Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:02:39 (121395): wrapper (7.7.26015): starting
14:02:39 (121395): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 14:02:39] Arguments: --nthreads 4
[2025-10-13 14:02:39] Threads: 4
[2025-10-13 14:02:39] Checking for CVMFS
[2025-10-13 14:02:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:02:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:02:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:02:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:02:39] 2.9.2.0 3113 296 63644 151660 0 57 28872599 36864001 0 130560 0 310335 99.987 13560 973 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 14:02:39] CVMFS is ok
[2025-10-13 14:02:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:02:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:02:39] Further information can be found at the LHC@home message board.
[2025-10-13 14:02:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:02:39] Checking for apptainer binary...
[2025-10-13 14:02:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 14:02:39] Running /usr/bin/apptainer --version
[2025-10-13 14:02:39] apptainer version 1.4.1-1.1
[2025-10-13 14:02:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:02:39] thA325
[2025-10-13 14:02:39] apptainer works
[2025-10-13 14:02:39] Set ATHENA_PROC_NUMBER=4
[2025-10-13 14:02:39] Set ATHENA_CORE_NUMBER=4
[2025-10-13 14:02:39] Starting ATLAS job with PandaID=6837509987
[2025-10-13 14:02:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:11:05]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:11:05] 2025-10-13 13:10:34,274 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:11:05] 2025-10-13 13:10:34,274 | INFO     | collected zombie processes
[2025-10-13 15:11:05] 2025-10-13 13:10:34,274 | INFO     | will attempt to kill all subprocesses of pid=131735
[2025-10-13 15:11:05] 2025-10-13 13:10:34,318 | INFO     | process IDs to be killed: [131735] (in reverse order)
[2025-10-13 15:11:05] 2025-10-13 13:10:34,346 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:11:05] 2025-10-13 13:10:34,347 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:11:05] 2025-10-13 13:10:34,348 | INFO     | did not find any defunct processes belonging to 131735
[2025-10-13 15:11:05] 2025-10-13 13:10:34,349 | INFO     | did not find any defunct processes belonging to 131735
[2025-10-13 15:11:05] 2025-10-13 13:10:34,349 | INFO     | ready for new job
[2025-10-13 15:11:05] 2025-10-13 13:10:34,349 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:11:05] 2025-10-13 13:10:34,350 | INFO     | ***************************************
[2025-10-13 15:11:05] 2025-10-13 13:10:34,350 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 15:11:05] 2025-10-13 13:10:34,350 | INFO     | ***************************************
[2025-10-13 15:11:05] 2025-10-13 13:10:34,350 | INFO     | 
[2025-10-13 15:11:05] 2025-10-13 13:10:34,351 | INFO     | architecture information:
[2025-10-13 15:11:05] 2025-10-13 13:10:34,351 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:11:05] 2025-10-13 13:10:34,362 | INFO     | cat /etc/os-release:
[2025-10-13 15:11:05] NAME="CentOS Linux"
[2025-10-13 15:11:05] VERSION="7 (Core)"
[2025-10-13 15:11:05] ID="centos"
[2025-10-13 15:11:05] ID_LIKE="rhel fedora"
[2025-10-13 15:11:05] VERSION_ID="7"
[2025-10-13 15:11:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:11:05] ANSI_COLOR="0;31"
[2025-10-13 15:11:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:11:05] HOME_URL="https://www.centos.org/"
[2025-10-13 15:11:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:11:05] 
[2025-10-13 15:11:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:11:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:11:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:11:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:11:05] 
[2025-10-13 15:11:05] 2025-10-13 13:10:34,363 | INFO     | ***************************************
[2025-10-13 15:11:05] 2025-10-13 13:10:34,866 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 15:11:05] 2025-10-13 13:10:34,882 | INFO     | sufficient remaining disk space (232001634304 B)
[2025-10-13 15:11:05] 2025-10-13 13:10:34,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:11:05] 2025-10-13 13:10:34,882 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:11:05] 2025-10-13 13:10:34,882 | INFO     | update_server=False
[2025-10-13 15:11:05] 2025-10-13 13:10:34,882 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:11:05] 2025-10-13 13:10:34,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:11:05] 2025-10-13 13:10:34,952 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:11:05] 2025-10-13 13:10:34,952 | INFO     | aborting loop
[2025-10-13 15:11:05] 2025-10-13 13:10:35,167 | INFO     | all payload control threads have been joined
[2025-10-13 15:11:05] 2025-10-13 13:10:35,290 | INFO     | all data control threads have been joined
[2025-10-13 15:11:05] 2025-10-13 13:10:35,417 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:11:05] 2025-10-13 13:10:35,888 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:35,888 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:35,907 | INFO     | all job control threads have been joined
[2025-10-13 15:11:05] 2025-10-13 13:10:35,958 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:35,962 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:36,151 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:36,173 | INFO     | [payload] control thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:36,296 | INFO     | [data] control thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:36,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:11:05] 2025-10-13 13:10:36,792 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:36,862 | INFO     | [job] validate thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:36,913 | INFO     | [job] control thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:36,998 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:37,044 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:37,124 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:37,424 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:40,356 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:45,115 | INFO     | job.realtimelogging is not enabled
[2025-10-13 15:11:05] 2025-10-13 13:10:46,121 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:11:05] 2025-10-13 13:10:50,977 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:11:05] 2025-10-13 13:10:52,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140070682564416)>', '<ExcThread(monitor, started 140070317172480)>']
[2025-10-13 15:11:05] 2025-10-13 13:10:57,857 | INFO     | all workflow threads have been joined
[2025-10-13 15:11:05] 2025-10-13 13:10:57,857 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:11:05] 2025-10-13 13:10:57,858 | INFO     | traces error code: 0
[2025-10-13 15:11:05] 2025-10-13 13:10:57,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:11:05] 2025-10-13 13:11:05,039 | INFO     | PID=125173 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 15:11:05] 2025-10-13 13:11:05,040 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:11:05] 2025-10-13 13:11:05,040 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:11:05] 2025-10-13 13:11:05,040 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:11:05] 2025-10-13 13:11:05,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:11:05] 2025-10-13 13:11:05,040 | INFO     | [monitor] control thread has ended
[2025-10-13 15:11:05] 2025-10-13 13:11:05,103 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:11:05] 2025-10-13 13:11:05,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:11:05] 2025-10-13 13:11:05,110 [wrapper] pilotpid: 125173
[2025-10-13 15:11:05] 2025-10-13 13:11:05,114 [wrapper] Pilot exit status: 0
[2025-10-13 15:11:05] 2025-10-13 13:11:05,123 [wrapper] pandaids: 6837509987
[2025-10-13 15:11:05] 2025-10-13 13:11:05,143 [wrapper] cleanup supervisor_pilot  141446 125174
[2025-10-13 15:11:05] 2025-10-13 13:11:05,146 [wrapper] Test setup, not cleaning
[2025-10-13 15:11:05] 2025-10-13 13:11:05,149 [wrapper] apfmon messages muted
[2025-10-13 15:11:05] 2025-10-13 13:11:05,152 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:11:05] 2025-10-13 13:11:05,156 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:11:05]  *** Error codes and diagnostics ***
[2025-10-13 15:11:05]     "exeErrorCode": 0,
[2025-10-13 15:11:05]     "exeErrorDiag": "",
[2025-10-13 15:11:05]     "pilotErrorCode": 0,
[2025-10-13 15:11:05]     "pilotErrorDiag": "",
[2025-10-13 15:11:05]  *** Listing of results directory ***
[2025-10-13 15:11:05] total 405272
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc    557409 Oct 10 09:47 pilot3.tar.gz
[2025-10-13 15:11:05] -rwx------ 1 boinc boinc     36292 Oct 10 09:54 runpilot2-wrapper.sh
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc      5112 Oct 10 09:54 queuedata.json
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:11:05] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:02 run_atlas
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:02 job.xml
[2025-10-13 15:11:05] -rw-r--r-- 2 boinc boinc 219285544 Oct 13 14:02 EVNT.46676267._001418.pool.root.1
[2025-10-13 15:11:05] -rw-r--r-- 2 boinc boinc    569673 Oct 13 14:02 input.tar.gz
[2025-10-13 15:11:05] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:02 start_atlas.sh
[2025-10-13 15:11:05] drwxrwx--x 2 boinc boinc      4096 Oct 13 14:02 shared
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:02 boinc_setup_complete
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc      6368 Oct 13 14:02 init_data.xml
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:02 boinc_lockfile
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc      2549 Oct 13 14:02 pandaJob.out
[2025-10-13 15:11:05] -rw------- 1 boinc boinc    972497 Oct 13 14:02 agis_schedconf.cvmfs.json
[2025-10-13 15:11:05] -rw------- 1 boinc boinc   1560580 Oct 13 14:02 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:11:05] drwx------ 5 boinc boinc      4096 Oct 13 14:02 pilot3
[2025-10-13 15:11:05] -rw------- 1 boinc boinc        95 Oct 13 15:10 pilot_heartbeat.json
[2025-10-13 15:11:05] -rw------- 1 boinc boinc 190080898 Oct 13 15:10 HITS.46676269._034872.pool.root.1
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc       529 Oct 13 15:10 boinc_task_state.xml
[2025-10-13 15:11:05] -rw------- 1 boinc boinc      1018 Oct 13 15:10 memory_monitor_summary.json
[2025-10-13 15:11:05] -rw------- 1 boinc boinc    262628 Oct 13 15:10 log.46676269._034872.job.log.tgz.1
[2025-10-13 15:11:05] -rw------- 1 boinc boinc      7755 Oct 13 15:10 heartbeat.json
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc      8192 Oct 13 15:10 boinc_mmap_file
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc        27 Oct 13 15:10 wrapper_checkpoint.txt
[2025-10-13 15:11:05] -rw------- 1 boinc boinc       746 Oct 13 15:11 pilotlog.txt
[2025-10-13 15:11:05] -rw------- 1 boinc boinc    606242 Oct 13 15:11 log.46676269._034872.job.log.1
[2025-10-13 15:11:05] -rw------- 1 boinc boinc       357 Oct 13 15:11 output.list
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc       620 Oct 13 15:11 runtime_log
[2025-10-13 15:11:05] -rw------- 1 boinc boinc    890880 Oct 13 15:11 result.tar.gz
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc      8777 Oct 13 15:11 runtime_log.err
[2025-10-13 15:11:05] -rw------- 1 boinc boinc       658 Oct 13 15:11 bEAODmZ8MR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmBXPMDmSsc5qn.diag
[2025-10-13 15:11:05] -rw-r--r-- 1 boinc boinc     10494 Oct 13 15:11 stderr.txt
[2025-10-13 15:11:05] HITS file was successfully produced:
[2025-10-13 15:11:05] -rw------- 1 boinc boinc 190080898 Oct 13 15:10 shared/HITS.pool.root.1
[2025-10-13 15:11:05]  *** Contents of shared directory: ***
[2025-10-13 15:11:05] total 401232
[2025-10-13 15:11:05] -rw-r--r-- 2 boinc boinc 219285544 Oct 13 14:02 ATLAS.root_0
[2025-10-13 15:11:05] -rw-r--r-- 2 boinc boinc    569673 Oct 13 14:02 input.tar.gz
[2025-10-13 15:11:05] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:02 start_atlas.sh
[2025-10-13 15:11:05] -rw------- 1 boinc boinc 190080898 Oct 13 15:10 HITS.pool.root.1
[2025-10-13 15:11:05] -rw------- 1 boinc boinc    890880 Oct 13 15:11 result.tar.gz
15:11:06 (121395): run_atlas exited; CPU time 15256.203256
15:11:06 (121395): called boinc_finish(0)

</stderr_txt>
]]>

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