Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
11:20:14 (1240636): wrapper (7.7.26015): starting
11:20:14 (1240636): wrapper: running run_atlas (--nthreads 4)
[2025-10-10 11:20:14] Arguments: --nthreads 4
[2025-10-10 11:20:14] Threads: 4
[2025-10-10 11:20:14] Checking for CVMFS
[2025-10-10 11:20:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 11:20:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 11:20:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 11:20:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 11:20:15] 2.11.0.0 1124791 741 51772 151550 0 57 2839926 4096001 0 130560 0 307445 99.981 25180 504 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 11:20:15] CVMFS is ok
[2025-10-10 11:20:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 11:20:15] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 11:20:15] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 11:20:15] Further information can be found at the LHC@home message board.
[2025-10-10 11:20:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 11:20:15] Checking for apptainer binary...
[2025-10-10 11:20:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 11:20:15] Running /usr/bin/apptainer --version
[2025-10-10 11:20:15] apptainer version 1.4.2-1.fc42
[2025-10-10 11:20:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 11:20:15] fedora
[2025-10-10 11:20:15] apptainer works
[2025-10-10 11:20:15] Set ATHENA_PROC_NUMBER=4
[2025-10-10 11:20:15] Set ATHENA_CORE_NUMBER=4
[2025-10-10 11:20:15] Starting ATLAS job with PandaID=6837378042
[2025-10-10 11:20:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 15:32:11]  *** The last 200 lines of the pilot log: ***
[2025-10-10 15:32:11] 2025-10-10 19:31:37,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 15:32:11] 2025-10-10 19:31:38,565 | INFO     | time since job start (15073s) is within the limit (172800.0s)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,706 | INFO     | monitor loop #1115: job 0:6837378042 is in state 'finished'
[2025-10-10 15:32:11] 2025-10-10 19:31:39,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,857 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 15:32:11] 2025-10-10 19:31:39,858 | INFO     | found 2 cores (2 cores per socket, 1 socket) HT, CPU MHz: 3004.07625
[2025-10-10 15:32:11] 2025-10-10 19:31:39,859 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6837378042/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,860 | INFO     | extracted standard info from prmon json
[2025-10-10 15:32:11] 2025-10-10 19:31:39,860 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 15:32:11] 2025-10-10 19:31:39,860 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 15:32:11] 2025-10-10 19:31:39,860 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 15:32:11] 2025-10-10 19:31:39,860 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:32:11] 2025-10-10 19:31:39,864 | INFO     | fitting pss+swap vs Time
[2025-10-10 15:32:11] 2025-10-10 19:31:39,865 | INFO     | sum of square deviations: 4672638308.0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,866 | INFO     | sum of deviations: 21303628958.999996
[2025-10-10 15:32:11] 2025-10-10 19:31:39,866 | INFO     | mean x: 1760117150.0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,866 | INFO     | mean y: 2353508.4696356277
[2025-10-10 15:32:11] 2025-10-10 19:31:39,867 | INFO     | -- intersect: -8022423976.184873
[2025-10-10 15:32:11] 2025-10-10 19:31:39,867 | INFO     | intersect: -8022423976.184873
[2025-10-10 15:32:11] 2025-10-10 19:31:39,867 | INFO     | chi2: 1.2789777168275935
[2025-10-10 15:32:11] 2025-10-10 19:31:39,867 | INFO     | sum of square deviations: 4394577280.5
[2025-10-10 15:32:11] 2025-10-10 19:31:39,869 | INFO     | sum of deviations: 20709443757.999996
[2025-10-10 15:32:11] 2025-10-10 19:31:39,869 | INFO     | mean x: 1760116997.5
[2025-10-10 15:32:11] 2025-10-10 19:31:39,869 | INFO     | mean y: 2353182.5537190083
[2025-10-10 15:32:11] 2025-10-10 19:31:39,869 | INFO     | -- intersect: -8292197496.75048
[2025-10-10 15:32:11] 2025-10-10 19:31:39,869 | INFO     | intersect: -8292197496.75048
[2025-10-10 15:32:11] 2025-10-10 19:31:39,869 | INFO     | chi2: 1.2794582946645858
[2025-10-10 15:32:11] 2025-10-10 19:31:39,869 | INFO     | current chi2=1.2794582946645858 (change=-0.037575153239129716 %)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,870 | INFO     | right removable region: 241
[2025-10-10 15:32:11] 2025-10-10 19:31:39,870 | INFO     | sum of square deviations: 4394577280.5
[2025-10-10 15:32:11] 2025-10-10 19:31:39,871 | INFO     | sum of deviations: -7270452719.499997
[2025-10-10 15:32:11] 2025-10-10 19:31:39,871 | INFO     | mean x: 1760117302.5
[2025-10-10 15:32:11] 2025-10-10 19:31:39,871 | INFO     | mean y: 2368998.491735537
[2025-10-10 15:32:11] 2025-10-10 19:31:39,872 | INFO     | -- intersect: 2914332723.7363496
[2025-10-10 15:32:11] 2025-10-10 19:31:39,872 | INFO     | intersect: 2914332723.7363496
[2025-10-10 15:32:11] 2025-10-10 19:31:39,872 | INFO     | chi2: 0.011297877767179417
[2025-10-10 15:32:11] 2025-10-10 19:31:39,872 | INFO     | current chi2=0.011297877767179417 (change=99.11664780249627 %)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,872 | INFO     | sum of square deviations: 4127772278.0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,873 | INFO     | sum of deviations: -5908681368.999999
[2025-10-10 15:32:11] 2025-10-10 19:31:39,873 | INFO     | mean x: 1760117455.0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,873 | INFO     | mean y: 2368217.5485232067
[2025-10-10 15:32:11] 2025-10-10 19:31:39,873 | INFO     | -- intersect: 2521880562.9943867
[2025-10-10 15:32:11] 2025-10-10 19:31:39,873 | INFO     | intersect: 2521880562.9943867
[2025-10-10 15:32:11] 2025-10-10 19:31:39,874 | INFO     | chi2: 0.010608623007309161
[2025-10-10 15:32:11] 2025-10-10 19:31:39,874 | INFO     | current chi2=0.010608623007309161 (change=6.100745414971259 %)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,874 | INFO     | left removable region: 20
[2025-10-10 15:32:11] 2025-10-10 19:31:39,874 | INFO     | sum of square deviations: 3346927870.0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | sum of deviations: -1302190973.0000002
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | mean x: 1760117577.0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | mean y: 2365193.045248869
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | -- intersect: 687175057.2590339
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | intersect: 687175057.2590339
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | chi2: 0.003733346002581411
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | -- intersect: 687175057.2590339
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | current memory leak: -0.39 B/s (using 221 data points, chi2=0.00)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | could have reported an average CPU frequency of 2836 MHz (12 samples)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | ..............................
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | . Timing measurements:
[2025-10-10 15:32:11] 2025-10-10 19:31:39,875 | INFO     | . get job = 0 s
[2025-10-10 15:32:11] 2025-10-10 19:31:39,876 | INFO     | . initial setup = 4 s
[2025-10-10 15:32:11] 2025-10-10 19:31:39,876 | INFO     | . payload setup = 3 s
[2025-10-10 15:32:11] 2025-10-10 19:31:39,876 | INFO     | . stage-in = 0 s
[2025-10-10 15:32:11] 2025-10-10 19:31:39,876 | INFO     | . payload execution = 15043 s
[2025-10-10 15:32:11] 2025-10-10 19:31:39,876 | INFO     | . stage-out = 3 s
[2025-10-10 15:32:11] 2025-10-10 19:31:39,876 | INFO     | . log creation = 0 s
[2025-10-10 15:32:11] 2025-10-10 19:31:39,876 | INFO     | ..............................
[2025-10-10 15:32:11] 2025-10-10 19:31:39,920 | INFO     | 
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | job summary report
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | --------------------------------------------------
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | PanDA job id: 6837378042
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | task id: 46676269
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | errors: (none)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | pilot state: finished 
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | transexitcode: 0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | exeerrorcode: 0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | exeerrordiag: 
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | exitcode: 0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | exitmsg: OK
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | cpuconsumptiontime: 43491 s
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | nevents: 400
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | neventsw: 0
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | pid: 1250697
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | pgrp: 1250697
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | corecount: 4
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | event service: False
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | sizes: {0: 2348857, 1: 2348857, 3: 2349147, 11: 2349175, 15049: 2380304, 15050: 2380303, 15053: 2389541, 15061: 2389679}
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | --------------------------------------------------
[2025-10-10 15:32:11] 2025-10-10 19:31:39,921 | INFO     | 
[2025-10-10 15:32:11] 2025-10-10 19:31:39,922 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-10 15:32:11] 2025-10-10 19:31:39,935 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,935 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,935 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,935 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 15:32:11] 2025-10-10 19:31:39,936 | INFO     | job 6837378042 has completed (purged errors)
[2025-10-10 15:32:11] 2025-10-10 19:31:39,937 | INFO     | overall cleanup function is called
[2025-10-10 15:32:11] 2025-10-10 19:31:40,943 | INFO     | --- collectZombieJob: --- 10, [1250697]
[2025-10-10 15:32:11] 2025-10-10 19:31:40,943 | INFO     | zombie collector waiting for pid 1250697
[2025-10-10 15:32:11] 2025-10-10 19:31:40,943 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 15:32:11] 2025-10-10 19:31:40,943 | INFO     | collected zombie processes
[2025-10-10 15:32:11] 2025-10-10 19:31:40,944 | INFO     | will attempt to kill all subprocesses of pid=1250697
[2025-10-10 15:32:11] 2025-10-10 19:31:40,998 | INFO     | process IDs to be killed: [1250697] (in reverse order)
[2025-10-10 15:32:11] 2025-10-10 19:31:41,025 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 15:32:11] 2025-10-10 19:31:41,025 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 15:32:11] 2025-10-10 19:31:41,028 | INFO     | did not find any defunct processes belonging to 1250697
[2025-10-10 15:32:11] 2025-10-10 19:31:41,030 | INFO     | did not find any defunct processes belonging to 1250697
[2025-10-10 15:32:11] 2025-10-10 19:31:41,030 | INFO     | ready for new job
[2025-10-10 15:32:11] 2025-10-10 19:31:41,031 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 15:32:11] 2025-10-10 19:31:41,032 | INFO     | ***************************************
[2025-10-10 15:32:11] 2025-10-10 19:31:41,032 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 15:32:11] 2025-10-10 19:31:41,032 | INFO     | ***************************************
[2025-10-10 15:32:11] 2025-10-10 19:31:41,032 | INFO     | 
[2025-10-10 15:32:11] 2025-10-10 19:31:41,033 | INFO     | architecture information:
[2025-10-10 15:32:11] 2025-10-10 19:31:41,033 | INFO     | executing command: cat /etc/os-release
[2025-10-10 15:32:11] 2025-10-10 19:31:41,044 | INFO     | cat /etc/os-release:
[2025-10-10 15:32:11] NAME="CentOS Linux"
[2025-10-10 15:32:11] VERSION="7 (Core)"
[2025-10-10 15:32:11] ID="centos"
[2025-10-10 15:32:11] ID_LIKE="rhel fedora"
[2025-10-10 15:32:11] VERSION_ID="7"
[2025-10-10 15:32:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 15:32:11] ANSI_COLOR="0;31"
[2025-10-10 15:32:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 15:32:11] HOME_URL="https://www.centos.org/"
[2025-10-10 15:32:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 15:32:11] 
[2025-10-10 15:32:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 15:32:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 15:32:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 15:32:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 15:32:11] 
[2025-10-10 15:32:11] 2025-10-10 19:31:41,044 | INFO     | ***************************************
[2025-10-10 15:32:11] 2025-10-10 19:31:41,547 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-10 15:32:11] 2025-10-10 19:31:41,558 | INFO     | sufficient remaining disk space (340587970560 B)
[2025-10-10 15:32:11] 2025-10-10 19:31:41,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 15:32:11] 2025-10-10 19:31:41,558 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 15:32:11] 2025-10-10 19:31:41,558 | INFO     | update_server=False
[2025-10-10 15:32:11] 2025-10-10 19:31:41,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 15:32:11] 2025-10-10 19:31:41,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:32:11] 2025-10-10 19:31:41,559 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:32:11] 2025-10-10 19:31:41,559 | INFO     | aborting loop
[2025-10-10 15:32:11] 2025-10-10 19:31:41,864 | INFO     | all job control threads have been joined
[2025-10-10 15:32:11] 2025-10-10 19:31:42,462 | INFO     | all data control threads have been joined
[2025-10-10 15:32:11] 2025-10-10 19:31:42,531 | INFO     | all payload control threads have been joined
[2025-10-10 15:32:11] 2025-10-10 19:31:42,564 | INFO     | [job] retrieve thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:42,564 | INFO     | [job] queue monitor thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:42,564 | INFO     | [job] job monitor thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:42,728 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:42,764 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:42,765 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:42,869 | INFO     | [job] control thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:42,889 | INFO     | [payload] validate_post thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:42,910 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 15:32:11] 2025-10-10 19:31:42,946 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 15:32:11] 2025-10-10 19:31:43,166 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:43,468 | INFO     | [data] control thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:43,536 | INFO     | [payload] control thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:43,652 | INFO     | [data] copytool_in thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:43,818 | INFO     | [payload] failed_post thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:43,870 | INFO     | [job] validate thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:44,916 | INFO     | [data] copytool_out thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:46,951 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 15:32:11] 2025-10-10 19:31:49,903 | INFO     | [monitor] cgroup control has ended
[2025-10-10 15:32:11] 2025-10-10 19:31:51,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858317518656)>', '<ExcThread(monitor, started 139857540142848)>']
[2025-10-10 15:32:11] 2025-10-10 19:31:56,284 | INFO     | all workflow threads have been joined
[2025-10-10 15:32:11] 2025-10-10 19:31:56,284 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 15:32:11] 2025-10-10 19:31:56,284 | INFO     | traces error code: 0
[2025-10-10 15:32:11] 2025-10-10 19:31:56,284 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 15:32:11] 2025-10-10 19:32:11,700 | INFO     | PID=1244309 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 15:32:11] 2025-10-10 19:32:11,700 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 15:32:11] 2025-10-10 19:32:11,701 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 15:32:11] 2025-10-10 19:32:11,701 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 15:32:11] 2025-10-10 19:32:11,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 15:32:11] 2025-10-10 19:32:11,701 | INFO     | [monitor] control thread has ended
[2025-10-10 15:32:11] 2025-10-10 19:32:11,776 [wrapper] ==== pilot stdout END ====
[2025-10-10 15:32:11] 2025-10-10 19:32:11,778 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 15:32:11] 2025-10-10 19:32:11,780 [wrapper] pilotpid: 1244309
[2025-10-10 15:32:11] 2025-10-10 19:32:11,782 [wrapper] Pilot exit status: 0
[2025-10-10 15:32:11] 2025-10-10 19:32:11,790 [wrapper] pandaids: 6837378042
[2025-10-10 15:32:11] 2025-10-10 19:32:11,812 [wrapper] cleanup supervisor_pilot 1274645 1244310
[2025-10-10 15:32:11] 2025-10-10 19:32:11,814 [wrapper] Test setup, not cleaning
[2025-10-10 15:32:11] 2025-10-10 19:32:11,816 [wrapper] apfmon messages muted
[2025-10-10 15:32:11] 2025-10-10 19:32:11,818 [wrapper] ==== wrapper stdout END ====
[2025-10-10 15:32:11] 2025-10-10 19:32:11,820 [wrapper] ==== wrapper stderr END ====
[2025-10-10 15:32:11]  *** Error codes and diagnostics ***
[2025-10-10 15:32:11]     "exeErrorCode": 0,
[2025-10-10 15:32:11]     "exeErrorDiag": "",
[2025-10-10 15:32:11]     "pilotErrorCode": 0,
[2025-10-10 15:32:11]     "pilotErrorDiag": "",
[2025-10-10 15:32:11]  *** Listing of results directory ***
[2025-10-10 15:32:11] total 410332
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc    557409 Oct  9 21:20 pilot3.tar.gz
[2025-10-10 15:32:11] -rwx------. 1 boinc boinc     36292 Oct  9 21:28 runpilot2-wrapper.sh
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc      5112 Oct  9 21:28 queuedata.json
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc       100 Oct 10 11:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 15:32:11] -rwxr-xr-x. 1 boinc boinc      7986 Oct 10 11:20 run_atlas
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc       105 Oct 10 11:20 job.xml
[2025-10-10 15:32:11] -rw-r--r--. 2 boinc boinc 220998916 Oct 10 11:20 EVNT.46676267._001212.pool.root.1
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc      6745 Oct 10 11:20 init_data.xml
[2025-10-10 15:32:11] drwxrwx--x. 2 boinc boinc      4096 Oct 10 11:20 shared
[2025-10-10 15:32:11] -rw-r--r--. 2 boinc boinc    569675 Oct 10 11:20 input.tar.gz
[2025-10-10 15:32:11] -rw-r--r--. 2 boinc boinc     15120 Oct 10 11:20 start_atlas.sh
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc         0 Oct 10 11:20 boinc_lockfile
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc      2550 Oct 10 11:20 pandaJob.out
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc    975533 Oct 10 11:20 agis_schedconf.cvmfs.json
[2025-10-10 15:32:11] drwx------. 5 boinc boinc      4096 Oct 10 11:20 pilot3
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc 190299789 Oct 10 15:31 HITS.46676269._029701.pool.root.1
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc       530 Oct 10 15:31 boinc_task_state.xml
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc      1021 Oct 10 15:31 memory_monitor_summary.json
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc   1560580 Oct 10 15:31 agis_ddmendpoints.agis.ALL.json
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc    403549 Oct 10 15:31 log.46676269._029701.job.log.tgz.1
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc      7764 Oct 10 15:31 heartbeat.json
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc        28 Oct 10 15:31 wrapper_checkpoint.txt
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc      8192 Oct 10 15:31 boinc_mmap_file
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc       747 Oct 10 15:32 pilotlog.txt
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc        95 Oct 10 15:32 pilot_heartbeat.json
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc   2088932 Oct 10 15:32 log.46676269._029701.job.log.1
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc       357 Oct 10 15:32 output.list
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc       620 Oct 10 15:32 runtime_log
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc   2508800 Oct 10 15:32 result.tar.gz
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc      8659 Oct 10 15:32 runtime_log.err
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc       648 Oct 10 15:32 B4JODms6GR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm93OMDmRyBuWn.diag
[2025-10-10 15:32:11] -rw-r--r--. 1 boinc boinc     21236 Oct 10 15:32 stderr.txt
[2025-10-10 15:32:11] HITS file was successfully produced:
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc 190299789 Oct 10 15:31 shared/HITS.pool.root.1
[2025-10-10 15:32:11]  *** Contents of shared directory: ***
[2025-10-10 15:32:11] total 404696
[2025-10-10 15:32:11] -rw-r--r--. 2 boinc boinc 220998916 Oct 10 11:20 ATLAS.root_0
[2025-10-10 15:32:11] -rw-r--r--. 2 boinc boinc    569675 Oct 10 11:20 input.tar.gz
[2025-10-10 15:32:11] -rw-r--r--. 2 boinc boinc     15120 Oct 10 11:20 start_atlas.sh
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc 190299789 Oct 10 15:31 HITS.pool.root.1
[2025-10-10 15:32:11] -rw-------. 1 boinc boinc   2508800 Oct 10 15:32 result.tar.gz
15:32:13 (1240636): run_atlas exited; CPU time 43652.725943
15:32:13 (1240636): called boinc_finish(0)

</stderr_txt>
]]>

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