Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:38:03 (1207427): wrapper (7.7.26015): starting
09:38:03 (1207427): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 09:38:03] Arguments: --nthreads 8
[2025-10-10 09:38:03] Threads: 8
[2025-10-10 09:38:03] Checking for CVMFS
[2025-10-10 09:38:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 09:38:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 09:38:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 09:38:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 09:38:03] 2.13.2.0 1187368 121024 288780 151547 0 682 36217032 40960001 25899 16776704 0 331875474 99.674 290609296 34025 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 09:38:03] CVMFS is ok
[2025-10-10 09:38:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 09:38:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 09:38:03] Further information can be found at the LHC@home message board.
[2025-10-10 09:38:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 09:38:03] Checking for apptainer binary...
[2025-10-10 09:38:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 09:38:03] Running /usr/bin/apptainer --version
[2025-10-10 09:38:03] apptainer version 1.4.3-1.el9
[2025-10-10 09:38:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 09:38:04] c-212-19.aglt2.org
[2025-10-10 09:38:04] apptainer works
[2025-10-10 09:38:04] Set ATHENA_PROC_NUMBER=8
[2025-10-10 09:38:04] Set ATHENA_CORE_NUMBER=8
[2025-10-10 09:38:04] Starting ATLAS job with PandaID=6837400813
[2025-10-10 09:38:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 10:55:54]  *** The last 200 lines of the pilot log: ***
[2025-10-10 10:55:54]  storage_token=
[2025-10-10 10:55:54]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6837400813/log.46676269._032070.job.log.tgz.1
[2025-10-10 10:55:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/91/log.46676269._032070.job.log.tgz.1
[2025-10-10 10:55:54]  workdir=None
[2025-10-10 10:55:54] ]
[2025-10-10 10:55:54] 2025-10-10 14:55:12,641 | INFO     | transferring file log.46676269._032070.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6837400813/log.46676269._032070.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 10:55:54] 2025-10-10 14:55:12,641 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6837400813/log.46676269._032070.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._032070.job
[2025-10-10 10:55:54] 2025-10-10 14:55:12,662 | INFO     | adding to output.list: log.46676269._032070.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/91/log.46676269._032070.job.log.tg
[2025-10-10 10:55:54] 2025-10-10 14:55:12,662 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 10:55:54] 2025-10-10 14:55:12,662 | INFO     | summary of transferred files:
[2025-10-10 10:55:54] 2025-10-10 14:55:12,662 | INFO     |  -- lfn=log.46676269._032070.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 10:55:54] 2025-10-10 14:55:12,663 | INFO     | stage-out finished correctly
[2025-10-10 10:55:54] 2025-10-10 14:55:12,820 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 10:55:54] 2025-10-10 14:55:12,856 | INFO     | monitor loop #330: job 0:6837400813 is in state 'finished'
[2025-10-10 10:55:54] 2025-10-10 14:55:12,867 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 10:55:54] 2025-10-10 14:55:13,729 | INFO     | job 6837400813 has state=finished
[2025-10-10 10:55:54] 2025-10-10 14:55:13,729 | INFO     | preparing for final server update for job 6837400813 in state='finished'
[2025-10-10 10:55:54] 2025-10-10 14:55:13,794 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-10 10:55:54] 2025-10-10 14:55:13,794 | INFO     | this job has now completed (state=finished)
[2025-10-10 10:55:54] 2025-10-10 14:55:13,794 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 10:55:54] 2025-10-10 14:55:13,794 | INFO     | log transfer has been attempted: DONE
[2025-10-10 10:55:54] 2025-10-10 14:55:13,794 | INFO     | job 6837400813 has finished - writing final server update
[2025-10-10 10:55:54] 2025-10-10 14:55:13,795 | INFO     | total number of processed events: 400 (read)
[2025-10-10 10:55:54] 2025-10-10 14:55:13,795 | INFO     | executing command: lscpu
[2025-10-10 10:55:54] 2025-10-10 14:55:13,869 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 10:55:54] 2025-10-10 14:55:14,388 | INFO     | time since job start (4604s) is within the limit (172800.0s)
[2025-10-10 10:55:54] 2025-10-10 14:55:15,374 | INFO     | monitor loop #331: job 0:6837400813 is in state 'finished'
[2025-10-10 10:55:54] 2025-10-10 14:55:15,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 10:55:54] 2025-10-10 14:55:16,395 | INFO     | time since job start (4606s) is within the limit (172800.0s)
[2025-10-10 10:55:54] 2025-10-10 14:55:17,878 | INFO     | monitor loop #332: job 0:6837400813 is in state 'finished'
[2025-10-10 10:55:54] 2025-10-10 14:55:17,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 10:55:54] 2025-10-10 14:55:18,403 | INFO     | time since job start (4608s) is within the limit (172800.0s)
[2025-10-10 10:55:54] 2025-10-10 14:55:20,344 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 10:55:54] 2025-10-10 14:55:20,357 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3090.495458333334
[2025-10-10 10:55:54] 2025-10-10 14:55:20,371 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6837400813/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 10:55:54] 2025-10-10 14:55:20,372 | INFO     | extracted standard info from prmon json
[2025-10-10 10:55:54] 2025-10-10 14:55:20,372 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 10:55:54] 2025-10-10 14:55:20,372 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 10:55:54] 2025-10-10 14:55:20,373 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 10:55:54] 2025-10-10 14:55:20,373 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 10:55:54] 2025-10-10 14:55:20,374 | INFO     | fitting pss+swap vs Time
[2025-10-10 10:55:54] 2025-10-10 14:55:20,374 | INFO     | sum of square deviations: 97479037.0
[2025-10-10 10:55:54] 2025-10-10 14:55:20,375 | INFO     | sum of deviations: -4107555688.5000005
[2025-10-10 10:55:54] 2025-10-10 14:55:20,375 | INFO     | mean x: 1760105895.5
[2025-10-10 10:55:54] 2025-10-10 14:55:20,375 | INFO     | mean y: 2544838.338235294
[2025-10-10 10:55:54] 2025-10-10 14:55:20,375 | INFO     | -- intersect: 74169598657.54465
[2025-10-10 10:55:54] 2025-10-10 14:55:20,375 | INFO     | intersect: 74169598657.54465
[2025-10-10 10:55:54] 2025-10-10 14:55:20,375 | INFO     | chi2: 0.04296848310927113
[2025-10-10 10:55:54] 2025-10-10 14:55:20,375 | INFO     | -- intersect: 74169598657.54465
[2025-10-10 10:55:54] 2025-10-10 14:55:20,375 | INFO     | current memory leak: -42.14 B/s (using 68 data points, chi2=0.04)
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | could have reported an average CPU frequency of 3123 MHz (6 samples)
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | ..............................
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | . Timing measurements:
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | . get job = 0 s
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | . initial setup = 4 s
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | . payload setup = 10 s
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | . stage-in = 0 s
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | . payload execution = 4568 s
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | . stage-out = 0 s
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | . log creation = 0 s
[2025-10-10 10:55:54] 2025-10-10 14:55:20,376 | INFO     | ..............................
[2025-10-10 10:55:54] 2025-10-10 14:55:20,417 | INFO     | time since job start (4610s) is within the limit (172800.0s)
[2025-10-10 10:55:54] 2025-10-10 14:55:20,476 | INFO     | 
[2025-10-10 10:55:54] 2025-10-10 14:55:20,485 | INFO     | job summary report
[2025-10-10 10:55:54] 2025-10-10 14:55:20,485 | INFO     | --------------------------------------------------
[2025-10-10 10:55:54] 2025-10-10 14:55:20,485 | INFO     | PanDA job id: 6837400813
[2025-10-10 10:55:54] 2025-10-10 14:55:20,485 | INFO     | task id: 46676269
[2025-10-10 10:55:54] 2025-10-10 14:55:20,485 | INFO     | errors: (none)
[2025-10-10 10:55:54] 2025-10-10 14:55:20,485 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 10:55:54] 2025-10-10 14:55:20,485 | INFO     | pilot state: finished 
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | transexitcode: 0
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | exeerrorcode: 0
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | exeerrordiag: 
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | exitcode: 0
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | exitmsg: OK
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | cpuconsumptiontime: 30995 s
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | nevents: 400
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | neventsw: 0
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | pid: 1217640
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | pgrp: 1217640
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | corecount: 8
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | event service: False
[2025-10-10 10:55:54] 2025-10-10 14:55:20,486 | INFO     | sizes: {0: 2348686, 1: 2348885, 8: 2349147, 11: 2349175, 4583: 2375231, 4584: 2384413, 4591: 2384551}
[2025-10-10 10:55:54] 2025-10-10 14:55:20,487 | INFO     | --------------------------------------------------
[2025-10-10 10:55:54] 2025-10-10 14:55:20,487 | INFO     | 
[2025-10-10 10:55:54] 2025-10-10 14:55:20,487 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-10 10:55:54] 2025-10-10 14:55:20,534 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,535 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,536 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,536 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,536 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,536 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,537 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,537 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,537 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,537 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,537 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,537 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,537 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,537 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,537 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,538 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,538 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,538 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 10:55:54] 2025-10-10 14:55:20,538 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,538 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 10:55:54] 2025-10-10 14:55:20,538 | INFO     | job 6837400813 has completed (purged errors)
[2025-10-10 10:55:54] 2025-10-10 14:55:20,538 | INFO     | overall cleanup function is called
[2025-10-10 10:55:54] 2025-10-10 14:55:21,548 | INFO     | --- collectZombieJob: --- 10, [1217640]
[2025-10-10 10:55:54] 2025-10-10 14:55:21,548 | INFO     | zombie collector waiting for pid 1217640
[2025-10-10 10:55:54] 2025-10-10 14:55:21,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 10:55:54] 2025-10-10 14:55:21,548 | INFO     | collected zombie processes
[2025-10-10 10:55:54] 2025-10-10 14:55:21,548 | INFO     | will attempt to kill all subprocesses of pid=1217640
[2025-10-10 10:55:54] 2025-10-10 14:55:22,008 | INFO     | process IDs to be killed: [1217640] (in reverse order)
[2025-10-10 10:55:54] 2025-10-10 14:55:22,165 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 10:55:54] 2025-10-10 14:55:22,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 10:55:54] 2025-10-10 14:55:22,190 | INFO     | did not find any defunct processes belonging to 1217640
[2025-10-10 10:55:54] 2025-10-10 14:55:22,214 | INFO     | did not find any defunct processes belonging to 1217640
[2025-10-10 10:55:54] 2025-10-10 14:55:22,214 | INFO     | ready for new job
[2025-10-10 10:55:54] 2025-10-10 14:55:22,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 10:55:54] 2025-10-10 14:55:22,216 | INFO     | ***************************************
[2025-10-10 10:55:54] 2025-10-10 14:55:22,216 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 10:55:54] 2025-10-10 14:55:22,216 | INFO     | ***************************************
[2025-10-10 10:55:54] 2025-10-10 14:55:22,216 | INFO     | 
[2025-10-10 10:55:54] 2025-10-10 14:55:22,219 | INFO     | architecture information:
[2025-10-10 10:55:54] 2025-10-10 14:55:22,219 | INFO     | executing command: cat /etc/os-release
[2025-10-10 10:55:54] 2025-10-10 14:55:22,231 | INFO     | cat /etc/os-release:
[2025-10-10 10:55:54] NAME="CentOS Linux"
[2025-10-10 10:55:54] VERSION="7 (Core)"
[2025-10-10 10:55:54] ID="centos"
[2025-10-10 10:55:54] ID_LIKE="rhel fedora"
[2025-10-10 10:55:54] VERSION_ID="7"
[2025-10-10 10:55:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 10:55:54] ANSI_COLOR="0;31"
[2025-10-10 10:55:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 10:55:54] HOME_URL="https://www.centos.org/"
[2025-10-10 10:55:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 10:55:54] 
[2025-10-10 10:55:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 10:55:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 10:55:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 10:55:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 10:55:54] 
[2025-10-10 10:55:54] 2025-10-10 14:55:22,231 | INFO     | ***************************************
[2025-10-10 10:55:54] 2025-10-10 14:55:22,735 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-10 10:55:54] 2025-10-10 14:55:22,761 | INFO     | sufficient remaining disk space (127449169920 B)
[2025-10-10 10:55:54] 2025-10-10 14:55:22,762 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 10:55:54] 2025-10-10 14:55:22,762 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 10:55:54] 2025-10-10 14:55:22,762 | INFO     | update_server=False
[2025-10-10 10:55:54] 2025-10-10 14:55:22,762 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 10:55:54] 2025-10-10 14:55:22,901 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 10:55:54] 2025-10-10 14:55:22,904 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 10:55:54] 2025-10-10 14:55:22,904 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:55:54] 2025-10-10 14:55:22,904 | INFO     | will abort loop
[2025-10-10 10:55:54] 2025-10-10 14:55:23,271 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 10:55:54] 2025-10-10 14:55:23,350 | INFO     | all payload control threads have been joined
[2025-10-10 10:55:54] 2025-10-10 14:55:23,386 | INFO     | all data control threads have been joined
[2025-10-10 10:55:54] 2025-10-10 14:55:23,441 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 10:55:54] 2025-10-10 14:55:23,767 | INFO     | [job] retrieve thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:23,910 | INFO     | [job] job monitor thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:23,950 | INFO     | all job control threads have been joined
[2025-10-10 10:55:54] 2025-10-10 14:55:24,072 | INFO     | [payload] validate_post thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:24,182 | INFO     | [data] copytool_in thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:24,235 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:24,356 | INFO     | [payload] control thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:24,392 | INFO     | [data] control thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:24,732 | INFO     | [job] validate thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:24,802 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:24,865 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:24,956 | INFO     | [job] control thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:25,115 | INFO     | [payload] failed_post thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:25,278 | INFO     | [data] copytool_out thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:25,493 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:55:54] 2025-10-10 14:55:26,504 | INFO     | [job] queue monitor thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:27,448 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:33,621 | INFO     | job.realtimelogging is not enabled
[2025-10-10 10:55:54] 2025-10-10 14:55:34,628 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 10:55:54] 2025-10-10 14:55:38,148 | INFO     | [monitor] cgroup control has ended
[2025-10-10 10:55:54] 2025-10-10 14:55:39,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140057659762496)>', '<ExcThread(monitor, started 140057314838272)>']
[2025-10-10 10:55:54] 2025-10-10 14:55:44,964 | INFO     | all workflow threads have been joined
[2025-10-10 10:55:54] 2025-10-10 14:55:44,964 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 10:55:54] 2025-10-10 14:55:44,964 | INFO     | traces error code: 0
[2025-10-10 10:55:54] 2025-10-10 14:55:44,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 10:55:54] 2025-10-10 14:55:53,985 | INFO     | PID=1211206 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 10:55:54] 2025-10-10 14:55:53,986 | INFO     | .. there are 30 such processes running
[2025-10-10 10:55:54] 2025-10-10 14:55:53,987 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 10:55:54] 2025-10-10 14:55:53,994 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 10:55:54] 2025-10-10 14:55:53,994 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 10:55:54] 2025-10-10 14:55:53,994 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 10:55:54] 2025-10-10 14:55:53,994 | INFO     | [monitor] control thread has ended
[2025-10-10 10:55:54] 2025-10-10 14:55:54,100 [wrapper] ==== pilot stdout END ====
[2025-10-10 10:55:54] 2025-10-10 14:55:54,105 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 10:55:54] 2025-10-10 14:55:54,107 [wrapper] pilotpid: 1211206
[2025-10-10 10:55:54] 2025-10-10 14:55:54,109 [wrapper] Pilot exit status: 0
[2025-10-10 10:55:54] 2025-10-10 14:55:54,148 [wrapper] pandaids: 6837400813
[2025-10-10 10:55:54] 2025-10-10 14:55:54,424 [wrapper] cleanup supervisor_pilot 1445046 1211207
[2025-10-10 10:55:54] 2025-10-10 14:55:54,427 [wrapper] Test setup, not cleaning
[2025-10-10 10:55:54] 2025-10-10 14:55:54,429 [wrapper] apfmon messages muted
[2025-10-10 10:55:54] 2025-10-10 14:55:54,431 [wrapper] ==== wrapper stdout END ====
[2025-10-10 10:55:54] 2025-10-10 14:55:54,434 [wrapper] ==== wrapper stderr END ====
[2025-10-10 10:55:54]  *** Error codes and diagnostics ***
[2025-10-10 10:55:54]     "exeErrorCode": 0,
[2025-10-10 10:55:54]     "exeErrorDiag": "",
[2025-10-10 10:55:54]     "pilotErrorCode": 0,
[2025-10-10 10:55:54]     "pilotErrorDiag": "",
[2025-10-10 10:55:54]  *** Listing of results directory ***
[2025-10-10 10:55:54] total 402920
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 00:08 pilot3.tar.gz
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 00:10 queuedata.json
[2025-10-10 10:55:54] -rwx------. 1 boincer umatlas     36292 Oct 10 00:12 runpilot2-wrapper.sh
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas       100 Oct 10 09:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 10:55:54] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 09:38 run_atlas
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas       105 Oct 10 09:38 job.xml
[2025-10-10 10:55:54] -rw-r--r--. 2 boincer umatlas 219605183 Oct 10 09:38 EVNT.46676267._001307.pool.root.1
[2025-10-10 10:55:54] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 09:38 start_atlas.sh
[2025-10-10 10:55:54] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 09:38 shared
[2025-10-10 10:55:54] -rw-r--r--. 2 boincer umatlas    569683 Oct 10 09:38 input.tar.gz
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas         0 Oct 10 09:38 boinc_lockfile
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 09:38 pandaJob.out
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas    975525 Oct 10 09:38 agis_schedconf.cvmfs.json
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas   1560580 Oct 10 09:38 agis_ddmendpoints.agis.ALL.json
[2025-10-10 10:55:54] drwx------. 5 boincer umatlas      4096 Oct 10 09:38 pilot3
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas      6946 Oct 10 10:48 init_data.xml
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas 187113327 Oct 10 10:54 HITS.46676269._032070.pool.root.1
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas       529 Oct 10 10:54 boinc_task_state.xml
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas      1030 Oct 10 10:55 memory_monitor_summary.json
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas    316604 Oct 10 10:55 log.46676269._032070.job.log.tgz.1
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas      7775 Oct 10 10:55 heartbeat.json
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas        95 Oct 10 10:55 pilot_heartbeat.json
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas       823 Oct 10 10:55 pilotlog.txt
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 10:55 boinc_mmap_file
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas        27 Oct 10 10:55 wrapper_checkpoint.txt
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas    669899 Oct 10 10:55 log.46676269._032070.job.log.1
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas       357 Oct 10 10:55 output.list
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas       620 Oct 10 10:55 runtime_log
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas   1003520 Oct 10 10:55 result.tar.gz
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas      8703 Oct 10 10:55 runtime_log.err
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas       652 Oct 10 10:55 AfcLDmkfJR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmRJPMDm62V7mn.diag
[2025-10-10 10:55:54] -rw-r--r--. 1 boincer umatlas     22150 Oct 10 10:55 stderr.txt
[2025-10-10 10:55:54] HITS file was successfully produced:
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas 187113327 Oct 10 10:54 shared/HITS.pool.root.1
[2025-10-10 10:55:54]  *** Contents of shared directory: ***
[2025-10-10 10:55:54] total 398752
[2025-10-10 10:55:54] -rw-r--r--. 2 boincer umatlas 219605183 Oct 10 09:38 ATLAS.root_0
[2025-10-10 10:55:54] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 09:38 start_atlas.sh
[2025-10-10 10:55:54] -rw-r--r--. 2 boincer umatlas    569683 Oct 10 09:38 input.tar.gz
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas 187113327 Oct 10 10:54 HITS.pool.root.1
[2025-10-10 10:55:54] -rw-------. 1 boincer umatlas   1003520 Oct 10 10:55 result.tar.gz
10:55:56 (1207427): run_atlas exited; CPU time 31099.279506
10:55:56 (1207427): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN