11 01:03:29,415 | INFO     | right removable region: 441
[2025-10-10 21:04:21] 2025-10-11 01:03:29,416 | INFO     | sum of square deviations: 26775697616.346203
[2025-10-10 21:04:21] 2025-10-11 01:03:29,447 | INFO     | sum of deviations: -36952575743.0
[2025-10-10 21:04:21] 2025-10-11 01:03:29,448 | INFO     | mean x: 1760131084.0384614
[2025-10-10 21:04:21] 2025-10-11 01:03:29,448 | INFO     | mean y: 2631115.470588235
[2025-10-10 21:04:21] 2025-10-11 01:03:29,448 | INFO     | -- intersect: 2431750914.046184
[2025-10-10 21:04:21] 2025-10-11 01:03:29,448 | INFO     | intersect: 2431750914.046184
[2025-10-10 21:04:21] 2025-10-11 01:03:29,449 | INFO     | chi2: 0.9082832977817542
[2025-10-10 21:04:21] 2025-10-11 01:03:29,450 | INFO     | current chi2=0.9082832977817542 (change=70.74502001825822 %)
[2025-10-10 21:04:21] 2025-10-11 01:03:29,450 | INFO     | sum of square deviations: 25877180272.37978
[2025-10-10 21:04:21] 2025-10-11 01:03:29,526 | INFO     | monitor loop #1815: job 0:6837555253 is in state 'finished'
[2025-10-10 21:04:21] 2025-10-11 01:03:29,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 21:04:21] 2025-10-11 01:03:29,535 | INFO     | sum of deviations: -55949176150.36612
[2025-10-10 21:04:21] 2025-10-11 01:03:29,570 | INFO     | mean x: 1760131236.5446224
[2025-10-10 21:04:21] 2025-10-11 01:03:29,571 | INFO     | mean y: 2634330.9931350113
[2025-10-10 21:04:21] 2025-10-11 01:03:29,571 | INFO     | -- intersect: 3808222558.3282437
[2025-10-10 21:04:21] 2025-10-11 01:03:29,571 | INFO     | intersect: 3808222558.3282437
[2025-10-10 21:04:21] 2025-10-11 01:03:29,572 | INFO     | chi2: 0.8314364041316141
[2025-10-10 21:04:21] 2025-10-11 01:03:29,572 | INFO     | current chi2=0.8314364041316141 (change=8.460674531593682 %)
[2025-10-10 21:04:21] 2025-10-11 01:03:29,572 | INFO     | left removable region: 20
[2025-10-10 21:04:21] 2025-10-11 01:03:29,613 | INFO     | sum of square deviations: 23137648064.1521
[2025-10-10 21:04:21] 2025-10-11 01:03:29,638 | INFO     | sum of deviations: -11660130859.912117
[2025-10-10 21:04:21] 2025-10-11 01:03:29,639 | INFO     | mean x: 1760131358.5510688
[2025-10-10 21:04:21] 2025-10-11 01:03:29,639 | INFO     | mean y: 2636804.6935866983
[2025-10-10 21:04:21] 2025-10-11 01:03:29,639 | INFO     | -- intersect: 889648393.530823
[2025-10-10 21:04:21] 2025-10-11 01:03:29,639 | INFO     | intersect: 889648393.530823
[2025-10-10 21:04:21] 2025-10-11 01:03:29,640 | INFO     | chi2: 0.07430753507486801
[2025-10-10 21:04:21] 2025-10-11 01:03:29,641 | INFO     | -- intersect: 889648393.530823
[2025-10-10 21:04:21] 2025-10-11 01:03:29,641 | INFO     | current memory leak: -0.50 B/s (using 421 data points, chi2=0.07)
[2025-10-10 21:04:21] 2025-10-11 01:03:29,642 | INFO     | could have reported an average CPU frequency of 2525 MHz (18 samples)
[2025-10-10 21:04:21] 2025-10-11 01:03:29,642 | INFO     | ..............................
[2025-10-10 21:04:21] 2025-10-11 01:03:29,642 | INFO     | . Timing measurements:
[2025-10-10 21:04:21] 2025-10-11 01:03:29,643 | INFO     | . get job = 0 s
[2025-10-10 21:04:21] 2025-10-11 01:03:29,643 | INFO     | . initial setup = 2 s
[2025-10-10 21:04:21] 2025-10-11 01:03:29,643 | INFO     | . payload setup = 17 s
[2025-10-10 21:04:21] 2025-10-11 01:03:29,643 | INFO     | . stage-in = 0 s
[2025-10-10 21:04:21] 2025-10-11 01:03:29,643 | INFO     | . payload execution = 27256 s
[2025-10-10 21:04:21] 2025-10-11 01:03:29,644 | INFO     | . stage-out = 7 s
[2025-10-10 21:04:21] 2025-10-11 01:03:29,644 | INFO     | . log creation = 2 s
[2025-10-10 21:04:21] 2025-10-11 01:03:29,644 | INFO     | ..............................
[2025-10-10 21:04:21] 2025-10-11 01:03:30,149 | INFO     | 
[2025-10-10 21:04:21] 2025-10-11 01:03:30,150 | INFO     | job summary report
[2025-10-10 21:04:21] 2025-10-11 01:03:30,150 | INFO     | --------------------------------------------------
[2025-10-10 21:04:21] 2025-10-11 01:03:30,150 | INFO     | PanDA job id: 6837555253
[2025-10-10 21:04:21] 2025-10-11 01:03:30,150 | INFO     | task id: 46676269
[2025-10-10 21:04:21] 2025-10-11 01:03:30,150 | INFO     | errors: (none)
[2025-10-10 21:04:21] 2025-10-11 01:03:30,150 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 21:04:21] 2025-10-11 01:03:30,150 | INFO     | pilot state: finished 
[2025-10-10 21:04:21] 2025-10-11 01:03:30,150 | INFO     | transexitcode: 0
[2025-10-10 21:04:21] 2025-10-11 01:03:30,150 | INFO     | exeerrorcode: 0
[2025-10-10 21:04:21] 2025-10-11 01:03:30,151 | INFO     | exeerrordiag: 
[2025-10-10 21:04:21] 2025-10-11 01:03:30,151 | INFO     | exitcode: 0
[2025-10-10 21:04:21] 2025-10-11 01:03:30,151 | INFO     | exitmsg: OK
[2025-10-10 21:04:21] 2025-10-11 01:03:30,151 | INFO     | cpuconsumptiontime: 62711 s
[2025-10-10 21:04:21] 2025-10-11 01:03:30,151 | INFO     | nevents: 400
[2025-10-10 21:04:21] 2025-10-11 01:03:30,151 | INFO     | neventsw: 0
[2025-10-10 21:04:21] 2025-10-11 01:03:30,151 | INFO     | pid: 2268225
[2025-10-10 21:04:21] 2025-10-11 01:03:30,151 | INFO     | pgrp: 2268225
[2025-10-10 21:04:21] 2025-10-11 01:03:30,151 | INFO     | corecount: 11
[2025-10-10 21:04:21] 2025-10-11 01:03:30,152 | INFO     | event service: False
[2025-10-10 21:04:21] 2025-10-11 01:03:30,152 | INFO     | sizes: {0: 2348857, 1: 2348885, 8: 2349147, 12: 2349175, 27278: 2386176, 27286: 2395358, 27313: 2395496}
[2025-10-10 21:04:21] 2025-10-11 01:03:30,152 | INFO     | --------------------------------------------------
[2025-10-10 21:04:21] 2025-10-11 01:03:30,152 | INFO     | 
[2025-10-10 21:04:21] 2025-10-11 01:03:30,152 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-10 21:04:21] 2025-10-11 01:03:30,213 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,213 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,213 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,213 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,214 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,214 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,214 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,214 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,214 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,214 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,214 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,215 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,215 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,215 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 21:04:21] 2025-10-11 01:03:30,215 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,216 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 21:04:21] 2025-10-11 01:03:30,216 | INFO     | job 6837555253 has completed (purged errors)
[2025-10-10 21:04:21] 2025-10-11 01:03:30,220 | INFO     | overall cleanup function is called
[2025-10-10 21:04:21] 2025-10-11 01:03:30,690 | INFO     | PID=2255441 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 21:04:21] 2025-10-11 01:03:30,690 | INFO     | .. there are 9 such processes running
[2025-10-10 21:04:21] 2025-10-11 01:03:31,229 | INFO     | --- collectZombieJob: --- 10, [2268225]
[2025-10-10 21:04:21] 2025-10-11 01:03:31,229 | INFO     | zombie collector waiting for pid 2268225
[2025-10-10 21:04:21] 2025-10-11 01:03:31,230 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 21:04:21] 2025-10-11 01:03:31,230 | INFO     | collected zombie processes
[2025-10-10 21:04:21] 2025-10-11 01:03:31,230 | INFO     | will attempt to kill all subprocesses of pid=2268225
[2025-10-10 21:04:21] 2025-10-11 01:03:31,694 | INFO     | process IDs to be killed: [2268225] (in reverse order)
[2025-10-10 21:04:21] 2025-10-11 01:03:31,807 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 21:04:21] 2025-10-11 01:03:31,807 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 21:04:21] 2025-10-11 01:03:31,817 | INFO     | did not find any defunct processes belonging to 2268225
[2025-10-10 21:04:21] 2025-10-11 01:03:31,848 | INFO     | did not find any defunct processes belonging to 2268225
[2025-10-10 21:04:21] 2025-10-11 01:03:31,848 | INFO     | ready for new job
[2025-10-10 21:04:21] 2025-10-11 01:03:31,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 21:04:21] 2025-10-11 01:03:31,884 | INFO     | ***************************************
[2025-10-10 21:04:21] 2025-10-11 01:03:31,884 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 21:04:21] 2025-10-11 01:03:31,884 | INFO     | ***************************************
[2025-10-10 21:04:21] 2025-10-11 01:03:31,885 | INFO     | 
[2025-10-10 21:04:21] 2025-10-11 01:03:31,930 | INFO     | architecture information:
[2025-10-10 21:04:21] 2025-10-11 01:03:31,969 | INFO     | executing command: cat /etc/os-release
[2025-10-10 21:04:21] 2025-10-11 01:03:32,049 | INFO     | cat /etc/os-release:
[2025-10-10 21:04:21] NAME="CentOS Linux"
[2025-10-10 21:04:21] VERSION="7 (Core)"
[2025-10-10 21:04:21] ID="centos"
[2025-10-10 21:04:21] ID_LIKE="rhel fedora"
[2025-10-10 21:04:21] VERSION_ID="7"
[2025-10-10 21:04:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 21:04:21] ANSI_COLOR="0;31"
[2025-10-10 21:04:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 21:04:21] HOME_URL="https://www.centos.org/"
[2025-10-10 21:04:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 21:04:21] 
[2025-10-10 21:04:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 21:04:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 21:04:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 21:04:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 21:04:21] 
[2025-10-10 21:04:21] 2025-10-11 01:03:32,050 | INFO     | ***************************************
[2025-10-10 21:04:21] 2025-10-11 01:03:32,553 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-10 21:04:21] 2025-10-11 01:03:32,672 | INFO     | sufficient remaining disk space (63225987072 B)
[2025-10-10 21:04:21] 2025-10-11 01:03:32,672 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 21:04:21] 2025-10-11 01:03:32,672 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 21:04:21] 2025-10-11 01:03:32,672 | INFO     | update_server=False
[2025-10-10 21:04:21] 2025-10-11 01:03:32,673 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 21:04:21] 2025-10-11 01:03:32,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 21:04:21] 2025-10-11 01:03:33,080 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 21:04:21] 2025-10-11 01:03:33,081 | INFO     | aborting loop
[2025-10-10 21:04:21] 2025-10-11 01:03:33,673 | INFO     | all job control threads have been joined
[2025-10-10 21:04:21] 2025-10-11 01:03:33,678 | INFO     | [job] retrieve thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:33,712 | INFO     | all payload control threads have been joined
[2025-10-10 21:04:21] 2025-10-11 01:03:33,719 | INFO     | [payload] validate_post thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:33,832 | INFO     | all data control threads have been joined
[2025-10-10 21:04:21] 2025-10-11 01:03:33,939 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:33,987 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:34,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 21:04:21] 2025-10-11 01:03:34,036 | INFO     | [payload] failed_post thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:34,062 | INFO     | [job] validate thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:34,086 | INFO     | [job] job monitor thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:34,607 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:34,619 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:34,679 | INFO     | [job] control thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:34,683 | INFO     | [data] copytool_in thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:34,718 | INFO     | [payload] control thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:34,838 | INFO     | [data] control thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:35,174 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 21:04:21] 2025-10-11 01:03:36,012 | INFO     | [data] copytool_out thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:36,180 | INFO     | [job] queue monitor thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:36,681 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 21:04:21] 2025-10-11 01:03:44,442 | INFO     | [monitor] cgroup control has ended
[2025-10-10 21:04:21] 2025-10-11 01:03:45,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140686084659008)>', '<ExcThread(monitor, started 140685462198016)>']
[2025-10-10 21:04:21] 2025-10-11 01:03:50,521 | INFO     | all workflow threads have been joined
[2025-10-10 21:04:21] 2025-10-11 01:03:50,547 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 21:04:21] 2025-10-11 01:03:50,548 | INFO     | traces error code: 0
[2025-10-10 21:04:21] 2025-10-11 01:03:50,548 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 21:04:21] 2025-10-11 01:04:03,278 | INFO     | PID=2255441 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 21:04:21] 2025-10-11 01:04:03,278 | INFO     | .. there are 8 such processes running
[2025-10-10 21:04:21] 2025-10-11 01:04:03,278 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 21:04:21] 2025-10-11 01:04:03,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 21:04:21] 2025-10-11 01:04:03,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 21:04:21] 2025-10-11 01:04:03,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 21:04:21] 2025-10-11 01:04:03,279 | INFO     | [monitor] control thread has ended
[2025-10-10 21:04:21] 2025-10-11 01:04:03,504 [wrapper] ==== pilot stdout END ====
[2025-10-10 21:04:21] 2025-10-11 01:04:03,545 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 21:04:21] 2025-10-11 01:04:03,605 [wrapper] pilotpid: 2255441
[2025-10-10 21:04:21] 2025-10-11 01:04:03,660 [wrapper] Pilot exit status: 0
[2025-10-10 21:04:21] 2025-10-11 01:04:03,842 [wrapper] pandaids: 6837555253 6837555253
[2025-10-10 21:04:21] 2025-10-11 01:04:04,204 [wrapper] cleanup supervisor_pilot 2859545 2255442
[2025-10-10 21:04:21] 2025-10-11 01:04:04,256 [wrapper] Test setup, not cleaning
[2025-10-10 21:04:21] 2025-10-11 01:04:04,296 [wrapper] apfmon messages muted
[2025-10-10 21:04:21] 2025-10-11 01:04:04,354 [wrapper] ==== wrapper stdout END ====
[2025-10-10 21:04:21] 2025-10-11 01:04:04,386 [wrapper] ==== wrapper stderr END ====
[2025-10-10 21:04:21]  *** Error codes and diagnostics ***
[2025-10-10 21:04:21]     "exeErrorCode": 0,
[2025-10-10 21:04:21]     "exeErrorDiag": "",
[2025-10-10 21:04:21]     "pilotErrorCode": 0,
[2025-10-10 21:04:21]     "pilotErrorDiag": "",
[2025-10-10 21:04:21]  *** Listing of results directory ***
[2025-10-10 21:04:21] total 629576
[2025-10-10 21:04:21] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 05:06 pilot3.tar.gz
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 05:10 queuedata.json
[2025-10-10 21:04:21] -rwx------. 1 boincer umatlas     36292 Oct 10 05:11 runpilot2-wrapper.sh
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas       100 Oct 10 11:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 21:04:21] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 11:10 run_atlas
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas       105 Oct 10 11:10 job.xml
[2025-10-10 21:04:21] -rw-r--r--. 3 boincer umatlas 220291912 Oct 10 11:10 EVNT.46676267._001455.pool.root.1
[2025-10-10 21:04:21] -rw-r--r--. 3 boincer umatlas 220291912 Oct 10 11:10 ATLAS.root_0
[2025-10-10 21:04:21] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 11:10 start_atlas.sh
[2025-10-10 21:04:21] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 11:10 shared
[2025-10-10 21:04:21] -rw-r--r--. 2 boincer umatlas    569682 Oct 10 11:10 input.tar.gz
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas         0 Oct 10 11:10 boinc_lockfile
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 13:27 pandaJob.out
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas    975525 Oct 10 13:27 agis_schedconf.cvmfs.json
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas 191564000 Oct 10 21:01 HITS.46676269._035801.pool.root.1
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas       531 Oct 10 21:01 boinc_task_state.xml
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas      1055 Oct 10 21:02 memory_monitor_summary.json
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas   1560580 Oct 10 21:02 agis_ddmendpoints.agis.ALL.json
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas    688475 Oct 10 21:03 log.46676269._035801.job.log.tgz.1
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas      7850 Oct 10 21:03 heartbeat.json
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas        96 Oct 10 21:03 pilot_heartbeat.json
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas       822 Oct 10 21:04 pilotlog.txt
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas   3621080 Oct 10 21:04 log.46676269._035801.job.log.1
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas       357 Oct 10 21:04 output.list
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas       620 Oct 10 21:04 runtime_log
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas   4331520 Oct 10 21:04 result.tar.gz
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas      8786 Oct 10 21:04 runtime_log.err
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas       788 Oct 10 21:04 G66MDmQLOR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmegPMDmOkuVxn.diag
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas      6613 Oct 10 21:04 init_data.xml
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 21:04 boinc_mmap_file
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas        28 Oct 10 21:04 wrapper_checkpoint.txt
[2025-10-10 21:04:21] -rw-r--r--. 1 boincer umatlas     23570 Oct 10 21:04 stderr.txt
[2025-10-10 21:04:21] HITS file was successfully produced:
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas 191564000 Oct 10 21:01 shared/HITS.pool.root.1
[2025-10-10 21:04:21]  *** Contents of shared directory: ***
[2025-10-10 21:04:21] total 407024
[2025-10-10 21:04:21] -rw-r--r--. 3 boincer umatlas 220291912 Oct 10 11:10 ATLAS.root_0
[2025-10-10 21:04:21] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 11:10 start_atlas.sh
[2025-10-10 21:04:21] -rw-r--r--. 2 boincer umatlas    569682 Oct 10 11:10 input.tar.gz
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas 191564000 Oct 10 21:01 HITS.pool.root.1
[2025-10-10 21:04:21] -rw-------. 1 boincer umatlas   4331520 Oct 10 21:04 result.tar.gz
21:04:23 (2248090): run_atlas exited; CPU time 63283.912175
21:04:23 (2248090): called boinc_finish(0)

</stderr_txt>
]]>

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