Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:21:08 (481193): wrapper (7.7.26015): starting
07:21:08 (481193): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 07:21:08] Arguments: --nthreads 12
[2025-10-10 07:21:08] Threads: 12
[2025-10-10 07:21:08] Checking for CVMFS
[2025-10-10 07:21:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 07:21:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 07:21:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 07:21:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 07:21:10] 2.11.5.0 2120 27152 209904 151548 3 254 42033042 45568000 22809 130560 0 285875004 99.874 117880741 18184 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-10 07:21:10] CVMFS is ok
[2025-10-10 07:21:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 07:21:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 07:21:10] Further information can be found at the LHC@home message board.
[2025-10-10 07:21:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 07:21:10] Checking for apptainer binary...
[2025-10-10 07:21:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 07:21:10] Running /usr/bin/apptainer --version
[2025-10-10 07:21:10] apptainer version 1.4.1-1.el9
[2025-10-10 07:21:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 07:21:10] wns0078.triumf.lcg
[2025-10-10 07:21:10] apptainer works
[2025-10-10 07:21:10] Set ATHENA_PROC_NUMBER=12
[2025-10-10 07:21:10] Set ATHENA_CORE_NUMBER=12
[2025-10-10 07:21:10] Starting ATLAS job with PandaID=6837597322
[2025-10-10 07:21:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 07:27:07]  *** The last 200 lines of the pilot log: ***
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | WARNING  | wrong length of table data, x=[1760106217.0], y=[1025.0] (must be same and length>=4)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | could have reported an average CPU frequency of 2565 MHz (4 samples)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | ..............................
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . Timing measurements:
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . get job = 0 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . initial setup = 3 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . payload setup = 32 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . stage-in = 0 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . payload execution = 64 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . stage-out = 1 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . log creation = 0 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | ..............................
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837597322/pilotlog.txt
[2025-10-10 07:27:07] 2025-10-10 14:26:31,349 | INFO     | time since job start (287s) is within the limit (172800.0s)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,416 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 07:27:07] - Log from pilotlog.txt -
[2025-10-10 07:27:07] 2025-10-10 14:26:31,318 | INFO     | extracted standard info from prmon json
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | WARNING  | wrong length of table data, x=[1760106217.0], y=[1025.0] (must be same and length>=4)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | could have reported an average CPU frequency of 2565 MHz (4 samples)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | ..............................
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . Timing measurements:
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . get job = 0 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . initial setup = 3 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . payload setup = 32 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . stage-in = 0 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . payload execution = 64 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . stage-out = 1 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . log creation = 0 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | ..............................
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837597322/pilotlog.txt
[2025-10-10 07:27:07] 2025-10-10 14:26:31,349 | INFO     | time since job start (287s) is within the limit (172800.0s)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,416 | WARNING  | 
[2025-10-10 07:27:07] [begin log extracts]
[2025-10-10 07:27:07] - Log from pilotlog.txt -
[2025-10-10 07:27:07] 2025-10-10 14:26:31,318 | INFO     | extracted standard info from prmon json
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 07:27:07] 2025-10-10 14:26:31,319 | WARNING  | wrong length of table data, x=[1760106217.0], y=[1025.0] (must be same and length>=4)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | could have reported an average CPU frequency of 2565 MHz (4 samples)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | ..............................
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . Timing measurements:
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . get job = 0 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . initial setup = 3 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . payload setup = 32 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . stage-in = 0 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . payload execution = 64 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . stage-out = 1 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | . log creation = 0 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | ..............................
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 07:27:07] 2025-10-10 14:26:31,320 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837597322/pilotlog.txt
[2025-10-10 07:27:07] 2025-10-10 14:26:31,349 | INFO     | time since job start (287s) is within the limit (172800.0s)
[2025-10-10 07:27:07] [end log extracts]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,416 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,417 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-10 07:27:07] 2025-10-10 14:26:31,641 | INFO     | 
[2025-10-10 07:27:07] 2025-10-10 14:26:31,641 | INFO     | job summary report
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | --------------------------------------------------
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | PanDA job id: 6837597322
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | task id: 46676269
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 07:23:59,693 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | pilot state: failed 
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | transexitcode: 65
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | exeerrorcode: 65
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | exitcode: 65
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | cpuconsumptiontime: 19 s
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | nevents: 0
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | neventsw: 0
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | pid: 497758
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | pgrp: 497758
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | corecount: 12
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | event service: False
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | sizes: {0: 2348682, 1: 2348881, 12: 2348881, 18: 2349171, 23: 2349199, 101: 2372532, 104: 2376824, 107: 2376852, 243: 2377018}
[2025-10-10 07:27:07] 2025-10-10 14:26:31,642 | INFO     | --------------------------------------------------
[2025-10-10 07:27:07] 2025-10-10 14:26:31,643 | INFO     | 
[2025-10-10 07:27:07] 2025-10-10 14:26:31,643 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | job 6837597322 has completed (purged errors)
[2025-10-10 07:27:07] 2025-10-10 14:26:31,680 | INFO     | overall cleanup function is called
[2025-10-10 07:27:07] 2025-10-10 14:26:32,686 | INFO     | --- collectZombieJob: --- 10, [497758]
[2025-10-10 07:27:07] 2025-10-10 14:26:32,687 | INFO     | zombie collector waiting for pid 497758
[2025-10-10 07:27:07] 2025-10-10 14:26:32,687 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 07:27:07] 2025-10-10 14:26:32,687 | INFO     | collected zombie processes
[2025-10-10 07:27:07] 2025-10-10 14:26:32,687 | INFO     | will attempt to kill all subprocesses of pid=497758
[2025-10-10 07:27:07] 2025-10-10 14:26:33,408 | INFO     | process IDs to be killed: [497758] (in reverse order)
[2025-10-10 07:27:07] 2025-10-10 14:26:33,486 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 07:27:07] 2025-10-10 14:26:33,486 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 07:27:07] 2025-10-10 14:26:33,513 | INFO     | did not find any defunct processes belonging to 497758
[2025-10-10 07:27:07] 2025-10-10 14:26:33,571 | INFO     | did not find any defunct processes belonging to 497758
[2025-10-10 07:27:07] 2025-10-10 14:26:33,571 | INFO     | ready for new job
[2025-10-10 07:27:07] 2025-10-10 14:26:33,571 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 07:27:07] 2025-10-10 14:26:33,572 | INFO     | ***************************************
[2025-10-10 07:27:07] 2025-10-10 14:26:33,572 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 07:27:07] 2025-10-10 14:26:33,573 | INFO     | ***************************************
[2025-10-10 07:27:07] 2025-10-10 14:26:33,573 | INFO     | 
[2025-10-10 07:27:07] 2025-10-10 14:26:33,594 | INFO     | architecture information:
[2025-10-10 07:27:07] 2025-10-10 14:26:33,598 | INFO     | executing command: cat /etc/os-release
[2025-10-10 07:27:07] 2025-10-10 14:26:33,636 | INFO     | cat /etc/os-release:
[2025-10-10 07:27:07] NAME="CentOS Linux"
[2025-10-10 07:27:07] VERSION="7 (Core)"
[2025-10-10 07:27:07] ID="centos"
[2025-10-10 07:27:07] ID_LIKE="rhel fedora"
[2025-10-10 07:27:07] VERSION_ID="7"
[2025-10-10 07:27:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 07:27:07] ANSI_COLOR="0;31"
[2025-10-10 07:27:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 07:27:07] HOME_URL="https://www.centos.org/"
[2025-10-10 07:27:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 07:27:07] 
[2025-10-10 07:27:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 07:27:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 07:27:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 07:27:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 07:27:07] 
[2025-10-10 07:27:07] 2025-10-10 14:26:33,636 | INFO     | ***************************************
[2025-10-10 07:27:07] 2025-10-10 14:26:34,140 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-10 07:27:07] 2025-10-10 14:26:34,208 | INFO     | sufficient remaining disk space (1612593496064 B)
[2025-10-10 07:27:07] 2025-10-10 14:26:34,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 07:27:07] 2025-10-10 14:26:34,208 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 07:27:07] 2025-10-10 14:26:34,208 | INFO     | update_server=False
[2025-10-10 07:27:07] 2025-10-10 14:26:34,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 07:27:07] 2025-10-10 14:26:34,209 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 07:27:07] 2025-10-10 14:26:34,210 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 07:27:07] 2025-10-10 14:26:34,211 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 07:27:07] 2025-10-10 14:26:34,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 07:27:07] 2025-10-10 14:26:34,211 | INFO     | will abort loop
[2025-10-10 07:27:07] 2025-10-10 14:26:34,620 | INFO     | all job control threads have been joined
[2025-10-10 07:27:07] 2025-10-10 14:26:34,702 | INFO     | all data control threads have been joined
[2025-10-10 07:27:07] 2025-10-10 14:26:34,838 | INFO     | all payload control threads have been joined
[2025-10-10 07:27:07] 2025-10-10 14:26:35,215 | INFO     | [job] retrieve thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:35,217 | INFO     | [job] job monitor thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:35,220 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:35,492 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:35,626 | INFO     | [job] control thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:35,708 | INFO     | [data] control thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:35,844 | INFO     | [payload] control thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:35,975 | INFO     | [job] validate thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:36,062 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:36,214 | INFO     | [payload] validate_post thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:36,217 | INFO     | [data] copytool_out thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:36,222 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:36,363 | INFO     | [payload] failed_post thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:36,371 | INFO     | [data] copytool_in thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:36,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 07:27:07] 2025-10-10 14:26:37,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 07:27:07] 2025-10-10 14:26:37,679 | INFO     | [job] queue monitor thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:41,434 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 07:27:07] 2025-10-10 14:26:44,684 | INFO     | [monitor] cgroup control has ended
[2025-10-10 07:27:07] 2025-10-10 14:26:46,750 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398949427008)>', '<ExcThread(monitor, started 140398538233600)>']
[2025-10-10 07:27:07] 2025-10-10 14:26:51,776 | INFO     | all workflow threads have been joined
[2025-10-10 07:27:07] 2025-10-10 14:26:51,777 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 07:27:07] 2025-10-10 14:26:51,777 | INFO     | traces error code: 0
[2025-10-10 07:27:07] 2025-10-10 14:26:51,777 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 07:27:07] 2025-10-10 14:27:05,514 | INFO     | PID=490334 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 07:27:07] 2025-10-10 14:27:05,514 | INFO     | .. there are 35 such processes running
[2025-10-10 07:27:07] 2025-10-10 14:27:05,515 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 07:27:07] 2025-10-10 14:27:05,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 07:27:07] 2025-10-10 14:27:05,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 07:27:07] 2025-10-10 14:27:05,515 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 07:27:07] 2025-10-10 14:27:05,515 | INFO     | [monitor] control thread has ended
[2025-10-10 07:27:07] 2025-10-10 14:27:05,832 [wrapper] ==== pilot stdout END ====
[2025-10-10 07:27:07] 2025-10-10 14:27:05,847 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 07:27:07] 2025-10-10 14:27:05,857 [wrapper] pilotpid: 490334
[2025-10-10 07:27:07] 2025-10-10 14:27:05,866 [wrapper] Pilot exit status: 0
[2025-10-10 07:27:07] 2025-10-10 14:27:06,007 [wrapper] pandaids: 6837597322
[2025-10-10 07:27:07] 2025-10-10 14:27:06,574 [wrapper] cleanup supervisor_pilot  490340 490335
[2025-10-10 07:27:07] 2025-10-10 14:27:06,600 [wrapper] Test setup, not cleaning
[2025-10-10 07:27:07] 2025-10-10 14:27:06,649 [wrapper] apfmon messages muted
[2025-10-10 07:27:07] 2025-10-10 14:27:06,684 [wrapper] ==== wrapper stdout END ====
[2025-10-10 07:27:07] 2025-10-10 14:27:06,696 [wrapper] ==== wrapper stderr END ====
[2025-10-10 07:27:07]  *** Error codes and diagnostics ***
[2025-10-10 07:27:07]     "exeErrorCode": 65,
[2025-10-10 07:27:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 07:27:07]     "pilotErrorCode": 1305,
[2025-10-10 07:27:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 07:27:07]  *** Listing of results directory ***
[2025-10-10 07:27:07] total 218788
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc    557409 Oct 10 04:21 pilot3.tar.gz
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc      5112 Oct 10 04:22 queuedata.json
[2025-10-10 07:27:07] -rwx------. 1 boinc boinc     36292 Oct 10 04:23 runpilot2-wrapper.sh
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc       100 Oct 10 07:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 07:27:07] -rwxr-xr-x. 1 boinc boinc      7986 Oct 10 07:21 run_atlas
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc       105 Oct 10 07:21 job.xml
[2025-10-10 07:27:07] -rw-r--r--. 2 boinc boinc 219906074 Oct 10 07:21 EVNT.46676267._001526.pool.root.1
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc      6593 Oct 10 07:21 init_data.xml
[2025-10-10 07:27:07] drwxrwx--x. 2 boinc boinc      4096 Oct 10 07:21 shared
[2025-10-10 07:27:07] -rw-r--r--. 2 boinc boinc    569680 Oct 10 07:21 input.tar.gz
[2025-10-10 07:27:07] -rw-r--r--. 2 boinc boinc     15120 Oct 10 07:21 start_atlas.sh
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc         0 Oct 10 07:21 boinc_lockfile
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc      2549 Oct 10 07:21 pandaJob.out
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc    975525 Oct 10 07:21 agis_schedconf.cvmfs.json
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc   1560580 Oct 10 07:21 agis_ddmendpoints.agis.ALL.json
[2025-10-10 07:27:07] drwx------. 5 boinc boinc      4096 Oct 10 07:21 pilot3
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc       965 Oct 10 07:24 memory_monitor_summary.json
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc     22280 Oct 10 07:24 log.46676269._037576.job.log.tgz.1
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc      8404 Oct 10 07:26 heartbeat.json
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc        22 Oct 10 07:27 wrapper_checkpoint.txt
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc       822 Oct 10 07:27 pilotlog.txt
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc        95 Oct 10 07:27 pilot_heartbeat.json
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc      8192 Oct 10 07:27 boinc_mmap_file
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc       523 Oct 10 07:27 boinc_task_state.xml
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc     95371 Oct 10 07:27 log.46676269._037576.job.log.1
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc       188 Oct 10 07:27 output.list
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc       620 Oct 10 07:27 runtime_log
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc    133120 Oct 10 07:27 result.tar.gz
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc       644 Oct 10 07:27 WrzNDm7OQR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmlqPMDmYCmh6n.diag
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc      8528 Oct 10 07:27 runtime_log.err
[2025-10-10 07:27:07] -rw-r--r--. 1 boinc boinc     21763 Oct 10 07:27 stderr.txt
[2025-10-10 07:27:07] No HITS result produced
[2025-10-10 07:27:07]  *** Contents of shared directory: ***
[2025-10-10 07:27:07] total 215464
[2025-10-10 07:27:07] -rw-r--r--. 2 boinc boinc 219906074 Oct 10 07:21 ATLAS.root_0
[2025-10-10 07:27:07] -rw-r--r--. 2 boinc boinc    569680 Oct 10 07:21 input.tar.gz
[2025-10-10 07:27:07] -rw-r--r--. 2 boinc boinc     15120 Oct 10 07:21 start_atlas.sh
[2025-10-10 07:27:07] -rw-------. 1 boinc boinc    133120 Oct 10 07:27 result.tar.gz
07:27:09 (481193): run_atlas exited; CPU time 31.485061
07:27:09 (481193): called boinc_finish(0)

</stderr_txt>
]]>

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