Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:28:40 (4176766): wrapper (7.7.26015): starting
04:28:40 (4176766): wrapper: running run_atlas (--nthreads 6)
[2025-10-11 04:28:40] Arguments: --nthreads 6
[2025-10-11 04:28:40] Threads: 6
[2025-10-11 04:28:40] Checking for CVMFS
[2025-10-11 04:28:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 04:28:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 04:28:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 04:28:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 04:28:41] 2.11.5.0 3102357 1362 79316 151559 1 60 42335912 52428801 28 130560 0 3382249 99.996 51913 16 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-11 04:28:41] CVMFS is ok
[2025-10-11 04:28:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 04:28:41] Checking for apptainer binary...
[2025-10-11 04:28:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 04:28:41] Running /usr/bin/apptainer --version
[2025-10-11 04:28:41] apptainer version 1.3.6-1.el9
[2025-10-11 04:28:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 04:28:41] testio002
[2025-10-11 04:28:41] apptainer works
[2025-10-11 04:28:41] Set ATHENA_PROC_NUMBER=6
[2025-10-11 04:28:41] Set ATHENA_CORE_NUMBER=6
[2025-10-11 04:28:41] Starting ATLAS job with PandaID=6837363675
[2025-10-11 04:28:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 05:25:18]  *** The last 200 lines of the pilot log: ***
[2025-10-11 05:25:18] 2025-10-10 20:24:21,571 | INFO     | time since job start (3334s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:22,679 | INFO     | monitor loop #270: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:22,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:23,576 | INFO     | time since job start (3336s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:25,181 | INFO     | monitor loop #271: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:25,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:25,581 | INFO     | time since job start (3338s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:26,622 | INFO     | PID=4181094 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 05:25:18] 2025-10-10 20:24:26,622 | INFO     | .. there are 2 such processes running
[2025-10-11 05:25:18] 2025-10-10 20:24:27,622 | INFO     | time since job start (3340s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:27,684 | INFO     | monitor loop #272: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:27,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:29,628 | INFO     | time since job start (3342s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:30,187 | INFO     | monitor loop #273: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:30,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:31,633 | INFO     | time since job start (3344s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:32,690 | INFO     | monitor loop #274: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:32,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:33,638 | INFO     | time since job start (3346s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:35,193 | INFO     | monitor loop #275: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:35,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:35,643 | INFO     | time since job start (3348s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:37,648 | INFO     | time since job start (3350s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:37,695 | INFO     | monitor loop #276: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:37,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:39,653 | INFO     | time since job start (3352s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:40,198 | INFO     | monitor loop #277: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:40,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:41,659 | INFO     | time since job start (3354s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:42,701 | INFO     | monitor loop #278: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:42,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:43,664 | INFO     | time since job start (3356s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:45,204 | INFO     | monitor loop #279: job 0:6837363675 is in state 'finished'
[2025-10-11 05:25:18] 2025-10-10 20:24:45,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 05:25:18] 2025-10-10 20:24:45,669 | INFO     | time since job start (3358s) is within the limit (172800.0s)
[2025-10-11 05:25:18] 2025-10-10 20:24:46,258 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 05:25:18] 2025-10-10 20:24:46,259 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4175.5849375
[2025-10-11 05:25:18] 2025-10-10 20:24:46,260 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6837363675/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:25:18] 2025-10-10 20:24:46,260 | INFO     | extracted standard info from prmon json
[2025-10-11 05:25:18] 2025-10-10 20:24:46,260 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 05:25:18] 2025-10-10 20:24:46,260 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 05:25:18] 2025-10-10 20:24:46,260 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:25:18] 2025-10-10 20:24:46,260 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | fitting pss+swap vs Time
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | sum of square deviations: 32179208.0
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | sum of deviations: -2955841864.0
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | mean x: 1760126251.0
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | mean y: 2568796.170212766
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | -- intersect: 161680098542.43283
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | intersect: 161680098542.43283
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | chi2: 0.02820480109735915
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | -- intersect: 161680098542.43283
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | current memory leak: -91.86 B/s (using 47 data points, chi2=0.03)
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | could have reported an average CPU frequency of 4354 MHz (5 samples)
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | ..............................
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | . Timing measurements:
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | . get job = 0 s
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | . initial setup = 4 s
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | . payload setup = 1 s
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | . stage-in = 0 s
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | . payload execution = 3259 s
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | . stage-out = 0 s
[2025-10-11 05:25:18] 2025-10-10 20:24:46,261 | INFO     | . log creation = 0 s
[2025-10-11 05:25:18] 2025-10-10 20:24:46,262 | INFO     | ..............................
[2025-10-11 05:25:18] 2025-10-10 20:24:46,447 | INFO     | 
[2025-10-11 05:25:18] 2025-10-10 20:24:46,447 | INFO     | job summary report
[2025-10-11 05:25:18] 2025-10-10 20:24:46,447 | INFO     | --------------------------------------------------
[2025-10-11 05:25:18] 2025-10-10 20:24:46,447 | INFO     | PanDA job id: 6837363675
[2025-10-11 05:25:18] 2025-10-10 20:24:46,448 | INFO     | task id: 46676269
[2025-10-11 05:25:18] 2025-10-10 20:24:46,448 | INFO     | errors: (none)
[2025-10-11 05:25:18] 2025-10-10 20:24:46,448 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 05:25:18] 2025-10-10 20:24:46,448 | INFO     | pilot state: finished 
[2025-10-11 05:25:18] 2025-10-10 20:24:46,448 | INFO     | transexitcode: 0
[2025-10-11 05:25:18] 2025-10-10 20:24:46,448 | INFO     | exeerrorcode: 0
[2025-10-11 05:25:18] 2025-10-10 20:24:46,448 | INFO     | exeerrordiag: 
[2025-10-11 05:25:18] 2025-10-10 20:24:46,448 | INFO     | exitcode: 0
[2025-10-11 05:25:18] 2025-10-10 20:24:46,449 | INFO     | exitmsg: OK
[2025-10-11 05:25:18] 2025-10-10 20:24:46,449 | INFO     | cpuconsumptiontime: 17675 s
[2025-10-11 05:25:18] 2025-10-10 20:24:46,449 | INFO     | nevents: 400
[2025-10-11 05:25:18] 2025-10-10 20:24:46,449 | INFO     | neventsw: 0
[2025-10-11 05:25:18] 2025-10-10 20:24:46,449 | INFO     | pid: 710
[2025-10-11 05:25:18] 2025-10-10 20:24:46,449 | INFO     | pgrp: 710
[2025-10-11 05:25:18] 2025-10-10 20:24:46,449 | INFO     | corecount: 6
[2025-10-11 05:25:18] 2025-10-10 20:24:46,449 | INFO     | event service: False
[2025-10-11 05:25:18] 2025-10-10 20:24:46,450 | INFO     | sizes: {0: 2348851, 1: 2349113, 11: 2349141, 3264: 2374650, 3265: 2383648, 3268: 2383704, 3347: 2384058}
[2025-10-11 05:25:18] 2025-10-10 20:24:46,450 | INFO     | --------------------------------------------------
[2025-10-11 05:25:18] 2025-10-10 20:24:46,450 | INFO     | 
[2025-10-11 05:25:18] 2025-10-10 20:24:46,450 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-11 05:25:18] 2025-10-10 20:24:46,470 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,470 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,470 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,470 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | job 6837363675 has completed (purged errors)
[2025-10-11 05:25:18] 2025-10-10 20:24:46,471 | INFO     | overall cleanup function is called
[2025-10-11 05:25:18] 2025-10-10 20:24:47,476 | INFO     | --- collectZombieJob: --- 10, [710]
[2025-10-11 05:25:18] 2025-10-10 20:24:47,477 | INFO     | zombie collector waiting for pid 710
[2025-10-11 05:25:18] 2025-10-10 20:24:47,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 05:25:18] 2025-10-10 20:24:47,477 | INFO     | collected zombie processes
[2025-10-11 05:25:18] 2025-10-10 20:24:47,477 | INFO     | will attempt to kill all subprocesses of pid=710
[2025-10-11 05:25:18] 2025-10-10 20:24:47,508 | INFO     | process IDs to be killed: [710] (in reverse order)
[2025-10-11 05:25:18] 2025-10-10 20:24:47,521 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 05:25:18] 2025-10-10 20:24:47,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 05:25:18] 2025-10-10 20:24:47,522 | INFO     | did not find any defunct processes belonging to 710
[2025-10-11 05:25:18] 2025-10-10 20:24:47,522 | INFO     | did not find any defunct processes belonging to 710
[2025-10-11 05:25:18] 2025-10-10 20:24:47,522 | INFO     | ready for new job
[2025-10-11 05:25:18] 2025-10-10 20:24:47,522 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 05:25:18] 2025-10-10 20:24:47,523 | INFO     | ***************************************
[2025-10-11 05:25:18] 2025-10-10 20:24:47,523 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 05:25:18] 2025-10-10 20:24:47,523 | INFO     | ***************************************
[2025-10-11 05:25:18] 2025-10-10 20:24:47,523 | INFO     | 
[2025-10-11 05:25:18] 2025-10-10 20:24:47,523 | INFO     | architecture information:
[2025-10-11 05:25:18] 2025-10-10 20:24:47,523 | INFO     | executing command: cat /etc/os-release
[2025-10-11 05:25:18] 2025-10-10 20:24:47,527 | INFO     | cat /etc/os-release:
[2025-10-11 05:25:18] NAME="CentOS Linux"
[2025-10-11 05:25:18] VERSION="7 (Core)"
[2025-10-11 05:25:18] ID="centos"
[2025-10-11 05:25:18] ID_LIKE="rhel fedora"
[2025-10-11 05:25:18] VERSION_ID="7"
[2025-10-11 05:25:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 05:25:18] ANSI_COLOR="0;31"
[2025-10-11 05:25:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 05:25:18] HOME_URL="https://www.centos.org/"
[2025-10-11 05:25:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 05:25:18] 
[2025-10-11 05:25:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 05:25:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 05:25:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 05:25:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 05:25:18] 
[2025-10-11 05:25:18] 2025-10-10 20:24:47,527 | INFO     | ***************************************
[2025-10-11 05:25:18] 2025-10-10 20:24:48,030 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-11 05:25:18] 2025-10-10 20:24:48,050 | INFO     | sufficient remaining disk space (301235961856 B)
[2025-10-11 05:25:18] 2025-10-10 20:24:48,050 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 05:25:18] 2025-10-10 20:24:48,050 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 05:25:18] 2025-10-10 20:24:48,051 | INFO     | update_server=False
[2025-10-11 05:25:18] 2025-10-10 20:24:48,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 05:25:18] 2025-10-10 20:24:48,051 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:25:18] 2025-10-10 20:24:48,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 05:25:18] 2025-10-10 20:24:48,670 | INFO     | all data control threads have been joined
[2025-10-11 05:25:18] 2025-10-10 20:24:48,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:25:18] 2025-10-10 20:24:48,711 | INFO     | aborting loop
[2025-10-11 05:25:18] 2025-10-10 20:24:49,056 | INFO     | [job] retrieve thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:49,057 | INFO     | [job] queue monitor thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:49,238 | INFO     | [payload] failed_post thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:49,345 | INFO     | all payload control threads have been joined
[2025-10-11 05:25:18] 2025-10-10 20:24:49,676 | INFO     | [data] control thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:49,709 | INFO     | all job control threads have been joined
[2025-10-11 05:25:18] 2025-10-10 20:24:49,717 | INFO     | [job] job monitor thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:49,730 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 05:25:18] 2025-10-10 20:24:49,757 | INFO     | [payload] validate_post thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:49,913 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:50,057 | INFO     | [data] copytool_out thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:50,228 | INFO     | [data] copytool_in thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:50,349 | INFO     | [payload] control thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:50,412 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:50,461 | INFO     | [job] validate thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:50,523 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:50,715 | INFO     | [job] control thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:52,297 | INFO     | [monitor] cgroup control has ended
[2025-10-11 05:25:18] 2025-10-10 20:24:53,736 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:58,257 | INFO     | job.realtimelogging is not enabled
[2025-10-11 05:25:18] 2025-10-10 20:24:59,263 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 05:25:18] 2025-10-10 20:24:59,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139945765369664)>', '<ExcThread(monitor, started 139944991385344)>']
[2025-10-11 05:25:18] 2025-10-10 20:25:04,951 | INFO     | all workflow threads have been joined
[2025-10-11 05:25:18] 2025-10-10 20:25:04,951 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 05:25:18] 2025-10-10 20:25:04,951 | INFO     | traces error code: 0
[2025-10-11 05:25:18] 2025-10-10 20:25:04,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 05:25:18] 2025-10-10 20:25:18,783 | INFO     | PID=4181094 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 05:25:18] 2025-10-10 20:25:18,787 | INFO     | .. there are 2 such processes running
[2025-10-11 05:25:18] 2025-10-10 20:25:18,788 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 05:25:18] 2025-10-10 20:25:18,788 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 05:25:18] 2025-10-10 20:25:18,788 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 05:25:18] 2025-10-10 20:25:18,788 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 05:25:18] 2025-10-10 20:25:18,788 | INFO     | [monitor] control thread has ended
[2025-10-11 05:25:18] 2025-10-10 20:25:18,827 [wrapper] ==== pilot stdout END ====
[2025-10-11 05:25:18] 2025-10-10 20:25:18,828 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 05:25:18] 2025-10-10 20:25:18,829 [wrapper] pilotpid: 4181094
[2025-10-11 05:25:18] 2025-10-10 20:25:18,829 [wrapper] Pilot exit status: 0
[2025-10-11 05:25:18] 2025-10-10 20:25:18,831 [wrapper] pandaids: 6837363675
[2025-10-11 05:25:18] 2025-10-10 20:25:18,838 [wrapper] cleanup supervisor_pilot   19326 4181095
[2025-10-11 05:25:18] 2025-10-10 20:25:18,839 [wrapper] Test setup, not cleaning
[2025-10-11 05:25:18] 2025-10-10 20:25:18,840 [wrapper] apfmon messages muted
[2025-10-11 05:25:18] 2025-10-10 20:25:18,840 [wrapper] ==== wrapper stdout END ====
[2025-10-11 05:25:18] 2025-10-10 20:25:18,841 [wrapper] ==== wrapper stderr END ====
[2025-10-11 05:25:18]  *** Error codes and diagnostics ***
[2025-10-11 05:25:18]     "exeErrorCode": 0,
[2025-10-11 05:25:18]     "exeErrorDiag": "",
[2025-10-11 05:25:18]     "pilotErrorCode": 0,
[2025-10-11 05:25:18]     "pilotErrorDiag": "",
[2025-10-11 05:25:18]  *** Listing of results directory ***
[2025-10-11 05:25:18] total 408992
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc      5112 Oct 10 06:02 queuedata.json
[2025-10-11 05:25:18] -rwx------. 1 boinc boinc     36292 Oct 10 06:04 runpilot2-wrapper.sh
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc    557409 Oct 10 06:04 pilot3.tar.gz
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc       100 Oct 11 04:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 05:25:18] -rwxr-xr-x. 1 boinc boinc      7986 Oct 11 04:28 run_atlas
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc       105 Oct 11 04:28 job.xml
[2025-10-11 05:25:18] -rw-r--r--. 2 boinc boinc 222047775 Oct 11 04:28 EVNT.46676267._001105.pool.root.1
[2025-10-11 05:25:18] -rw-r--r--. 2 boinc boinc     15120 Oct 11 04:28 start_atlas.sh
[2025-10-11 05:25:18] drwxrwx--x. 2 boinc boinc        68 Oct 11 04:28 shared
[2025-10-11 05:25:18] -rw-r--r--. 2 boinc boinc    569676 Oct 11 04:28 input.tar.gz
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc      9628 Oct 11 04:28 init_data.xml
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc         0 Oct 11 04:28 boinc_lockfile
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc      2547 Oct 11 04:28 pandaJob.out
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc    975541 Oct 11 04:28 agis_schedconf.cvmfs.json
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc   1560580 Oct 11 04:28 agis_ddmendpoints.agis.ALL.json
[2025-10-11 05:25:18] drwx------. 5 boinc boinc      4096 Oct 11 04:28 pilot3
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc 191325170 Oct 11 05:23 HITS.46676269._026231.pool.root.1
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc       530 Oct 11 05:23 boinc_task_state.xml
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc      1030 Oct 11 05:23 memory_monitor_summary.json
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc    260384 Oct 11 05:23 log.46676269._026231.job.log.tgz.1
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc      7795 Oct 11 05:24 heartbeat.json
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc      8192 Oct 11 05:25 boinc_mmap_file
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc        27 Oct 11 05:25 wrapper_checkpoint.txt
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc        95 Oct 11 05:25 pilot_heartbeat.json
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc       822 Oct 11 05:25 pilotlog.txt
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc    512070 Oct 11 05:25 log.46676269._026231.job.log.1
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc       357 Oct 11 05:25 output.list
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc       620 Oct 11 05:25 runtime_log
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc    788480 Oct 11 05:25 result.tar.gz
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc      8661 Oct 11 05:25 runtime_log.err
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc       641 Oct 11 05:25 c8lMDm5yCR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLKbNDmODWjPo.diag
[2025-10-11 05:25:18] -rw-r--r--. 1 boinc boinc     21897 Oct 11 05:25 stderr.txt
[2025-10-11 05:25:18] HITS file was successfully produced:
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc 191325170 Oct 11 05:23 shared/HITS.pool.root.1
[2025-10-11 05:25:18]  *** Contents of shared directory: ***
[2025-10-11 05:25:18] total 405036
[2025-10-11 05:25:18] -rw-r--r--. 2 boinc boinc 222047775 Oct 11 04:28 ATLAS.root_0
[2025-10-11 05:25:18] -rw-r--r--. 2 boinc boinc     15120 Oct 11 04:28 start_atlas.sh
[2025-10-11 05:25:18] -rw-r--r--. 2 boinc boinc    569676 Oct 11 04:28 input.tar.gz
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc 191325170 Oct 11 05:23 HITS.pool.root.1
[2025-10-11 05:25:18] -rw-------. 1 boinc boinc    788480 Oct 11 05:25 result.tar.gz
05:25:20 (4176766): run_atlas exited; CPU time 17690.276204
05:25:20 (4176766): called boinc_finish(0)

</stderr_txt>
]]>

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