Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:26:19 (5251): wrapper (7.7.26015): starting
09:26:19 (5251): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 09:26:19] Arguments: --nthreads 12
[2025-10-10 09:26:19] Threads: 12
[2025-10-10 09:26:19] Checking for CVMFS
[2025-10-10 09:26:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 09:26:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 09:26:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 09:26:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 09:26:19] 2.11.2.0 3103 10035 85652 151547 1 57 18087969 20275201 1 130560 0 10037987 99.993 332296 45827 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 09:26:19] CVMFS is ok
[2025-10-10 09:26:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 09:26:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 09:26:19] Further information can be found at the LHC@home message board.
[2025-10-10 09:26:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 09:26:19] Checking for apptainer binary...
[2025-10-10 09:26:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 09:26:19] Running /usr/bin/apptainer --version
[2025-10-10 09:26:19] apptainer version 1.3.2-1.el7
[2025-10-10 09:26:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 09:26:21] c-115-41.aglt2.org
[2025-10-10 09:26:21] apptainer works
[2025-10-10 09:26:21] Set ATHENA_PROC_NUMBER=12
[2025-10-10 09:26:21] Set ATHENA_CORE_NUMBER=12
[2025-10-10 09:26:21] Starting ATLAS job with PandaID=6837449432
[2025-10-10 09:26:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 10:29:53]  *** The last 200 lines of the pilot log: ***
[2025-10-10 10:29:53]  replicas=None
[2025-10-10 10:29:53]  scope=mc23_13p6TeV
[2025-10-10 10:29:53]  status=None
[2025-10-10 10:29:53]  status_code=0
[2025-10-10 10:29:53]  storage_token=
[2025-10-10 10:29:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837449432/log.46676269._032993.job.log.tgz.1
[2025-10-10 10:29:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/96/log.46676269._032993.job.log.tgz.1
[2025-10-10 10:29:53]  workdir=None
[2025-10-10 10:29:53] ]
[2025-10-10 10:29:53] 2025-10-10 14:29:12,587 | INFO     | transferring file log.46676269._032993.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837449432/log.46676269._032993.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 10:29:53] 2025-10-10 14:29:12,587 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837449432/log.46676269._032993.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._032993.job
[2025-10-10 10:29:53] 2025-10-10 14:29:12,608 | INFO     | adding to output.list: log.46676269._032993.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/96/log.46676269._032993.job.log.tg
[2025-10-10 10:29:53] 2025-10-10 14:29:12,608 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 10:29:53] 2025-10-10 14:29:12,609 | INFO     | summary of transferred files:
[2025-10-10 10:29:53] 2025-10-10 14:29:12,609 | INFO     |  -- lfn=log.46676269._032993.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 10:29:53] 2025-10-10 14:29:12,609 | INFO     | stage-out finished correctly
[2025-10-10 10:29:53] 2025-10-10 14:29:14,139 | INFO     | time since job start (3759s) is within the limit (172800.0s)
[2025-10-10 10:29:53] 2025-10-10 14:29:14,338 | INFO     | monitor loop #283: job 0:6837449432 is in state 'finished'
[2025-10-10 10:29:53] 2025-10-10 14:29:14,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 10:29:53] 2025-10-10 14:29:14,758 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 10:29:53] 2025-10-10 14:29:16,141 | INFO     | time since job start (3761s) is within the limit (172800.0s)
[2025-10-10 10:29:53] 2025-10-10 14:29:16,278 | INFO     | job 6837449432 has state=finished
[2025-10-10 10:29:53] 2025-10-10 14:29:16,279 | INFO     | preparing for final server update for job 6837449432 in state='finished'
[2025-10-10 10:29:53] 2025-10-10 14:29:16,279 | INFO     | this job has now completed (state=finished)
[2025-10-10 10:29:53] 2025-10-10 14:29:16,279 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 10:29:53] 2025-10-10 14:29:16,280 | INFO     | log transfer has been attempted: DONE
[2025-10-10 10:29:53] 2025-10-10 14:29:16,280 | INFO     | job 6837449432 has finished - writing final server update
[2025-10-10 10:29:53] 2025-10-10 14:29:16,280 | INFO     | total number of processed events: 400 (read)
[2025-10-10 10:29:53] 2025-10-10 14:29:16,281 | INFO     | executing command: lscpu
[2025-10-10 10:29:53] 2025-10-10 14:29:16,304 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 10:29:53] 2025-10-10 14:29:16,842 | INFO     | monitor loop #284: job 0:6837449432 is in state 'finished'
[2025-10-10 10:29:53] 2025-10-10 14:29:16,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 10:29:53] 2025-10-10 14:29:18,147 | INFO     | time since job start (3763s) is within the limit (172800.0s)
[2025-10-10 10:29:53] 2025-10-10 14:29:19,345 | INFO     | monitor loop #285: job 0:6837449432 is in state 'finished'
[2025-10-10 10:29:53] 2025-10-10 14:29:19,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 10:29:53] 2025-10-10 14:29:20,152 | INFO     | time since job start (3765s) is within the limit (172800.0s)
[2025-10-10 10:29:53] 2025-10-10 14:29:20,866 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-10 10:29:53] 2025-10-10 14:29:20,868 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-10 10:29:53] 2025-10-10 14:29:20,869 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837449432/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 10:29:53] 2025-10-10 14:29:20,870 | INFO     | extracted standard info from prmon json
[2025-10-10 10:29:53] 2025-10-10 14:29:20,870 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 10:29:53] 2025-10-10 14:29:20,870 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 10:29:53] 2025-10-10 14:29:20,870 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 10:29:53] 2025-10-10 14:29:20,871 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 10:29:53] 2025-10-10 14:29:20,872 | INFO     | fitting pss+swap vs Time
[2025-10-10 10:29:53] 2025-10-10 14:29:20,872 | INFO     | sum of square deviations: 51573060.0
[2025-10-10 10:29:53] 2025-10-10 14:29:20,872 | INFO     | sum of deviations: -5706934788.000001
[2025-10-10 10:29:53] 2025-10-10 14:29:20,872 | INFO     | mean x: 1760104776.0
[2025-10-10 10:29:53] 2025-10-10 14:29:20,872 | INFO     | mean y: 2859994.890909091
[2025-10-10 10:29:53] 2025-10-10 14:29:20,873 | INFO     | -- intersect: 194771275455.97366
[2025-10-10 10:29:53] 2025-10-10 14:29:20,873 | INFO     | intersect: 194771275455.97366
[2025-10-10 10:29:53] 2025-10-10 14:29:20,873 | INFO     | chi2: 0.04268955719096176
[2025-10-10 10:29:53] 2025-10-10 14:29:20,873 | INFO     | -- intersect: 194771275455.97366
[2025-10-10 10:29:53] 2025-10-10 14:29:20,873 | INFO     | current memory leak: -110.66 B/s (using 55 data points, chi2=0.04)
[2025-10-10 10:29:53] 2025-10-10 14:29:20,873 | INFO     | could have reported an average CPU frequency of 2181 MHz (6 samples)
[2025-10-10 10:29:53] 2025-10-10 14:29:20,873 | INFO     | ..............................
[2025-10-10 10:29:53] 2025-10-10 14:29:20,874 | INFO     | . Timing measurements:
[2025-10-10 10:29:53] 2025-10-10 14:29:20,874 | INFO     | . get job = 0 s
[2025-10-10 10:29:53] 2025-10-10 14:29:20,874 | INFO     | . initial setup = 2 s
[2025-10-10 10:29:53] 2025-10-10 14:29:20,874 | INFO     | . payload setup = 6 s
[2025-10-10 10:29:53] 2025-10-10 14:29:20,874 | INFO     | . stage-in = 0 s
[2025-10-10 10:29:53] 2025-10-10 14:29:20,874 | INFO     | . payload execution = 3729 s
[2025-10-10 10:29:53] 2025-10-10 14:29:20,874 | INFO     | . stage-out = 0 s
[2025-10-10 10:29:53] 2025-10-10 14:29:20,874 | INFO     | . log creation = 0 s
[2025-10-10 10:29:53] 2025-10-10 14:29:20,874 | INFO     | ..............................
[2025-10-10 10:29:53] 2025-10-10 14:29:20,950 | INFO     | 
[2025-10-10 10:29:53] 2025-10-10 14:29:20,951 | INFO     | job summary report
[2025-10-10 10:29:53] 2025-10-10 14:29:20,951 | INFO     | --------------------------------------------------
[2025-10-10 10:29:53] 2025-10-10 14:29:20,951 | INFO     | PanDA job id: 6837449432
[2025-10-10 10:29:53] 2025-10-10 14:29:20,951 | INFO     | task id: 46676269
[2025-10-10 10:29:53] 2025-10-10 14:29:20,951 | INFO     | errors: (none)
[2025-10-10 10:29:53] 2025-10-10 14:29:20,952 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 10:29:53] 2025-10-10 14:29:20,952 | INFO     | pilot state: finished 
[2025-10-10 10:29:53] 2025-10-10 14:29:20,952 | INFO     | transexitcode: 0
[2025-10-10 10:29:53] 2025-10-10 14:29:20,952 | INFO     | exeerrorcode: 0
[2025-10-10 10:29:53] 2025-10-10 14:29:20,952 | INFO     | exeerrordiag: 
[2025-10-10 10:29:53] 2025-10-10 14:29:20,952 | INFO     | exitcode: 0
[2025-10-10 10:29:53] 2025-10-10 14:29:20,952 | INFO     | exitmsg: OK
[2025-10-10 10:29:53] 2025-10-10 14:29:20,953 | INFO     | cpuconsumptiontime: 41149 s
[2025-10-10 10:29:53] 2025-10-10 14:29:20,953 | INFO     | nevents: 400
[2025-10-10 10:29:53] 2025-10-10 14:29:20,953 | INFO     | neventsw: 0
[2025-10-10 10:29:53] 2025-10-10 14:29:20,953 | INFO     | pid: 15369
[2025-10-10 10:29:53] 2025-10-10 14:29:20,953 | INFO     | pgrp: 15369
[2025-10-10 10:29:53] 2025-10-10 14:29:20,953 | INFO     | corecount: 12
[2025-10-10 10:29:53] 2025-10-10 14:29:20,954 | INFO     | event service: False
[2025-10-10 10:29:53] 2025-10-10 14:29:20,954 | INFO     | sizes: {0: 2348685, 1: 2348884, 5: 2349146, 11: 2349202, 3740: 2374931, 3741: 2383929, 3743: 2384113, 3749: 2384307}
[2025-10-10 10:29:53] 2025-10-10 14:29:20,954 | INFO     | --------------------------------------------------
[2025-10-10 10:29:53] 2025-10-10 14:29:20,954 | INFO     | 
[2025-10-10 10:29:53] 2025-10-10 14:29:20,954 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 10:29:53] 2025-10-10 14:29:20,980 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,980 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,980 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,980 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,983 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 10:29:53] 2025-10-10 14:29:20,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,983 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 10:29:53] 2025-10-10 14:29:20,983 | INFO     | job 6837449432 has completed (purged errors)
[2025-10-10 10:29:53] 2025-10-10 14:29:20,983 | INFO     | overall cleanup function is called
[2025-10-10 10:29:53] 2025-10-10 14:29:21,991 | INFO     | --- collectZombieJob: --- 10, [15369]
[2025-10-10 10:29:53] 2025-10-10 14:29:21,992 | INFO     | zombie collector waiting for pid 15369
[2025-10-10 10:29:53] 2025-10-10 14:29:21,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 10:29:53] 2025-10-10 14:29:21,992 | INFO     | collected zombie processes
[2025-10-10 10:29:53] 2025-10-10 14:29:21,992 | INFO     | will attempt to kill all subprocesses of pid=15369
[2025-10-10 10:29:53] 2025-10-10 14:29:22,084 | INFO     | process IDs to be killed: [15369] (in reverse order)
[2025-10-10 10:29:53] 2025-10-10 14:29:22,159 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 10:29:53] 2025-10-10 14:29:22,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 10:29:53] 2025-10-10 14:29:22,163 | INFO     | did not find any defunct processes belonging to 15369
[2025-10-10 10:29:53] 2025-10-10 14:29:22,166 | INFO     | did not find any defunct processes belonging to 15369
[2025-10-10 10:29:53] 2025-10-10 14:29:22,166 | INFO     | ready for new job
[2025-10-10 10:29:53] 2025-10-10 14:29:22,166 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 10:29:53] 2025-10-10 14:29:22,168 | INFO     | ***************************************
[2025-10-10 10:29:53] 2025-10-10 14:29:22,168 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 10:29:53] 2025-10-10 14:29:22,168 | INFO     | ***************************************
[2025-10-10 10:29:53] 2025-10-10 14:29:22,168 | INFO     | 
[2025-10-10 10:29:53] 2025-10-10 14:29:22,169 | INFO     | architecture information:
[2025-10-10 10:29:53] 2025-10-10 14:29:22,169 | INFO     | executing command: cat /etc/os-release
[2025-10-10 10:29:53] 2025-10-10 14:29:22,185 | INFO     | cat /etc/os-release:
[2025-10-10 10:29:53] NAME="CentOS Linux"
[2025-10-10 10:29:53] VERSION="7 (Core)"
[2025-10-10 10:29:53] ID="centos"
[2025-10-10 10:29:53] ID_LIKE="rhel fedora"
[2025-10-10 10:29:53] VERSION_ID="7"
[2025-10-10 10:29:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 10:29:53] ANSI_COLOR="0;31"
[2025-10-10 10:29:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 10:29:53] HOME_URL="https://www.centos.org/"
[2025-10-10 10:29:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 10:29:53] 
[2025-10-10 10:29:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 10:29:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 10:29:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 10:29:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 10:29:53] 
[2025-10-10 10:29:53] 2025-10-10 14:29:22,185 | INFO     | ***************************************
[2025-10-10 10:29:53] 2025-10-10 14:29:22,686 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 10:29:53] 2025-10-10 14:29:22,705 | INFO     | sufficient remaining disk space (18591252480 B)
[2025-10-10 10:29:53] 2025-10-10 14:29:22,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 10:29:53] 2025-10-10 14:29:22,705 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 10:29:53] 2025-10-10 14:29:22,705 | INFO     | update_server=False
[2025-10-10 10:29:53] 2025-10-10 14:29:22,706 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 10:29:53] 2025-10-10 14:29:22,706 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:29:53] 2025-10-10 14:29:22,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:29:53] 2025-10-10 14:29:22,854 | INFO     | aborting loop
[2025-10-10 10:29:53] 2025-10-10 14:29:23,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 10:29:53] 2025-10-10 14:29:23,386 | INFO     | all payload control threads have been joined
[2025-10-10 10:29:53] 2025-10-10 14:29:23,711 | INFO     | [job] retrieve thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:23,712 | INFO     | [job] queue monitor thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:23,733 | INFO     | all data control threads have been joined
[2025-10-10 10:29:53] 2025-10-10 14:29:23,859 | INFO     | [job] job monitor thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:23,991 | INFO     | [payload] validate_post thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:24,040 | INFO     | all job control threads have been joined
[2025-10-10 10:29:53] 2025-10-10 14:29:24,228 | INFO     | [payload] failed_post thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:24,391 | INFO     | [payload] control thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:24,416 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:24,423 | INFO     | [job] validate thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:24,711 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:24,715 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:24,739 | INFO     | [data] control thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:24,908 | INFO     | [data] copytool_in thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:25,045 | INFO     | [job] control thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:25,207 | INFO     | [data] copytool_out thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:25,342 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 10:29:53] 2025-10-10 14:29:29,347 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:33,580 | INFO     | job.realtimelogging is not enabled
[2025-10-10 10:29:53] 2025-10-10 14:29:34,585 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 10:29:53] 2025-10-10 14:29:41,180 | INFO     | [monitor] cgroup control has ended
[2025-10-10 10:29:53] 2025-10-10 14:29:41,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123146884928)>', '<ExcThread(monitor, started 140122435614464)>']
[2025-10-10 10:29:53] 2025-10-10 14:29:46,804 | INFO     | all workflow threads have been joined
[2025-10-10 10:29:53] 2025-10-10 14:29:46,804 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 10:29:53] 2025-10-10 14:29:46,811 | INFO     | traces error code: 0
[2025-10-10 10:29:53] 2025-10-10 14:29:46,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 10:29:53] 2025-10-10 14:29:53,354 | INFO     | PID=8982 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-10 10:29:53] 2025-10-10 14:29:53,354 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 10:29:53] 2025-10-10 14:29:53,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 10:29:53] 2025-10-10 14:29:53,355 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 10:29:53] 2025-10-10 14:29:53,355 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 10:29:53] 2025-10-10 14:29:53,355 | INFO     | [monitor] control thread has ended
[2025-10-10 10:29:53] 2025-10-10 14:29:53,440 [wrapper] ==== pilot stdout END ====
[2025-10-10 10:29:53] 2025-10-10 14:29:53,444 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 10:29:53] 2025-10-10 14:29:53,447 [wrapper] pilotpid: 8982
[2025-10-10 10:29:53] 2025-10-10 14:29:53,451 [wrapper] Pilot exit status: 0
[2025-10-10 10:29:53] 2025-10-10 14:29:53,466 [wrapper] pandaids: 6837449432
[2025-10-10 10:29:53] 2025-10-10 14:29:53,505 [wrapper] cleanup supervisor_pilot 12354 8983
[2025-10-10 10:29:53] 2025-10-10 14:29:53,509 [wrapper] Test setup, not cleaning
[2025-10-10 10:29:53] 2025-10-10 14:29:53,513 [wrapper] apfmon messages muted
[2025-10-10 10:29:53] 2025-10-10 14:29:53,517 [wrapper] ==== wrapper stdout END ====
[2025-10-10 10:29:53] 2025-10-10 14:29:53,521 [wrapper] ==== wrapper stderr END ====
[2025-10-10 10:29:53]  *** Error codes and diagnostics ***
[2025-10-10 10:29:53]     "exeErrorCode": 0,
[2025-10-10 10:29:53]     "exeErrorDiag": "",
[2025-10-10 10:29:53]     "pilotErrorCode": 0,
[2025-10-10 10:29:53]     "pilotErrorDiag": "",
[2025-10-10 10:29:53]  *** Listing of results directory ***
[2025-10-10 10:29:53] total 409104
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 01:14 pilot3.tar.gz
[2025-10-10 10:29:53] -rwx------ 1 boincer umatlas     36292 Oct 10 01:21 runpilot2-wrapper.sh
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 01:21 queuedata.json
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas       100 Oct 10 09:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 10:29:53] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 09:26 run_atlas
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas       105 Oct 10 09:26 job.xml
[2025-10-10 10:29:53] -rw-r--r-- 2 boincer umatlas 220413545 Oct 10 09:26 EVNT.46676267._001343.pool.root.1
[2025-10-10 10:29:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 09:26 start_atlas.sh
[2025-10-10 10:29:53] drwxrwx--x 2 boincer umatlas      4096 Oct 10 09:26 shared
[2025-10-10 10:29:53] -rw-r--r-- 2 boincer umatlas    569676 Oct 10 09:26 input.tar.gz
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas         0 Oct 10 09:26 boinc_lockfile
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas      2549 Oct 10 09:26 pandaJob.out
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas    975525 Oct 10 09:26 agis_schedconf.cvmfs.json
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas   1560580 Oct 10 09:26 agis_ddmendpoints.agis.ALL.json
[2025-10-10 10:29:53] drwx------ 5 boincer umatlas      4096 Oct 10 09:26 pilot3
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas      5954 Oct 10 10:22 init_data.xml
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas 192726552 Oct 10 10:28 HITS.46676269._032993.pool.root.1
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas       529 Oct 10 10:28 boinc_task_state.xml
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas      1050 Oct 10 10:29 memory_monitor_summary.json
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas    382062 Oct 10 10:29 log.46676269._032993.job.log.tgz.1
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas      7856 Oct 10 10:29 heartbeat.json
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 10:29 boinc_mmap_file
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas        27 Oct 10 10:29 wrapper_checkpoint.txt
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas       744 Oct 10 10:29 pilotlog.txt
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas        95 Oct 10 10:29 pilot_heartbeat.json
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas    557477 Oct 10 10:29 log.46676269._032993.job.log.1
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas       357 Oct 10 10:29 output.list
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas       620 Oct 10 10:29 runtime_log
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas    962560 Oct 10 10:29 result.tar.gz
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas       659 Oct 10 10:29 YOsNDmCkKR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoRcNDmVM8NFn.diag
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas      8705 Oct 10 10:29 runtime_log.err
[2025-10-10 10:29:53] -rw-r--r-- 1 boincer umatlas     21826 Oct 10 10:29 stderr.txt
[2025-10-10 10:29:53] HITS file was successfully produced:
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas 192726552 Oct 10 10:28 shared/HITS.pool.root.1
[2025-10-10 10:29:53]  *** Contents of shared directory: ***
[2025-10-10 10:29:53] total 404980
[2025-10-10 10:29:53] -rw-r--r-- 2 boincer umatlas 220413545 Oct 10 09:26 ATLAS.root_0
[2025-10-10 10:29:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 09:26 start_atlas.sh
[2025-10-10 10:29:53] -rw-r--r-- 2 boincer umatlas    569676 Oct 10 09:26 input.tar.gz
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas 192726552 Oct 10 10:28 HITS.pool.root.1
[2025-10-10 10:29:53] -rw------- 1 boincer umatlas    962560 Oct 10 10:29 result.tar.gz
10:29:55 (5251): run_atlas exited; CPU time 41147.313023
10:29:55 (5251): called boinc_finish(0)

</stderr_txt>
]]>

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