Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:24:42 (1295890): wrapper (7.7.26015): starting
06:24:42 (1295890): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 06:24:42] Arguments: --nthreads 4
[2025-10-11 06:24:42] Threads: 4
[2025-10-11 06:24:42] Checking for CVMFS
[2025-10-11 06:24:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 06:24:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 06:24:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 06:24:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 06:24:42] 2.13.2.0 1261730 0 39488 151559 3 186 3427343 6144001 526 130560 0 83390 99.998 1359 544 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-10-11 06:24:42] CVMFS is ok
[2025-10-11 06:24:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 06:24:42] Checking for apptainer binary...
[2025-10-11 06:24:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 06:24:42] Running /usr/bin/apptainer --version
[2025-10-11 06:24:42] apptainer version 1.4.0
[2025-10-11 06:24:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 06:24:42] Zen
[2025-10-11 06:24:42] apptainer works
[2025-10-11 06:24:42] Set ATHENA_PROC_NUMBER=4
[2025-10-11 06:24:42] Set ATHENA_CORE_NUMBER=4
[2025-10-11 06:24:42] Starting ATLAS job with PandaID=6837448898
[2025-10-11 06:24:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 08:07:06]  *** The last 200 lines of the pilot log: ***
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | mean x: 1760127328.5
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | mean y: 2296352.64
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | -- intersect: -23660856386.694828
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | intersect: -23660856386.694828
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | chi2: 2.6146546834588853
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | sum of square deviations: 265828240.0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | sum of deviations: 10179742952.0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | mean x: 1760127176.0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | mean y: 2316215.8736842107
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | -- intersect: -67400764113.40082
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | intersect: -67400764113.40082
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | chi2: 1.8356171380295225
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | current chi2=1.8356171380295225 (change=29.795045225581617 %)
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | sum of square deviations: 226022842.5
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | sum of deviations: 9937331270.000002
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | mean x: 1760127023.5
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | mean y: 2315288.355555556
[2025-10-11 08:07:06] 2025-10-10 21:06:00,155 | INFO     | -- intersect: -77383514906.21239
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | intersect: -77383514906.21239
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | chi2: 1.8402551260226663
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | current chi2=1.8402551260226663 (change=-0.25266641376657 %)
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | right removable region: 89
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | sum of square deviations: 265828240.0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | sum of deviations: -11546062432.000002
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | mean x: 1760127481.0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | mean y: 2349346.3789473684
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | -- intersect: 76452247159.73729
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | intersect: 76452247159.73729
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | chi2: 0.8447347479473009
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | current chi2=0.8447347479473009 (change=67.69230165301161 %)
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | sum of square deviations: 226022842.5
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | sum of deviations: -11070763303.0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | mean x: 1760127633.5
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | mean y: 2347508.9111111113
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | -- intersect: 86214679846.72797
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | intersect: 86214679846.72797
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | chi2: 0.8436109716045299
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | current chi2=0.8436109716045299 (change=0.1330330432720699 %)
[2025-10-11 08:07:06] 2025-10-10 21:06:00,156 | INFO     | left removable region: 20
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | sum of square deviations: 101843770.0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | sum of deviations: -3495081620.000001
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | mean x: 1760127603.0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | mean y: 2370769.8695652173
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | -- intersect: 60406552921.610016
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | intersect: 60406552921.610016
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | chi2: 0.009606639715617727
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | -- intersect: 60406552921.610016
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | current memory leak: -34.32 B/s (using 69 data points, chi2=0.01)
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | could have reported an average CPU frequency of 4296 MHz (7 samples)
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | ..............................
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | . Timing measurements:
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | . get job = 0 s
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | . initial setup = 4 s
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | . payload setup = 2 s
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | . stage-in = 0 s
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | . payload execution = 6048 s
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | . stage-out = 0 s
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | . log creation = 0 s
[2025-10-11 08:07:06] 2025-10-10 21:06:00,157 | INFO     | ..............................
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | 
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | job summary report
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | --------------------------------------------------
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | PanDA job id: 6837448898
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | task id: 46676269
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | errors: (none)
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | pilot state: finished 
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | transexitcode: 0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | exeerrorcode: 0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | exeerrordiag: 
[2025-10-11 08:07:06] 2025-10-10 21:06:00,189 | INFO     | exitcode: 0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | exitmsg: OK
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | cpuconsumptiontime: 23220 s
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | nevents: 400
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | neventsw: 0
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | pid: 1312295
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | pgrp: 1312295
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | corecount: 4
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | event service: False
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | sizes: {0: 2348029, 1: 2348897, 3: 2349159, 11: 2349187, 6054: 2376076, 6055: 2385282, 6057: 2385420}
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | --------------------------------------------------
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | 
[2025-10-11 08:07:06] 2025-10-10 21:06:00,190 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/14
[2025-10-11 08:07:06] 2025-10-10 21:06:00,202 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | job 6837448898 has completed (purged errors)
[2025-10-11 08:07:06] 2025-10-10 21:06:00,203 | INFO     | overall cleanup function is called
[2025-10-11 08:07:06] 2025-10-10 21:06:01,210 | INFO     | --- collectZombieJob: --- 10, [1312295]
[2025-10-11 08:07:06] 2025-10-10 21:06:01,210 | INFO     | zombie collector waiting for pid 1312295
[2025-10-11 08:07:06] 2025-10-10 21:06:01,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 08:07:06] 2025-10-10 21:06:01,210 | INFO     | collected zombie processes
[2025-10-11 08:07:06] 2025-10-10 21:06:01,210 | INFO     | will attempt to kill all subprocesses of pid=1312295
[2025-10-11 08:07:06] 2025-10-10 21:06:01,303 | INFO     | process IDs to be killed: [1312295] (in reverse order)
[2025-10-11 08:07:06] 2025-10-10 21:06:01,335 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 08:07:06] 2025-10-10 21:06:01,335 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 08:07:06] 2025-10-10 21:06:01,337 | INFO     | did not find any defunct processes belonging to 1312295
[2025-10-11 08:07:06] 2025-10-10 21:06:01,339 | INFO     | did not find any defunct processes belonging to 1312295
[2025-10-11 08:07:06] 2025-10-10 21:06:01,339 | INFO     | ready for new job
[2025-10-11 08:07:06] 2025-10-10 21:06:01,339 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 08:07:06] 2025-10-10 21:06:01,340 | INFO     | ***************************************
[2025-10-11 08:07:06] 2025-10-10 21:06:01,340 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 08:07:06] 2025-10-10 21:06:01,340 | INFO     | ***************************************
[2025-10-11 08:07:06] 2025-10-10 21:06:01,340 | INFO     | 
[2025-10-11 08:07:06] 2025-10-10 21:06:01,341 | INFO     | architecture information:
[2025-10-11 08:07:06] 2025-10-10 21:06:01,341 | INFO     | executing command: cat /etc/os-release
[2025-10-11 08:07:06] 2025-10-10 21:06:01,350 | INFO     | cat /etc/os-release:
[2025-10-11 08:07:06] NAME="CentOS Linux"
[2025-10-11 08:07:06] VERSION="7 (Core)"
[2025-10-11 08:07:06] ID="centos"
[2025-10-11 08:07:06] ID_LIKE="rhel fedora"
[2025-10-11 08:07:06] VERSION_ID="7"
[2025-10-11 08:07:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 08:07:06] ANSI_COLOR="0;31"
[2025-10-11 08:07:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 08:07:06] HOME_URL="https://www.centos.org/"
[2025-10-11 08:07:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 08:07:06] 
[2025-10-11 08:07:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 08:07:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 08:07:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 08:07:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 08:07:06] 
[2025-10-11 08:07:06] 2025-10-10 21:06:01,350 | INFO     | ***************************************
[2025-10-11 08:07:06] 2025-10-10 21:06:01,853 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/14
[2025-10-11 08:07:06] 2025-10-10 21:06:01,864 | INFO     | sufficient remaining disk space (206964785152 B)
[2025-10-11 08:07:06] 2025-10-10 21:06:01,865 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 08:07:06] 2025-10-10 21:06:01,865 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 08:07:06] 2025-10-10 21:06:01,865 | INFO     | update_server=False
[2025-10-11 08:07:06] 2025-10-10 21:06:01,865 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 08:07:06] 2025-10-10 21:06:01,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:07:06] 2025-10-10 21:06:01,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 08:07:06] 2025-10-10 21:06:01,935 | INFO     | all job control threads have been joined
[2025-10-11 08:07:06] 2025-10-10 21:06:02,297 | INFO     | all data control threads have been joined
[2025-10-11 08:07:06] 2025-10-10 21:06:02,493 | WARNING  | process 1312295 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 08:07:06] 2025-10-10 21:06:02,544 | INFO     | using path: /home/michael/Boinc/BOINC/slots/14/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 08:07:06] 2025-10-10 21:06:02,624 | INFO     | number of running child processes to parent process 1312295: 1
[2025-10-11 08:07:06] 2025-10-10 21:06:02,624 | INFO     | maximum number of monitored processes: 6
[2025-10-11 08:07:06] 2025-10-10 21:06:02,624 | INFO     | aborting job monitoring since job object (job id=6837448898) has expired
[2025-10-11 08:07:06] 2025-10-10 21:06:02,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:07:06] 2025-10-10 21:06:02,624 | INFO     | will abort loop
[2025-10-11 08:07:06] 2025-10-10 21:06:02,870 | INFO     | [job] queue monitor thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:02,870 | INFO     | [job] retrieve thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:02,941 | INFO     | [job] control thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:03,193 | INFO     | all payload control threads have been joined
[2025-10-11 08:07:06] 2025-10-10 21:06:03,267 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:03,301 | INFO     | [data] control thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:03,432 | INFO     | [data] copytool_in thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:03,599 | INFO     | [payload] validate_post thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:03,628 | INFO     | [job] job monitor thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:03,870 | INFO     | [data] copytool_out thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:03,931 | INFO     | [payload] failed_post thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:04,090 | INFO     | [job] validate thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:04,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 08:07:06] 2025-10-10 21:06:04,197 | INFO     | [payload] control thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:04,208 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:04,298 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:08,185 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:12,249 | INFO     | job.realtimelogging is not enabled
[2025-10-11 08:07:06] 2025-10-10 21:06:13,254 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 08:07:06] 2025-10-10 21:06:31,372 | INFO     | PID=1299763 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 08:07:06] 2025-10-10 21:06:31,372 | INFO     | .. there are 4 such processes running
[2025-10-11 08:07:06] 2025-10-10 21:06:31,372 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 08:07:06] 2025-10-10 21:06:31,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 08:07:06] 2025-10-10 21:06:31,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 08:07:06] 2025-10-10 21:07:00,282 | INFO     | [monitor] cgroup control has ended
[2025-10-11 08:07:06] 2025-10-10 21:07:01,781 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132413342783296)>', '<ExcThread(monitor, started 132412616988416)>']
[2025-10-11 08:07:06] 2025-10-10 21:07:02,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 08:07:06] 2025-10-10 21:07:02,522 | INFO     | [monitor] control thread has ended
[2025-10-11 08:07:06] 2025-10-10 21:07:06,806 | INFO     | all workflow threads have been joined
[2025-10-11 08:07:06] 2025-10-10 21:07:06,806 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 08:07:06] 2025-10-10 21:07:06,806 | INFO     | traces error code: 0
[2025-10-11 08:07:06] 2025-10-10 21:07:06,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 08:07:06] 2025-10-10 21:07:06,864 [wrapper] ==== pilot stdout END ====
[2025-10-11 08:07:06] 2025-10-10 21:07:06,866 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 08:07:06] 2025-10-10 21:07:06,867 [wrapper] pilotpid: 1299763
[2025-10-11 08:07:06] 2025-10-10 21:07:06,869 [wrapper] Pilot exit status: 0
[2025-10-11 08:07:06] 2025-10-10 21:07:06,876 [wrapper] pandaids: 6837448898
[2025-10-11 08:07:06] 2025-10-10 21:07:06,897 [wrapper] cleanup supervisor_pilot 1366468 1299764
[2025-10-11 08:07:06] 2025-10-10 21:07:06,899 [wrapper] Test setup, not cleaning
[2025-10-11 08:07:06] 2025-10-10 21:07:06,900 [wrapper] apfmon messages muted
[2025-10-11 08:07:06] 2025-10-10 21:07:06,902 [wrapper] ==== wrapper stdout END ====
[2025-10-11 08:07:06] 2025-10-10 21:07:06,903 [wrapper] ==== wrapper stderr END ====
[2025-10-11 08:07:06]  *** Error codes and diagnostics ***
[2025-10-11 08:07:06]     "exeErrorCode": 0,
[2025-10-11 08:07:06]     "exeErrorDiag": "",
[2025-10-11 08:07:06]     "pilotErrorCode": 0,
[2025-10-11 08:07:06]     "pilotErrorDiag": "",
[2025-10-11 08:07:06]  *** Listing of results directory ***
[2025-10-11 08:07:06] total 419136
[2025-10-11 08:07:06] -rw-r--r-- 1 michael michael    557409 Oct 10 15:44 pilot3.tar.gz
[2025-10-11 08:07:06] -rw-r--r-- 1 michael michael      5112 Oct 10 16:13 queuedata.json
[2025-10-11 08:07:06] -rwx------ 1 michael michael     36292 Oct 10 16:13 runpilot2-wrapper.sh
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael       100 Oct 11 06:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 08:07:06] -rwxr-xr-x 1 michael michael      7986 Oct 11 06:24 run_atlas
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael       105 Oct 11 06:24 job.xml
[2025-10-11 08:07:06] -rw-r--r-- 2 michael michael 219462269 Oct 11 06:24 EVNT.46676267._001337.pool.root.1
[2025-10-11 08:07:06] drwxrwx--x 2 michael michael      4096 Oct 11 06:24 shared
[2025-10-11 08:07:06] -rw-r--r-- 2 michael michael    569683 Oct 11 06:24 input.tar.gz
[2025-10-11 08:07:06] -rw-r--r-- 2 michael michael     15120 Oct 11 06:24 start_atlas.sh
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael         0 Oct 11 06:24 boinc_lockfile
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael      2550 Oct 11 06:24 pandaJob.out
[2025-10-11 08:07:06] -rw------- 1 michael michael    975541 Oct 11 06:24 agis_schedconf.cvmfs.json
[2025-10-11 08:07:06] -rw------- 1 michael michael   1560580 Oct 11 06:24 agis_ddmendpoints.agis.ALL.json
[2025-10-11 08:07:06] drwx------ 5 michael michael      4096 Oct 11 06:24 pilot3
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael      9804 Oct 11 07:21 init_data.xml
[2025-10-11 08:07:06] -rw------- 1 michael michael 203406904 Oct 11 08:05 HITS.46676269._032848.pool.root.1
[2025-10-11 08:07:06] -rw------- 1 michael michael        95 Oct 11 08:05 pilot_heartbeat.json
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael       529 Oct 11 08:05 boinc_task_state.xml
[2025-10-11 08:07:06] -rw------- 1 michael michael      1031 Oct 11 08:05 memory_monitor_summary.json
[2025-10-11 08:07:06] -rw------- 1 michael michael    301172 Oct 11 08:05 log.46676269._032848.job.log.tgz.1
[2025-10-11 08:07:06] -rw------- 1 michael michael      7723 Oct 11 08:06 heartbeat.json
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael      8192 Oct 11 08:06 boinc_mmap_file
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael        27 Oct 11 08:06 wrapper_checkpoint.txt
[2025-10-11 08:07:06] -rw------- 1 michael michael      5441 Oct 11 08:07 pilotlog.txt
[2025-10-11 08:07:06] -rw------- 1 michael michael    908422 Oct 11 08:07 log.46676269._032848.job.log.1
[2025-10-11 08:07:06] -rw------- 1 michael michael       357 Oct 11 08:07 output.list
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael       620 Oct 11 08:07 runtime_log
[2025-10-11 08:07:06] -rw------- 1 michael michael   1228800 Oct 11 08:07 result.tar.gz
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael      8811 Oct 11 08:07 runtime_log.err
[2025-10-11 08:07:06] -rw------- 1 michael michael       640 Oct 11 08:07 4TrLDmmcKR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUPcNDmnJ2s3n.diag
[2025-10-11 08:07:06] -rw-rw-r-- 1 michael michael     20739 Oct 11 08:07 stderr.txt
[2025-10-11 08:07:06] HITS file was successfully produced:
[2025-10-11 08:07:06] -rw------- 1 michael michael 203406904 Oct 11 08:05 shared/HITS.pool.root.1
[2025-10-11 08:07:06]  *** Contents of shared directory: ***
[2025-10-11 08:07:06] total 414744
[2025-10-11 08:07:06] -rw-r--r-- 2 michael michael 219462269 Oct 11 06:24 ATLAS.root_0
[2025-10-11 08:07:06] -rw-r--r-- 2 michael michael    569683 Oct 11 06:24 input.tar.gz
[2025-10-11 08:07:06] -rw-r--r-- 2 michael michael     15120 Oct 11 06:24 start_atlas.sh
[2025-10-11 08:07:06] -rw------- 1 michael michael 203406904 Oct 11 08:05 HITS.pool.root.1
[2025-10-11 08:07:06] -rw------- 1 michael michael   1228800 Oct 11 08:07 result.tar.gz
08:07:07 (1295890): run_atlas exited; CPU time 23275.098663
08:07:07 (1295890): called boinc_finish(0)

</stderr_txt>
]]>

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