Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:36:32 (4016820): wrapper (7.7.26015): starting
15:36:32 (4016820): wrapper: running run_atlas (--nthreads 2)
[2025-10-10 15:36:32] Arguments: --nthreads 2
[2025-10-10 15:36:32] Threads: 2
[2025-10-10 15:36:32] Checking for CVMFS
[2025-10-10 15:36:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 15:36:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 15:36:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 15:36:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 15:36:33] 2.11.0.0 3088652 236 46220 151547 0 186 4144668 4194304 0 130560 0 2915354 99.999 10784 1121 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 15:36:33] CVMFS is ok
[2025-10-10 15:36:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 15:36:33] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 15:36:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 15:36:33] Further information can be found at the LHC@home message board.
[2025-10-10 15:36:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 15:36:33] Checking for apptainer binary...
[2025-10-10 15:36:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 15:36:33] Running /usr/bin/apptainer --version
[2025-10-10 15:36:34] apptainer version 1.2.2-1.el8
[2025-10-10 15:36:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 15:36:35] bottom
[2025-10-10 15:36:35] apptainer works
[2025-10-10 15:36:35] Set ATHENA_PROC_NUMBER=2
[2025-10-10 15:36:35] Set ATHENA_CORE_NUMBER=2
[2025-10-10 15:36:35] Starting ATLAS job with PandaID=6832861618
[2025-10-10 15:36:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 15:42:59]  *** The last 200 lines of the pilot log: ***
[2025-10-10 15:42:59] 2025-10-10 13:42:38,362 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6832861618/memory_monitor_output.txt
[2025-10-10 15:42:59] 2025-10-10 13:42:38,363 | INFO     | memory summary dictionary not yet available
[2025-10-10 15:42:59] 2025-10-10 13:42:38,363 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 15:42:59] 2025-10-10 13:42:38,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | could have reported an average CPU frequency of 1893 MHz (4 samples)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | ..............................
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . Timing measurements:
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . get job = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . initial setup = 2 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . payload setup = 8 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . stage-in = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . payload execution = 131 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . stage-out = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . log creation = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | ..............................
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 15:42:59] 2025-10-10 13:42:38,366 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6832861618/pilotlog.txt
[2025-10-10 15:42:59] 2025-10-10 13:42:38,383 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 15:42:59] - Log from pilotlog.txt -
[2025-10-10 15:42:59] 2025-10-10 13:42:36,690 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,360 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-10 15:42:59] 2025-10-10 13:42:38,361 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1993.131
[2025-10-10 15:42:59] 2025-10-10 13:42:38,362 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6832861618/memory_monitor_output.txt
[2025-10-10 15:42:59] 2025-10-10 13:42:38,363 | INFO     | memory summary dictionary not yet available
[2025-10-10 15:42:59] 2025-10-10 13:42:38,363 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 15:42:59] 2025-10-10 13:42:38,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | could have reported an average CPU frequency of 1893 MHz (4 samples)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | ..............................
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . Timing measurements:
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . get job = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . initial setup = 2 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . payload setup = 8 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . stage-in = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . payload execution = 131 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . stage-out = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . log creation = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | ..............................
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 15:42:59] 2025-10-10 13:42:38,366 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6832861618/pilotlog.txt
[2025-10-10 15:42:59] 2025-10-10 13:42:38,384 | WARNING  | 
[2025-10-10 15:42:59] [begin log extracts]
[2025-10-10 15:42:59] - Log from pilotlog.txt -
[2025-10-10 15:42:59] 2025-10-10 13:42:36,690 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,360 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-10 15:42:59] 2025-10-10 13:42:38,361 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1993.131
[2025-10-10 15:42:59] 2025-10-10 13:42:38,362 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6832861618/memory_monitor_output.txt
[2025-10-10 15:42:59] 2025-10-10 13:42:38,363 | INFO     | memory summary dictionary not yet available
[2025-10-10 15:42:59] 2025-10-10 13:42:38,363 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 15:42:59] 2025-10-10 13:42:38,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | could have reported an average CPU frequency of 1893 MHz (4 samples)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | ..............................
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . Timing measurements:
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . get job = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . initial setup = 2 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,364 | INFO     | . payload setup = 8 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . stage-in = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . payload execution = 131 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . stage-out = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | . log creation = 0 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | ..............................
[2025-10-10 15:42:59] 2025-10-10 13:42:38,365 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 15:42:59] 2025-10-10 13:42:38,366 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6832861618/pilotlog.txt
[2025-10-10 15:42:59] [end log extracts]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,384 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,385 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-10 15:42:59] 2025-10-10 13:42:38,504 | INFO     | 
[2025-10-10 15:42:59] 2025-10-10 13:42:38,504 | INFO     | job summary report
[2025-10-10 15:42:59] 2025-10-10 13:42:38,504 | INFO     | --------------------------------------------------
[2025-10-10 15:42:59] 2025-10-10 13:42:38,505 | INFO     | PanDA job id: 6832861618
[2025-10-10 15:42:59] 2025-10-10 13:42:38,505 | INFO     | task id: 46376905
[2025-10-10 15:42:59] 2025-10-10 13:42:38,505 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 15:39:26,676 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 15:42:59] 2025-10-10 13:42:38,505 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 15:42:59] 2025-10-10 13:42:38,505 | INFO     | pilot state: failed 
[2025-10-10 15:42:59] 2025-10-10 13:42:38,505 | INFO     | transexitcode: 65
[2025-10-10 15:42:59] 2025-10-10 13:42:38,505 | INFO     | exeerrorcode: 65
[2025-10-10 15:42:59] 2025-10-10 13:42:38,506 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,506 | INFO     | exitcode: 65
[2025-10-10 15:42:59] 2025-10-10 13:42:38,506 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,506 | INFO     | cpuconsumptiontime: 155 s
[2025-10-10 15:42:59] 2025-10-10 13:42:38,506 | INFO     | nevents: 0
[2025-10-10 15:42:59] 2025-10-10 13:42:38,506 | INFO     | neventsw: 0
[2025-10-10 15:42:59] 2025-10-10 13:42:38,506 | INFO     | pid: 4026953
[2025-10-10 15:42:59] 2025-10-10 13:42:38,506 | INFO     | pgrp: 4026953
[2025-10-10 15:42:59] 2025-10-10 13:42:38,507 | INFO     | corecount: 2
[2025-10-10 15:42:59] 2025-10-10 13:42:38,507 | INFO     | event service: False
[2025-10-10 15:42:59] 2025-10-10 13:42:38,507 | INFO     | sizes: {0: 2347992, 1: 2348848, 2: 2348848, 8: 2349138, 12: 2349166, 203: 2372480, 204: 2376907, 205: 2376907, 328: 2377073}
[2025-10-10 15:42:59] 2025-10-10 13:42:38,507 | INFO     | --------------------------------------------------
[2025-10-10 15:42:59] 2025-10-10 13:42:38,507 | INFO     | 
[2025-10-10 15:42:59] 2025-10-10 13:42:38,507 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-10 15:42:59] 2025-10-10 13:42:38,515 | INFO     | time since job start (345s) is within the limit (172800.0s)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,533 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,533 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,534 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,534 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,534 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,534 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,534 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,535 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,535 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,535 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,535 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,536 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,536 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,536 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 15:42:59] 2025-10-10 13:42:38,536 | INFO     | job 6832861618 has completed (purged errors)
[2025-10-10 15:42:59] 2025-10-10 13:42:38,536 | INFO     | overall cleanup function is called
[2025-10-10 15:42:59] 2025-10-10 13:42:39,544 | INFO     | --- collectZombieJob: --- 10, [4026953]
[2025-10-10 15:42:59] 2025-10-10 13:42:39,544 | INFO     | zombie collector waiting for pid 4026953
[2025-10-10 15:42:59] 2025-10-10 13:42:39,544 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 15:42:59] 2025-10-10 13:42:39,545 | INFO     | collected zombie processes
[2025-10-10 15:42:59] 2025-10-10 13:42:39,545 | INFO     | will attempt to kill all subprocesses of pid=4026953
[2025-10-10 15:42:59] 2025-10-10 13:42:39,620 | INFO     | process IDs to be killed: [4026953] (in reverse order)
[2025-10-10 15:42:59] 2025-10-10 13:42:39,667 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 15:42:59] 2025-10-10 13:42:39,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 15:42:59] 2025-10-10 13:42:39,671 | INFO     | did not find any defunct processes belonging to 4026953
[2025-10-10 15:42:59] 2025-10-10 13:42:39,675 | INFO     | did not find any defunct processes belonging to 4026953
[2025-10-10 15:42:59] 2025-10-10 13:42:39,675 | INFO     | ready for new job
[2025-10-10 15:42:59] 2025-10-10 13:42:39,675 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 15:42:59] 2025-10-10 13:42:39,677 | INFO     | ***************************************
[2025-10-10 15:42:59] 2025-10-10 13:42:39,677 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-10 15:42:59] 2025-10-10 13:42:39,677 | INFO     | ***************************************
[2025-10-10 15:42:59] 2025-10-10 13:42:39,677 | INFO     | 
[2025-10-10 15:42:59] 2025-10-10 13:42:39,690 | INFO     | architecture information:
[2025-10-10 15:42:59] 2025-10-10 13:42:39,690 | INFO     | executing command: cat /etc/os-release
[2025-10-10 15:42:59] 2025-10-10 13:42:39,708 | INFO     | cat /etc/os-release:
[2025-10-10 15:42:59] NAME="CentOS Linux"
[2025-10-10 15:42:59] VERSION="7 (Core)"
[2025-10-10 15:42:59] ID="centos"
[2025-10-10 15:42:59] ID_LIKE="rhel fedora"
[2025-10-10 15:42:59] VERSION_ID="7"
[2025-10-10 15:42:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 15:42:59] ANSI_COLOR="0;31"
[2025-10-10 15:42:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 15:42:59] HOME_URL="https://www.centos.org/"
[2025-10-10 15:42:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 15:42:59] 
[2025-10-10 15:42:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 15:42:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 15:42:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 15:42:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 15:42:59] 
[2025-10-10 15:42:59] 2025-10-10 13:42:39,709 | INFO     | ***************************************
[2025-10-10 15:42:59] 2025-10-10 13:42:40,212 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-10 15:42:59] 2025-10-10 13:42:40,232 | INFO     | sufficient remaining disk space (212826324992 B)
[2025-10-10 15:42:59] 2025-10-10 13:42:40,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 15:42:59] 2025-10-10 13:42:40,233 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 15:42:59] 2025-10-10 13:42:40,233 | INFO     | update_server=False
[2025-10-10 15:42:59] 2025-10-10 13:42:40,233 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 15:42:59] 2025-10-10 13:42:40,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:42:59] 2025-10-10 13:42:40,234 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-10 15:42:59] 2025-10-10 13:42:40,234 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 15:42:59] 2025-10-10 13:42:40,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 15:42:59] 2025-10-10 13:42:40,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 15:42:59] 2025-10-10 13:42:40,235 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:42:59] 2025-10-10 13:42:40,235 | INFO     | aborting loop
[2025-10-10 15:42:59] 2025-10-10 13:42:40,430 | INFO     | all job control threads have been joined
[2025-10-10 15:42:59] 2025-10-10 13:42:40,471 | INFO     | all data control threads have been joined
[2025-10-10 15:42:59] 2025-10-10 13:42:40,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 15:42:59] 2025-10-10 13:42:41,238 | INFO     | [job] retrieve thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:41,238 | INFO     | [job] queue monitor thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:41,240 | INFO     | [job] job monitor thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:41,436 | INFO     | [job] control thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:41,477 | INFO     | [data] control thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:41,572 | INFO     | all payload control threads have been joined
[2025-10-10 15:42:59] 2025-10-10 13:42:41,596 | INFO     | [payload] validate_post thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:41,760 | INFO     | [job] validate thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:41,842 | INFO     | [data] copytool_in thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:41,858 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:42,221 | INFO     | [payload] failed_post thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:42,239 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:42,432 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:42,574 | INFO     | [payload] control thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:42,653 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:42,837 | INFO     | [data] copytool_out thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:43,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 15:42:59] 2025-10-10 13:42:47,426 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 15:42:59] 2025-10-10 13:42:52,992 | INFO     | [monitor] cgroup control has ended
[2025-10-10 15:42:59] 2025-10-10 13:42:54,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140176968185664)>', '<ExcThread(monitor, started 140176382748416)>']
[2025-10-10 15:42:59] 2025-10-10 13:42:54,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 15:42:59] 2025-10-10 13:42:54,303 | INFO     | [monitor] control thread has ended
[2025-10-10 15:42:59] 2025-10-10 13:42:59,090 | INFO     | all workflow threads have been joined
[2025-10-10 15:42:59] 2025-10-10 13:42:59,090 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 15:42:59] 2025-10-10 13:42:59,090 | INFO     | traces error code: 0
[2025-10-10 15:42:59] 2025-10-10 13:42:59,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 15:42:59] 2025-10-10 13:42:59,255 [wrapper] ==== pilot stdout END ====
[2025-10-10 15:42:59] 2025-10-10 13:42:59,259 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 15:42:59] 2025-10-10 13:42:59,263 [wrapper] pilotpid: 4020444
[2025-10-10 15:42:59] 2025-10-10 13:42:59,266 [wrapper] Pilot exit status: 0
[2025-10-10 15:42:59] 2025-10-10 13:42:59,283 [wrapper] pandaids: 6832861618
[2025-10-10 15:42:59] 2025-10-10 13:42:59,309 [wrapper] cleanup supervisor_pilot 4020450 4020445
[2025-10-10 15:42:59] 2025-10-10 13:42:59,313 [wrapper] Test setup, not cleaning
[2025-10-10 15:42:59] 2025-10-10 13:42:59,317 [wrapper] apfmon messages muted
[2025-10-10 15:42:59] 2025-10-10 13:42:59,322 [wrapper] ==== wrapper stdout END ====
[2025-10-10 15:42:59] 2025-10-10 13:42:59,325 [wrapper] ==== wrapper stderr END ====
[2025-10-10 15:42:59]  *** Error codes and diagnostics ***
[2025-10-10 15:42:59]     "exeErrorCode": 65,
[2025-10-10 15:42:59]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-10 15:42:59]     "pilotErrorCode": 1305,
[2025-10-10 15:42:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-10 15:42:59]  *** Listing of results directory ***
[2025-10-10 15:42:59] total 213880
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc    552446 Oct  6 20:06 pilot3.tar.gz
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc      5112 Oct  6 20:07 queuedata.json
[2025-10-10 15:42:59] -rwx------ 1 boinc boinc     36292 Oct  6 20:07 runpilot2-wrapper.sh
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc       100 Oct 10 15:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 15:42:59] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 15:36 run_atlas
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc       105 Oct 10 15:36 job.xml
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc      5984 Oct 10 15:36 init_data.xml
[2025-10-10 15:42:59] -rw-r--r-- 2 boinc boinc 214793197 Oct 10 15:36 EVNT.46376901._004312.pool.root.1
[2025-10-10 15:42:59] drwxrwx--x 2 boinc boinc        68 Oct 10 15:36 shared
[2025-10-10 15:42:59] -rw-r--r-- 2 boinc boinc    565603 Oct 10 15:36 input.tar.gz
[2025-10-10 15:42:59] -rw-r--r-- 2 boinc boinc     15120 Oct 10 15:36 start_atlas.sh
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc         0 Oct 10 15:36 boinc_lockfile
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc      2521 Oct 10 15:36 pandaJob.out
[2025-10-10 15:42:59] -rw------- 1 boinc boinc    975525 Oct 10 15:36 agis_schedconf.cvmfs.json
[2025-10-10 15:42:59] -rw------- 1 boinc boinc   1560580 Oct 10 15:36 agis_ddmendpoints.agis.ALL.json
[2025-10-10 15:42:59] drwx------ 4 boinc boinc       334 Oct 10 15:36 pilot3
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc       524 Oct 10 15:39 boinc_task_state.xml
[2025-10-10 15:42:59] -rw------- 1 boinc boinc     45803 Oct 10 15:40 log.46376905._116235.job.log.tgz.1
[2025-10-10 15:42:59] -rw------- 1 boinc boinc        95 Oct 10 15:41 pilot_heartbeat.json
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc      8192 Oct 10 15:42 boinc_mmap_file
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc        23 Oct 10 15:42 wrapper_checkpoint.txt
[2025-10-10 15:42:59] -rw------- 1 boinc boinc      8057 Oct 10 15:42 heartbeat.json
[2025-10-10 15:42:59] -rw------- 1 boinc boinc      4553 Oct 10 15:42 pilotlog.txt
[2025-10-10 15:42:59] -rw------- 1 boinc boinc    128146 Oct 10 15:42 log.46376905._116235.job.log.1
[2025-10-10 15:42:59] -rw------- 1 boinc boinc       188 Oct 10 15:42 output.list
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc       620 Oct 10 15:42 runtime_log
[2025-10-10 15:42:59] -rw------- 1 boinc boinc    194560 Oct 10 15:42 result.tar.gz
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc      8505 Oct 10 15:42 runtime_log.err
[2025-10-10 15:42:59] -rw------- 1 boinc boinc       637 Oct 10 15:42 PraKDmZn4P8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxjJMDmMD7ZPn.diag
[2025-10-10 15:42:59] -rw-r--r-- 1 boinc boinc     21864 Oct 10 15:42 stderr.txt
[2025-10-10 15:42:59] No HITS result produced
[2025-10-10 15:42:59]  *** Contents of shared directory: ***
[2025-10-10 15:42:59] total 210524
[2025-10-10 15:42:59] -rw-r--r-- 2 boinc boinc 214793197 Oct 10 15:36 ATLAS.root_0
[2025-10-10 15:42:59] -rw-r--r-- 2 boinc boinc    565603 Oct 10 15:36 input.tar.gz
[2025-10-10 15:42:59] -rw-r--r-- 2 boinc boinc     15120 Oct 10 15:36 start_atlas.sh
[2025-10-10 15:42:59] -rw------- 1 boinc boinc    194560 Oct 10 15:42 result.tar.gz
15:43:00 (4016820): run_atlas exited; CPU time 135.444681
15:43:00 (4016820): called boinc_finish(0)

</stderr_txt>
]]>

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