Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 11:45:53 (69700): vboxwrapper version 26210
2025-10-11 11:45:53 (69700): BOINC client version: 8.2.5
2025-10-11 11:45:53 (69700): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-10-11 11:45:53 (69700): Detected: Sandbox Configuration Enabled
2025-10-11 11:45:53 (69700): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 11:45:53 (69700): Create VM. (boinc_a9feaa2c89fe45ea, slot#1)
2025-10-11 11:45:53 (69700): Setting Memory Size for VM. (4400MB)
2025-10-11 11:45:53 (69700): Setting CPU Count for VM. (4)
2025-10-11 11:45:53 (69700): Setting Chipset Options for VM.
2025-10-11 11:45:53 (69700): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 11:45:53 (69700): Setting Boot Options for VM.
2025-10-11 11:45:54 (69700): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 11:45:54 (69700): Enabling VM Network Access.
2025-10-11 11:45:54 (69700): Disabling USB Support for VM.
2025-10-11 11:45:54 (69700): Disabling COM Port Support for VM.
2025-10-11 11:45:54 (69700): Disabling Audio Support for VM.
2025-10-11 11:45:54 (69700): Disabling Clipboard Support for VM.
2025-10-11 11:45:54 (69700): Disabling Drag and Drop Support for VM.
2025-10-11 11:45:54 (69700): Adding storage controller(s) to VM.
2025-10-11 11:45:54 (69700): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 11:45:55 (69700): Adding VirtualBox Guest Additions to VM.
2025-10-11 11:45:55 (69700): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 11:45:55 (69700): forwarding host port 62495 to guest port 80
2025-10-11 11:45:55 (69700): Enabling remote desktop for VM.
2025-10-11 11:45:55 (69700): Enabling shared directory for VM.
2025-10-11 11:45:55 (69700): Starting VM using VBoxManage interface. (boinc_a9feaa2c89fe45ea, slot#1)
2025-10-11 11:46:01 (69700): Successfully started VM. (PID = '69781')
2025-10-11 11:46:01 (69700): Reporting VM Process ID to BOINC.
2025-10-11 11:46:01 (69700): Guest Log: BIOS: VirtualBox 7.0.22
2025-10-11 11:46:01 (69700): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 11:46:01 (69700): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 11:46:01 (69700): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 11:46:01 (69700): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 11:46:01 (69700): Detected: Web Application Enabled (http://localhost:62495)
2025-10-11 11:46:01 (69700): Detected: Remote Desktop Enabled (localhost:62496)
2025-10-11 11:46:01 (69700): Preference change detected
2025-10-11 11:46:01 (69700): Setting CPU throttle for VM. (13%)
2025-10-11 11:46:01 (69700): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 11:46:03 (69700): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 11:46:03 (69700): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 11:46:08 (69700): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 11:46:08 (69700): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 11:46:08 (69700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 11:46:34 (69700): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 11:46:34 (69700): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 11:47:40 (69700): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 11:47:40 (69700): Guest Log: 00:00:00.000151 main     Log opened 2025-10-11T09:47:39.439931000Z
2025-10-11 11:47:40 (69700): Guest Log: 00:00:00.000267 main     OS Product: Linux
2025-10-11 11:47:40 (69700): Guest Log: 00:00:00.000318 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 11:47:40 (69700): Guest Log: 00:00:00.000365 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 11:47:40 (69700): Guest Log: 00:00:00.000412 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 11:47:40 (69700): Guest Log: 00:00:00.000413 main     Process ID: 1335
2025-10-11 11:47:40 (69700): Guest Log: 00:00:00.000414 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 11:47:40 (69700): Guest Log: 00:00:00.002120 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 11:47:41 (69700): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 11:47:41 (69700): Guest Log: [INFO] Mounting shared directory
2025-10-11 11:47:42 (69700): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 11:48:00 (69700): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 11:48:00 (69700): Guest Log: [INFO] Detected branch: prod
2025-10-11 11:48:02 (69700): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 11:48:02 (69700): Guest Log: Copying input files
2025-10-11 11:48:28 (69700): Guest Log: Copied input files into RunAtlas.
2025-10-11 11:48:29 (69700): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 11:48:29 (69700): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 11:48:29 (69700): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 11:48:29 (69700): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 11:48:44 (69700): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 11:48:45 (69700): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 11:48:45 (69700): Guest Log: 2.6.3.0 1613 0 32148 151579 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 11:48:51 (69700): Guest Log: copied the webapp to /var/www
2025-10-11 11:48:52 (69700): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-11 11:48:52 (69700): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-11 11:48:53 (69700): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 11:48:53 (69700): Guest Log:  *** Starting ATLAS job. (PandaID=6837511354 taskID=46676269) ***
2025-10-11 12:22:58 (69700): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 12:23:22 (69700): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 13:26:08 (69700): Status Report: Elapsed Time: '6000.000000'
2025-10-11 13:26:08 (69700): Status Report: CPU Time: '10319.130000'
2025-10-11 14:08:27 (69700): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 14:08:52 (69700): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 14:30:28 (69700): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 15:30:28 (69700): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 15:30:31 (69700): Guest Log: 02:41:47.940419 timesync vgsvcTimeSyncWorker: Radical host time change: 3 603 916 000 000ns (HostNow=1 760 189 378 816 000 000 ns HostLast=1 760 185 774 900 000 000 ns)
2025-10-11 15:30:41 (69700): Guest Log: 02:41:57.945966 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 621 709 188 000ns (GuestNow=1 760 189 388 955 460 000 ns GuestLast=1 760 185 767 246 272 000 ns fSetTimeLastLoop=true )
2025-10-11 16:06:08 (69700): Status Report: Elapsed Time: '12000.000000'
2025-10-11 16:06:08 (69700): Status Report: CPU Time: '25707.280000'
2025-10-11 17:16:46 (69700): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 17:17:07 (69700): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 17:41:39 (69700): Guest Log:  *** Job finished ***
2025-10-11 17:41:39 (69700): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:39:48,449 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:03,365 | INFO     | [monitor] cgroup control has ended
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:03,851 [wrapper] supervise_pilot (15 min periods counter: 20)
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:05,259 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140516648294208)>', '<ExcThread(monitor, started 140516213643008)>']
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:05,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:05,595 | INFO     | [monitor] control thread has ended
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:10,266 | INFO     | all workflow threads have been joined
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:10,266 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:10,267 | INFO     | traces error code: 0
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:10,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:10,696 [wrapper] ==== pilot stdout END ====
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:10,782 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:10,790 [wrapper] pilotpid: 6068
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:10,797 [wrapper] Pilot exit status: 0
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:11,539 [wrapper] pandaids: 6837511354
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:11,958 [wrapper] cleanup supervisor_pilot 16482 6069
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:12,052 [wrapper] Test setup, not cleaning
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:12,057 [wrapper] apfmon messages muted
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:12,152 [wrapper] ==== wrapper stdout END ====
2025-10-11 17:41:40 (69700): Guest Log: 2025-10-11 15:40:12,157 [wrapper] ==== wrapper stderr END ====
2025-10-11 17:41:40 (69700): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 17:41:40 (69700): Guest Log:     "exeErrorCode": 0,
2025-10-11 17:41:40 (69700): Guest Log:     "exeErrorDiag": "",
2025-10-11 17:41:40 (69700): Guest Log:     "pilotErrorCode": 0,
2025-10-11 17:41:40 (69700): Guest Log:     "pilotErrorDiag": "",
2025-10-11 17:41:40 (69700): Guest Log:  *** Listing of results directory ***
2025-10-11 17:41:41 (69700): Guest Log: total 201396
2025-10-11 17:41:41 (69700): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 08:04 pilot3.tar.gz
2025-10-11 17:41:41 (69700): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 08:28 runpilot2-wrapper.sh
2025-10-11 17:41:41 (69700): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 08:28 queuedata.json
2025-10-11 17:41:41 (69700): Guest Log: -rw-r-----. 1 atlas atlas     15120 Oct 11 09:48 start_atlas.sh
2025-10-11 17:41:41 (69700): Guest Log: -rw-r-----. 1 atlas atlas    569678 Oct 11 09:48 input.tar.gz
2025-10-11 17:41:41 (69700): Guest Log: -rw-r--r--. 1 atlas atlas      8244 Oct 11 09:48 init_data.xml
2025-10-11 17:41:41 (69700): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 09:48 EVNT.46676267._001436.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 17:41:41 (69700): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 09:48 pandaJob.out
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas    975525 Oct 11 09:53 agis_schedconf.cvmfs.json
2025-10-11 17:41:41 (69700): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 09:53 pilot3
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas 198156733 Oct 11 15:34 HITS.46676269._035317.pool.root.1
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas      1033 Oct 11 15:36 memory_monitor_summary.json
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 15:36 agis_ddmendpoints.agis.ALL.json
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas    387868 Oct 11 15:36 log.46676269._035317.job.log.tgz.1
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas        97 Oct 11 15:38 pilot_heartbeat.json
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas      7826 Oct 11 15:39 heartbeat.json
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas      4991 Oct 11 15:40 pilotlog.txt
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas   1728067 Oct 11 15:40 log.46676269._035317.job.log.1
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 15:40 output.list
2025-10-11 17:41:41 (69700): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 15:40 runtime_log
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas   2140160 Oct 11 15:40 result.tar.gz
2025-10-11 17:41:41 (69700): Guest Log: -rw-------. 1 atlas atlas       676 Oct 11 15:40 zqyLDmWfNR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrocNDm6tK7Xn.diag
2025-10-11 17:41:41 (69700): Guest Log: -rw-r--r--. 1 atlas atlas      8691 Oct 11 15:40 runtime_log.err
2025-10-11 17:41:41 (69700): Guest Log: Looking for outputfile HITS.46676269._035317.pool.root.1
2025-10-11 17:41:42 (69700): Guest Log: HITS file was successfully produced
2025-10-11 17:41:42 (69700): Guest Log: -rw-------. 1 atlas atlas 198156733 Oct 11 15:34 /home/atlas/RunAtlas/HITS.46676269._035317.pool.root.1
2025-10-11 17:41:43 (69700): Guest Log: Successfully finished the ATLAS job!
2025-10-11 17:41:43 (69700): Guest Log: Copying the results back to the shared directory!
2025-10-11 17:41:44 (69700): Guest Log:  *** Contents of shared directory: ***
2025-10-11 17:41:44 (69700): Guest Log: total 219592
2025-10-11 17:41:44 (69700): Guest Log: -rw-rw----. 1 root root 222113958 Oct 11 09:45 ATLAS.root_0
2025-10-11 17:41:44 (69700): Guest Log: -rw-rw-r--. 1 root root      8244 Oct 11 09:45 init_data.xml
2025-10-11 17:41:44 (69700): Guest Log: -rw-rw----. 1 root root    569678 Oct 11 09:45 input.tar.gz
2025-10-11 17:41:44 (69700): Guest Log: -rw-r--r--. 1 root root   2140160 Oct 11  2025 result.tar.gz
2025-10-11 17:41:44 (69700): Guest Log: -rw-rw----. 1 root root     15120 Oct 11 09:45 start_atlas.sh
2025-10-11 17:41:44 (69700): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 17:41:45 (69700): VM Completion File Detected.
2025-10-11 17:41:45 (69700): Powering off VM.
2025-10-11 17:41:45 (69700): Successfully stopped VM.
2025-10-11 17:41:45 (69700): Deregistering VM. (boinc_a9feaa2c89fe45ea, slot#1)
2025-10-11 17:41:45 (69700): Removing network bandwidth throttle group from VM.
2025-10-11 17:41:46 (69700): Removing VM from VirtualBox.
2025-10-11 17:41:51 (69700): called boinc_finish(0)

</stderr_txt>
]]>

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