Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
14:02:17 (1516987): wrapper (7.7.26015): starting
14:02:17 (1516987): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 14:02:17] Arguments: --nthreads 12
[2025-10-10 14:02:17] Threads: 12
[2025-10-10 14:02:17] Checking for CVMFS
[2025-10-10 14:02:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 14:02:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 14:02:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 14:02:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 14:02:18] 2.11.0.0 3299214 276 68692 151547 0 188 4873373 6144001 11301 130560 0 5603663 100.000 9530 257 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-10 14:02:18] CVMFS is ok
[2025-10-10 14:02:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 14:02:18] Checking for apptainer binary...
[2025-10-10 14:02:18] apptainer is not installed, using version from CVMFS
[2025-10-10 14:02:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 14:02:18] radiat0r
[2025-10-10 14:02:18] apptainer works
[2025-10-10 14:02:18] Set ATHENA_PROC_NUMBER=12
[2025-10-10 14:02:18] Set ATHENA_CORE_NUMBER=12
[2025-10-10 14:02:18] Starting ATLAS job with PandaID=6837401155
[2025-10-10 14:02:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 14:55:50]  *** The last 200 lines of the pilot log: ***
[2025-10-10 14:55:50]  status=None
[2025-10-10 14:55:50]  status_code=0
[2025-10-10 14:55:50]  storage_token=
[2025-10-10 14:55:50]  surl=/var/lib/boinc/slots/14/PanDA_Pilot-6837401155/log.46676269._032108.job.log.tgz.1
[2025-10-10 14:55:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/86/log.46676269._032108.job.log.tgz.1
[2025-10-10 14:55:50]  workdir=None
[2025-10-10 14:55:50] ]
[2025-10-10 14:55:50] 2025-10-10 14:55:08,255 | INFO     | transferring file log.46676269._032108.job.log.tgz.1 from /var/lib/boinc/slots/14/PanDA_Pilot-6837401155/log.46676269._032108.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-10 14:55:50] 2025-10-10 14:55:08,255 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/14/PanDA_Pilot-6837401155/log.46676269._032108.job.log.tgz.1 /var/lib/boinc/slots/14/log.46676269._032108.j
[2025-10-10 14:55:50] 2025-10-10 14:55:08,273 | INFO     | adding to output.list: log.46676269._032108.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/86/log.46676269._032108.job.log.tg
[2025-10-10 14:55:50] 2025-10-10 14:55:08,274 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 14:55:50] 2025-10-10 14:55:08,274 | INFO     | summary of transferred files:
[2025-10-10 14:55:50] 2025-10-10 14:55:08,274 | INFO     |  -- lfn=log.46676269._032108.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 14:55:50] 2025-10-10 14:55:08,274 | INFO     | stage-out finished correctly
[2025-10-10 14:55:50] 2025-10-10 14:55:09,407 | INFO     | time since job start (3161s) is within the limit (172800.0s)
[2025-10-10 14:55:50] 2025-10-10 14:55:10,454 | INFO     | monitor loop #223: job 0:6837401155 is in state 'finished'
[2025-10-10 14:55:50] 2025-10-10 14:55:10,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 14:55:50] 2025-10-10 14:55:11,415 | INFO     | time since job start (3163s) is within the limit (172800.0s)
[2025-10-10 14:55:50] 2025-10-10 14:55:11,430 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 14:55:50] 2025-10-10 14:55:11,523 | INFO     | job 6837401155 has state=finished
[2025-10-10 14:55:50] 2025-10-10 14:55:11,524 | INFO     | preparing for final server update for job 6837401155 in state='finished'
[2025-10-10 14:55:50] 2025-10-10 14:55:11,524 | INFO     | this job has now completed (state=finished)
[2025-10-10 14:55:50] 2025-10-10 14:55:11,524 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 14:55:50] 2025-10-10 14:55:11,525 | INFO     | log transfer has been attempted: DONE
[2025-10-10 14:55:50] 2025-10-10 14:55:11,525 | INFO     | job 6837401155 has finished - writing final server update
[2025-10-10 14:55:50] 2025-10-10 14:55:11,525 | INFO     | total number of processed events: 400 (read)
[2025-10-10 14:55:50] 2025-10-10 14:55:11,526 | INFO     | executing command: lscpu
[2025-10-10 14:55:50] 2025-10-10 14:55:11,673 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 14:55:50] 2025-10-10 14:55:12,962 | INFO     | monitor loop #224: job 0:6837401155 is in state 'finished'
[2025-10-10 14:55:50] 2025-10-10 14:55:12,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 14:55:50] 2025-10-10 14:55:13,419 | INFO     | time since job start (3165s) is within the limit (172800.0s)
[2025-10-10 14:55:50] 2025-10-10 14:55:15,423 | INFO     | time since job start (3167s) is within the limit (172800.0s)
[2025-10-10 14:55:50] 2025-10-10 14:55:15,466 | INFO     | monitor loop #225: job 0:6837401155 is in state 'finished'
[2025-10-10 14:55:50] 2025-10-10 14:55:15,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 14:55:50] 2025-10-10 14:55:16,934 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 14:55:50] 2025-10-10 14:55:17,020 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2275.34684375
[2025-10-10 14:55:50] 2025-10-10 14:55:17,060 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6837401155/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 14:55:50] 2025-10-10 14:55:17,061 | INFO     | extracted standard info from prmon json
[2025-10-10 14:55:50] 2025-10-10 14:55:17,061 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 14:55:50] 2025-10-10 14:55:17,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 14:55:50] 2025-10-10 14:55:17,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 14:55:50] 2025-10-10 14:55:17,061 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 14:55:50] 2025-10-10 14:55:17,062 | INFO     | fitting pss+swap vs Time
[2025-10-10 14:55:50] 2025-10-10 14:55:17,063 | INFO     | sum of square deviations: 28242390.0
[2025-10-10 14:55:50] 2025-10-10 14:55:17,063 | INFO     | sum of deviations: 617426872.0
[2025-10-10 14:55:50] 2025-10-10 14:55:17,063 | INFO     | mean x: 1760106622.0
[2025-10-10 14:55:50] 2025-10-10 14:55:17,063 | INFO     | mean y: 2656763.9555555554
[2025-10-10 14:55:50] 2025-10-10 14:55:17,063 | INFO     | -- intersect: -38476279544.478195
[2025-10-10 14:55:50] 2025-10-10 14:55:17,063 | INFO     | intersect: -38476279544.478195
[2025-10-10 14:55:50] 2025-10-10 14:55:17,063 | INFO     | chi2: 0.0006847607553818206
[2025-10-10 14:55:50] 2025-10-10 14:55:17,063 | INFO     | -- intersect: -38476279544.478195
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | current memory leak: 21.86 B/s (using 45 data points, chi2=0.00)
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | could have reported an average CPU frequency of 2239 MHz (5 samples)
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | ..............................
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | . Timing measurements:
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | . get job = 0 s
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | . initial setup = 1 s
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | . payload setup = 5 s
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | . stage-in = 0 s
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | . payload execution = 3132 s
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | . stage-out = 0 s
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | . log creation = 0 s
[2025-10-10 14:55:50] 2025-10-10 14:55:17,064 | INFO     | ..............................
[2025-10-10 14:55:50] 2025-10-10 14:55:17,131 | INFO     | 
[2025-10-10 14:55:50] 2025-10-10 14:55:17,132 | INFO     | job summary report
[2025-10-10 14:55:50] 2025-10-10 14:55:17,132 | INFO     | --------------------------------------------------
[2025-10-10 14:55:50] 2025-10-10 14:55:17,132 | INFO     | PanDA job id: 6837401155
[2025-10-10 14:55:50] 2025-10-10 14:55:17,132 | INFO     | task id: 46676269
[2025-10-10 14:55:50] 2025-10-10 14:55:17,132 | INFO     | errors: (none)
[2025-10-10 14:55:50] 2025-10-10 14:55:17,132 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 14:55:50] 2025-10-10 14:55:17,133 | INFO     | pilot state: finished 
[2025-10-10 14:55:50] 2025-10-10 14:55:17,133 | INFO     | transexitcode: 0
[2025-10-10 14:55:50] 2025-10-10 14:55:17,133 | INFO     | exeerrorcode: 0
[2025-10-10 14:55:50] 2025-10-10 14:55:17,133 | INFO     | exeerrordiag: 
[2025-10-10 14:55:50] 2025-10-10 14:55:17,133 | INFO     | exitcode: 0
[2025-10-10 14:55:50] 2025-10-10 14:55:17,133 | INFO     | exitmsg: OK
[2025-10-10 14:55:50] 2025-10-10 14:55:17,133 | INFO     | cpuconsumptiontime: 33960 s
[2025-10-10 14:55:50] 2025-10-10 14:55:17,133 | INFO     | nevents: 400
[2025-10-10 14:55:50] 2025-10-10 14:55:17,134 | INFO     | neventsw: 0
[2025-10-10 14:55:50] 2025-10-10 14:55:17,134 | INFO     | pid: 1538376
[2025-10-10 14:55:50] 2025-10-10 14:55:17,134 | INFO     | pgrp: 1538376
[2025-10-10 14:55:50] 2025-10-10 14:55:17,134 | INFO     | corecount: 12
[2025-10-10 14:55:50] 2025-10-10 14:55:17,134 | INFO     | event service: False
[2025-10-10 14:55:50] 2025-10-10 14:55:17,134 | INFO     | sizes: {0: 2348858, 5: 2349120, 11: 2349176, 3141: 2374920, 3142: 2374919, 3144: 2383975, 3147: 2384159, 3152: 2384385}
[2025-10-10 14:55:50] 2025-10-10 14:55:17,134 | INFO     | --------------------------------------------------
[2025-10-10 14:55:50] 2025-10-10 14:55:17,135 | INFO     | 
[2025-10-10 14:55:50] 2025-10-10 14:55:17,135 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-10-10 14:55:50] 2025-10-10 14:55:17,160 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,160 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,160 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,160 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,160 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,160 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 14:55:50] 2025-10-10 14:55:17,161 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,162 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 14:55:50] 2025-10-10 14:55:17,162 | INFO     | job 6837401155 has completed (purged errors)
[2025-10-10 14:55:50] 2025-10-10 14:55:17,162 | INFO     | overall cleanup function is called
[2025-10-10 14:55:50] 2025-10-10 14:55:17,268 | INFO     | PID=1521767 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-10 14:55:50] 2025-10-10 14:55:17,269 | INFO     | .. there are 17 such processes running
[2025-10-10 14:55:50] 2025-10-10 14:55:18,173 | INFO     | --- collectZombieJob: --- 10, [1538376]
[2025-10-10 14:55:50] 2025-10-10 14:55:18,173 | INFO     | zombie collector waiting for pid 1538376
[2025-10-10 14:55:50] 2025-10-10 14:55:18,173 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 14:55:50] 2025-10-10 14:55:18,173 | INFO     | collected zombie processes
[2025-10-10 14:55:50] 2025-10-10 14:55:18,173 | INFO     | will attempt to kill all subprocesses of pid=1538376
[2025-10-10 14:55:50] 2025-10-10 14:55:18,693 | INFO     | process IDs to be killed: [1538376] (in reverse order)
[2025-10-10 14:55:50] 2025-10-10 14:55:18,930 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 14:55:50] 2025-10-10 14:55:18,930 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 14:55:50] 2025-10-10 14:55:18,964 | INFO     | did not find any defunct processes belonging to 1538376
[2025-10-10 14:55:50] 2025-10-10 14:55:18,996 | INFO     | did not find any defunct processes belonging to 1538376
[2025-10-10 14:55:50] 2025-10-10 14:55:18,996 | INFO     | ready for new job
[2025-10-10 14:55:50] 2025-10-10 14:55:18,996 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 14:55:50] 2025-10-10 14:55:19,000 | INFO     | ***************************************
[2025-10-10 14:55:50] 2025-10-10 14:55:19,000 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 14:55:50] 2025-10-10 14:55:19,000 | INFO     | ***************************************
[2025-10-10 14:55:50] 2025-10-10 14:55:19,000 | INFO     | 
[2025-10-10 14:55:50] 2025-10-10 14:55:19,043 | INFO     | architecture information:
[2025-10-10 14:55:50] 2025-10-10 14:55:19,043 | INFO     | executing command: cat /etc/os-release
[2025-10-10 14:55:50] 2025-10-10 14:55:19,062 | INFO     | cat /etc/os-release:
[2025-10-10 14:55:50] NAME="CentOS Linux"
[2025-10-10 14:55:50] VERSION="7 (Core)"
[2025-10-10 14:55:50] ID="centos"
[2025-10-10 14:55:50] ID_LIKE="rhel fedora"
[2025-10-10 14:55:50] VERSION_ID="7"
[2025-10-10 14:55:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 14:55:50] ANSI_COLOR="0;31"
[2025-10-10 14:55:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 14:55:50] HOME_URL="https://www.centos.org/"
[2025-10-10 14:55:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 14:55:50] 
[2025-10-10 14:55:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 14:55:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 14:55:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 14:55:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 14:55:50] 
[2025-10-10 14:55:50] 2025-10-10 14:55:19,062 | INFO     | ***************************************
[2025-10-10 14:55:50] 2025-10-10 14:55:19,565 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-10-10 14:55:50] 2025-10-10 14:55:19,593 | INFO     | sufficient remaining disk space (1725561831424 B)
[2025-10-10 14:55:50] 2025-10-10 14:55:19,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 14:55:50] 2025-10-10 14:55:19,593 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 14:55:50] 2025-10-10 14:55:19,593 | INFO     | update_server=False
[2025-10-10 14:55:50] 2025-10-10 14:55:19,593 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 14:55:50] 2025-10-10 14:55:19,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 14:55:50] 2025-10-10 14:55:19,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 14:55:50] 2025-10-10 14:55:19,596 | INFO     | aborting loop
[2025-10-10 14:55:50] 2025-10-10 14:55:19,898 | INFO     | all job control threads have been joined
[2025-10-10 14:55:50] 2025-10-10 14:55:20,016 | INFO     | all data control threads have been joined
[2025-10-10 14:55:50] 2025-10-10 14:55:20,574 | INFO     | all payload control threads have been joined
[2025-10-10 14:55:50] 2025-10-10 14:55:20,599 | INFO     | [job] job monitor thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:20,599 | INFO     | [job] retrieve thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:20,733 | INFO     | [data] copytool_in thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:20,902 | INFO     | [job] control thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:20,937 | INFO     | [payload] failed_post thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:21,022 | INFO     | [data] control thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:21,136 | INFO     | [job] validate thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:21,222 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:21,449 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:21,520 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:21,578 | INFO     | [payload] control thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:21,598 | INFO     | [data] copytool_out thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:21,663 | INFO     | [payload] validate_post thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:21,734 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:22,033 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 14:55:50] 2025-10-10 14:55:22,140 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 14:55:50] 2025-10-10 14:55:23,142 | INFO     | [job] queue monitor thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:26,038 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 14:55:50] 2025-10-10 14:55:32,587 | INFO     | [monitor] cgroup control has ended
[2025-10-10 14:55:50] 2025-10-10 14:55:34,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140335033440064)>', '<ExcThread(monitor, started 140334231189248)>']
[2025-10-10 14:55:50] 2025-10-10 14:55:39,070 | INFO     | all workflow threads have been joined
[2025-10-10 14:55:50] 2025-10-10 14:55:39,071 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 14:55:50] 2025-10-10 14:55:39,071 | INFO     | traces error code: 0
[2025-10-10 14:55:50] 2025-10-10 14:55:39,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 14:55:50] 2025-10-10 14:55:50,036 | INFO     | PID=1521767 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 14:55:50] 2025-10-10 14:55:50,037 | INFO     | .. there are 17 such processes running
[2025-10-10 14:55:50] 2025-10-10 14:55:50,037 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 14:55:50] 2025-10-10 14:55:50,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 14:55:50] 2025-10-10 14:55:50,038 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 14:55:50] 2025-10-10 14:55:50,038 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 14:55:50] 2025-10-10 14:55:50,038 | INFO     | [monitor] control thread has ended
[2025-10-10 14:55:50] 2025-10-10 14:55:50,154 [wrapper] ==== pilot stdout END ====
[2025-10-10 14:55:50] 2025-10-10 14:55:50,158 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 14:55:50] 2025-10-10 14:55:50,162 [wrapper] pilotpid: 1521767
[2025-10-10 14:55:50] 2025-10-10 14:55:50,164 [wrapper] Pilot exit status: 0
[2025-10-10 14:55:50] 2025-10-10 14:55:50,176 [wrapper] pandaids: 6837401155
[2025-10-10 14:55:50] 2025-10-10 14:55:50,316 [wrapper] cleanup supervisor_pilot 1770697 1521768
[2025-10-10 14:55:50] 2025-10-10 14:55:50,321 [wrapper] Test setup, not cleaning
[2025-10-10 14:55:50] 2025-10-10 14:55:50,326 [wrapper] apfmon messages muted
[2025-10-10 14:55:50] 2025-10-10 14:55:50,328 [wrapper] ==== wrapper stdout END ====
[2025-10-10 14:55:50] 2025-10-10 14:55:50,332 [wrapper] ==== wrapper stderr END ====
[2025-10-10 14:55:50]  *** Error codes and diagnostics ***
[2025-10-10 14:55:50]     "exeErrorCode": 0,
[2025-10-10 14:55:50]     "exeErrorDiag": "",
[2025-10-10 14:55:50]     "pilotErrorCode": 0,
[2025-10-10 14:55:50]     "pilotErrorDiag": "",
[2025-10-10 14:55:50]  *** Listing of results directory ***
[2025-10-10 14:55:50] total 410388
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc    557409 Oct 10 04:08 pilot3.tar.gz
[2025-10-10 14:55:50] -rwx------ 1 boinc boinc     36292 Oct 10 04:12 runpilot2-wrapper.sh
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc      5112 Oct 10 04:12 queuedata.json
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc       100 Oct 10 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 14:55:50] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 14:02 run_atlas
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc       105 Oct 10 14:02 job.xml
[2025-10-10 14:55:50] -rw-r--r-- 2 boinc boinc     15120 Oct 10 14:02 start_atlas.sh
[2025-10-10 14:55:50] drwxrwx--x 2 boinc boinc      4096 Oct 10 14:02 shared
[2025-10-10 14:55:50] -rw-r--r-- 2 boinc boinc    569676 Oct 10 14:02 input.tar.gz
[2025-10-10 14:55:50] -rw-r--r-- 2 boinc boinc 220613428 Oct 10 14:02 EVNT.46676267._001308.pool.root.1
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc         0 Oct 10 14:02 boinc_setup_complete
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc      9396 Oct 10 14:02 init_data.xml
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc         0 Oct 10 14:02 boinc_lockfile
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc      2550 Oct 10 14:02 pandaJob.out
[2025-10-10 14:55:50] -rw------- 1 boinc boinc    975525 Oct 10 14:02 agis_schedconf.cvmfs.json
[2025-10-10 14:55:50] -rw------- 1 boinc boinc   1560580 Oct 10 14:02 agis_ddmendpoints.agis.ALL.json
[2025-10-10 14:55:50] drwx------ 5 boinc boinc      4096 Oct 10 14:02 pilot3
[2025-10-10 14:55:50] -rw------- 1 boinc boinc 194031775 Oct 10 14:54 HITS.46676269._032108.pool.root.1
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc       529 Oct 10 14:54 boinc_task_state.xml
[2025-10-10 14:55:50] -rw------- 1 boinc boinc      1028 Oct 10 14:55 memory_monitor_summary.json
[2025-10-10 14:55:50] -rw------- 1 boinc boinc    370194 Oct 10 14:55 log.46676269._032108.job.log.tgz.1
[2025-10-10 14:55:50] -rw------- 1 boinc boinc      7744 Oct 10 14:55 heartbeat.json
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc      8192 Oct 10 14:55 boinc_mmap_file
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc        27 Oct 10 14:55 wrapper_checkpoint.txt
[2025-10-10 14:55:50] -rw------- 1 boinc boinc       823 Oct 10 14:55 pilotlog.txt
[2025-10-10 14:55:50] -rw------- 1 boinc boinc        95 Oct 10 14:55 pilot_heartbeat.json
[2025-10-10 14:55:50] -rw------- 1 boinc boinc    471984 Oct 10 14:55 log.46676269._032108.job.log.1
[2025-10-10 14:55:50] -rw------- 1 boinc boinc       357 Oct 10 14:55 output.list
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc       620 Oct 10 14:55 runtime_log
[2025-10-10 14:55:50] -rw------- 1 boinc boinc    860160 Oct 10 14:55 result.tar.gz
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc      8672 Oct 10 14:55 runtime_log.err
[2025-10-10 14:55:50] -rw------- 1 boinc boinc       643 Oct 10 14:55 15DMDmsfJR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZJcNDmGF8WRm.diag
[2025-10-10 14:55:50] -rw-r--r-- 1 boinc boinc     21815 Oct 10 14:55 stderr.txt
[2025-10-10 14:55:50] HITS file was successfully produced:
[2025-10-10 14:55:50] -rw------- 1 boinc boinc 194031775 Oct 10 14:54 shared/HITS.pool.root.1
[2025-10-10 14:55:50]  *** Contents of shared directory: ***
[2025-10-10 14:55:50] total 406356
[2025-10-10 14:55:50] -rw-r--r-- 2 boinc boinc     15120 Oct 10 14:02 start_atlas.sh
[2025-10-10 14:55:50] -rw-r--r-- 2 boinc boinc    569676 Oct 10 14:02 input.tar.gz
[2025-10-10 14:55:50] -rw-r--r-- 2 boinc boinc 220613428 Oct 10 14:02 ATLAS.root_0
[2025-10-10 14:55:50] -rw------- 1 boinc boinc 194031775 Oct 10 14:54 HITS.pool.root.1
[2025-10-10 14:55:50] -rw------- 1 boinc boinc    860160 Oct 10 14:55 result.tar.gz
14:55:51 (1516987): run_atlas exited; CPU time 34166.144743
14:55:51 (1516987): called boinc_finish(0)

</stderr_txt>
]]>

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