Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:16:04 (236819): wrapper (7.7.26015): starting
09:16:04 (236819): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 09:16:04] Arguments: --nthreads 4
[2025-10-11 09:16:04] Threads: 4
[2025-10-11 09:16:04] Checking for CVMFS
[2025-10-11 09:16:04] No cvmfs_config command found, will try listing directly
[2025-10-11 09:16:04] CVMFS is ok
[2025-10-11 09:16:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 09:16:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 09:16:04] Further information can be found at the LHC@home message board.
[2025-10-11 09:16:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 09:16:04] Checking for apptainer binary...
[2025-10-11 09:16:04] which: no apptainer in ((null))
[2025-10-11 09:16:04] apptainer is not installed, using version from CVMFS
[2025-10-11 09:16:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 09:16:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-10-11 09:16:04] apptainer works
[2025-10-11 09:16:04] Set ATHENA_PROC_NUMBER=4
[2025-10-11 09:16:04] Set ATHENA_CORE_NUMBER=4
[2025-10-11 09:16:04] Starting ATLAS job with PandaID=6837398278
[2025-10-11 09:16:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 13:27:32]  *** The last 200 lines of the pilot log: ***
[2025-10-11 13:27:32] 2025-10-11 10:51:01,978 | INFO     | time since job start (12888s) is within the limit (172800.0s)
[2025-10-11 13:27:32] 2025-10-11 10:51:01,978 | INFO     | 12889s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 13:27:32] 2025-10-11 10:51:03,628 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 13:27:32] 2025-10-11 10:51:03,636 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2593.7083000000002
[2025-10-11 13:27:32] 2025-10-11 10:51:03,644 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6837398278/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 13:27:32] 2025-10-11 10:51:03,645 | INFO     | extracted standard info from prmon json
[2025-10-11 13:27:32] 2025-10-11 10:51:03,645 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 13:27:32] 2025-10-11 10:51:03,645 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 13:27:32] 2025-10-11 10:51:03,646 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 13:27:32] 2025-10-11 10:51:03,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 13:27:32] 2025-10-11 10:51:03,650 | INFO     | fitting pss+swap vs Time
[2025-10-11 13:27:32] 2025-10-11 10:51:03,651 | INFO     | sum of square deviations: 2912836010.0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,652 | INFO     | sum of deviations: -3472576646.000001
[2025-10-11 13:27:32] 2025-10-11 10:51:03,653 | INFO     | mean x: 1760173403.0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,653 | INFO     | mean y: 2356711.606635071
[2025-10-11 13:27:32] 2025-10-11 10:51:03,653 | INFO     | -- intersect: 2100771119.8273532
[2025-10-11 13:27:32] 2025-10-11 10:51:03,653 | INFO     | intersect: 2100771119.8273532
[2025-10-11 13:27:32] 2025-10-11 10:51:03,653 | INFO     | chi2: 1.4174797603410538
[2025-10-11 13:27:32] 2025-10-11 10:51:03,654 | INFO     | sum of square deviations: 2710627567.5
[2025-10-11 13:27:32] 2025-10-11 10:51:03,655 | INFO     | sum of deviations: -3105643833.999998
[2025-10-11 13:27:32] 2025-10-11 10:51:03,656 | INFO     | mean x: 1760173250.5
[2025-10-11 13:27:32] 2025-10-11 10:51:03,656 | INFO     | mean y: 2356988.3883495145
[2025-10-11 13:27:32] 2025-10-11 10:51:03,656 | INFO     | -- intersect: 2019038021.1237915
[2025-10-11 13:27:32] 2025-10-11 10:51:03,656 | INFO     | intersect: 2019038021.1237915
[2025-10-11 13:27:32] 2025-10-11 10:51:03,656 | INFO     | chi2: 1.4176863000437774
[2025-10-11 13:27:32] 2025-10-11 10:51:03,657 | INFO     | current chi2=1.4176863000437774 (change=-0.014570910181733879 %)
[2025-10-11 13:27:32] 2025-10-11 10:51:03,657 | INFO     | right removable region: 205
[2025-10-11 13:27:32] 2025-10-11 10:51:03,657 | INFO     | sum of square deviations: 2710627567.5
[2025-10-11 13:27:32] 2025-10-11 10:51:03,659 | INFO     | sum of deviations: -30493434692.000004
[2025-10-11 13:27:32] 2025-10-11 10:51:03,659 | INFO     | mean x: 1760173555.5
[2025-10-11 13:27:32] 2025-10-11 10:51:03,659 | INFO     | mean y: 2376840.3980582524
[2025-10-11 13:27:32] 2025-10-11 10:51:03,659 | INFO     | -- intersect: 19803598522.330463
[2025-10-11 13:27:32] 2025-10-11 10:51:03,659 | INFO     | intersect: 19803598522.330463
[2025-10-11 13:27:32] 2025-10-11 10:51:03,660 | INFO     | chi2: 0.07892831955936754
[2025-10-11 13:27:32] 2025-10-11 10:51:03,660 | INFO     | current chi2=0.07892831955936754 (change=94.43178507604392 %)
[2025-10-11 13:27:32] 2025-10-11 10:51:03,660 | INFO     | sum of square deviations: 2518000700.0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,661 | INFO     | sum of deviations: -30209763891.000008
[2025-10-11 13:27:32] 2025-10-11 10:51:03,662 | INFO     | mean x: 1760173708.0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,662 | INFO     | mean y: 2376595.462686567
[2025-10-11 13:27:32] 2025-10-11 10:51:03,662 | INFO     | -- intersect: 21120095953.45413
[2025-10-11 13:27:32] 2025-10-11 10:51:03,662 | INFO     | intersect: 21120095953.45413
[2025-10-11 13:27:32] 2025-10-11 10:51:03,662 | INFO     | chi2: 0.07194691191999988
[2025-10-11 13:27:32] 2025-10-11 10:51:03,662 | INFO     | current chi2=0.07194691191999988 (change=8.84525057462606 %)
[2025-10-11 13:27:32] 2025-10-11 10:51:03,663 | INFO     | left removable region: 20
[2025-10-11 13:27:32] 2025-10-11 10:51:03,663 | INFO     | sum of square deviations: 1963274020.0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,664 | INFO     | sum of deviations: -23676581479.999996
[2025-10-11 13:27:32] 2025-10-11 10:51:03,664 | INFO     | mean x: 1760173830.0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,664 | INFO     | mean y: 2372654.0486486484
[2025-10-11 13:27:32] 2025-10-11 10:51:03,664 | INFO     | -- intersect: 21229617898.682743
[2025-10-11 13:27:32] 2025-10-11 10:51:03,665 | INFO     | intersect: 21229617898.682743
[2025-10-11 13:27:32] 2025-10-11 10:51:03,665 | INFO     | chi2: 0.06911258200107041
[2025-10-11 13:27:32] 2025-10-11 10:51:03,665 | INFO     | -- intersect: 21229617898.682743
[2025-10-11 13:27:32] 2025-10-11 10:51:03,665 | INFO     | current memory leak: -12.06 B/s (using 185 data points, chi2=0.07)
[2025-10-11 13:27:32] 2025-10-11 10:51:03,666 | INFO     | could have reported an average CPU frequency of 2582 MHz (11 samples)
[2025-10-11 13:27:32] 2025-10-11 10:51:03,666 | INFO     | ..............................
[2025-10-11 13:27:32] 2025-10-11 10:51:03,666 | INFO     | . Timing measurements:
[2025-10-11 13:27:32] 2025-10-11 10:51:03,666 | INFO     | . get job = 0 s
[2025-10-11 13:27:32] 2025-10-11 10:51:03,666 | INFO     | . initial setup = 1 s
[2025-10-11 13:27:32] 2025-10-11 10:51:03,666 | INFO     | . payload setup = 5 s
[2025-10-11 13:27:32] 2025-10-11 10:51:03,666 | INFO     | . stage-in = 0 s
[2025-10-11 13:27:32] 2025-10-11 10:51:03,666 | INFO     | . payload execution = 12854 s
[2025-10-11 13:27:32] 2025-10-11 10:51:03,667 | INFO     | . stage-out = 1 s
[2025-10-11 13:27:32] 2025-10-11 10:51:03,667 | INFO     | . log creation = 0 s
[2025-10-11 13:27:32] 2025-10-11 10:51:03,667 | INFO     | ..............................
[2025-10-11 13:27:32] 2025-10-11 10:51:03,776 | INFO     | 
[2025-10-11 13:27:32] 2025-10-11 10:51:03,777 | INFO     | job summary report
[2025-10-11 13:27:32] 2025-10-11 10:51:03,777 | INFO     | --------------------------------------------------
[2025-10-11 13:27:32] 2025-10-11 10:51:03,777 | INFO     | PanDA job id: 6837398278
[2025-10-11 13:27:32] 2025-10-11 10:51:03,777 | INFO     | task id: 46676269
[2025-10-11 13:27:32] 2025-10-11 10:51:03,777 | INFO     | errors: (none)
[2025-10-11 13:27:32] 2025-10-11 10:51:03,777 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 13:27:32] 2025-10-11 10:51:03,777 | INFO     | pilot state: finished 
[2025-10-11 13:27:32] 2025-10-11 10:51:03,777 | INFO     | transexitcode: 0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,777 | INFO     | exeerrorcode: 0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | exeerrordiag: 
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | exitcode: 0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | exitmsg: OK
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | cpuconsumptiontime: 49582 s
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | nevents: 400
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | neventsw: 0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | pid: 247443
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | pgrp: 247443
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | corecount: 4
[2025-10-11 13:27:32] 2025-10-11 10:51:03,778 | INFO     | event service: False
[2025-10-11 13:27:32] 2025-10-11 10:51:03,779 | INFO     | sizes: {0: 2348868, 4: 2349130, 11: 2349158, 12863: 2379265, 12865: 2388285, 12868: 2388341, 12875: 2388663}
[2025-10-11 13:27:32] 2025-10-11 10:51:03,779 | INFO     | --------------------------------------------------
[2025-10-11 13:27:32] 2025-10-11 10:51:03,779 | INFO     | 
[2025-10-11 13:27:32] 2025-10-11 10:51:03,779 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-10-11 13:27:32] 2025-10-11 10:51:03,797 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,797 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,797 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,798 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,798 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,798 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,798 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,798 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,798 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,799 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,799 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,799 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,799 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,800 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 13:27:32] 2025-10-11 10:51:03,800 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,800 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 13:27:32] 2025-10-11 10:51:03,800 | INFO     | job 6837398278 has completed (purged errors)
[2025-10-11 13:27:32] 2025-10-11 10:51:03,800 | INFO     | overall cleanup function is called
[2025-10-11 13:27:32] 2025-10-11 10:51:04,806 | INFO     | --- collectZombieJob: --- 10, [247443]
[2025-10-11 13:27:32] 2025-10-11 10:51:04,807 | INFO     | zombie collector waiting for pid 247443
[2025-10-11 13:27:32] 2025-10-11 10:51:04,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 13:27:32] 2025-10-11 10:51:04,807 | INFO     | collected zombie processes
[2025-10-11 13:27:32] 2025-10-11 10:51:04,807 | INFO     | will attempt to kill all subprocesses of pid=247443
[2025-10-11 13:27:32] 2025-10-11 10:51:05,143 | INFO     | process IDs to be killed: [247443] (in reverse order)
[2025-10-11 13:27:32] 2025-10-11 10:51:05,226 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 13:27:32] 2025-10-11 10:51:05,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 13:27:32] 2025-10-11 10:51:05,235 | INFO     | did not find any defunct processes belonging to 247443
[2025-10-11 13:27:32] 2025-10-11 10:51:05,243 | INFO     | did not find any defunct processes belonging to 247443
[2025-10-11 13:27:32] 2025-10-11 10:51:05,244 | INFO     | ready for new job
[2025-10-11 13:27:32] 2025-10-11 10:51:05,244 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 13:27:32] 2025-10-11 10:51:05,246 | INFO     | ***************************************
[2025-10-11 13:27:32] 2025-10-11 10:51:05,246 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 13:27:32] 2025-10-11 10:51:05,246 | INFO     | ***************************************
[2025-10-11 13:27:32] 2025-10-11 10:51:05,246 | INFO     | 
[2025-10-11 13:27:32] 2025-10-11 10:51:05,249 | INFO     | architecture information:
[2025-10-11 13:27:32] 2025-10-11 10:51:05,249 | INFO     | executing command: cat /etc/os-release
[2025-10-11 13:27:32] 2025-10-11 10:51:05,263 | INFO     | cat /etc/os-release:
[2025-10-11 13:27:32] NAME="CentOS Linux"
[2025-10-11 13:27:32] VERSION="7 (Core)"
[2025-10-11 13:27:32] ID="centos"
[2025-10-11 13:27:32] ID_LIKE="rhel fedora"
[2025-10-11 13:27:32] VERSION_ID="7"
[2025-10-11 13:27:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 13:27:32] ANSI_COLOR="0;31"
[2025-10-11 13:27:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 13:27:32] HOME_URL="https://www.centos.org/"
[2025-10-11 13:27:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 13:27:32] 
[2025-10-11 13:27:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 13:27:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 13:27:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 13:27:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 13:27:32] 
[2025-10-11 13:27:32] 2025-10-11 10:51:05,264 | INFO     | ***************************************
[2025-10-11 13:27:32] 2025-10-11 10:51:05,765 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-10-11 13:27:32] 2025-10-11 10:51:05,780 | INFO     | sufficient remaining disk space (1676597526528 B)
[2025-10-11 13:27:32] 2025-10-11 10:51:05,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 13:27:32] 2025-10-11 10:51:05,781 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 13:27:32] 2025-10-11 10:51:05,781 | INFO     | update_server=False
[2025-10-11 13:27:32] 2025-10-11 10:51:05,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 13:27:32] 2025-10-11 10:51:05,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:27:32] 2025-10-11 10:51:05,782 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 13:27:32] 2025-10-11 10:51:05,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:27:32] 2025-10-11 10:51:05,782 | INFO     | aborting loop
[2025-10-11 13:27:32] 2025-10-11 10:51:06,042 | INFO     | all data control threads have been joined
[2025-10-11 13:27:32] 2025-10-11 10:51:06,783 | INFO     | [job] retrieve thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:06,786 | INFO     | [job] queue monitor thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:06,787 | INFO     | [job] job monitor thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:06,888 | INFO     | all job control threads have been joined
[2025-10-11 13:27:32] 2025-10-11 10:51:07,046 | INFO     | [data] control thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:07,190 | INFO     | all payload control threads have been joined
[2025-10-11 13:27:32] 2025-10-11 10:51:07,555 | INFO     | [data] copytool_in thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:07,627 | INFO     | [payload] failed_post thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:07,727 | INFO     | [payload] validate_post thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:07,767 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:07,768 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:07,787 | INFO     | [data] copytool_out thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:07,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 13:27:32] 2025-10-11 10:51:07,894 | INFO     | [job] control thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:07,941 | INFO     | [job] validate thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:08,195 | INFO     | [payload] control thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:08,227 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:11,864 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:16,536 | INFO     | job.realtimelogging is not enabled
[2025-10-11 13:27:32] 2025-10-11 10:51:17,539 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 13:27:32] 2025-10-11 10:51:34,296 | INFO     | [monitor] cgroup control has ended
[2025-10-11 13:27:32] 2025-10-11 10:51:35,467 | INFO     | PID=240511 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 13:27:32] 2025-10-11 10:51:35,467 | INFO     | .. there are 3 such processes running
[2025-10-11 13:27:32] 2025-10-11 10:51:35,467 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 13:27:32] 2025-10-11 10:51:35,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 13:27:32] 2025-10-11 10:51:35,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 13:27:32] 2025-10-11 10:51:36,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22491240478528)>', '<ExcThread(monitor, started 22490529134336)>']
[2025-10-11 13:27:32] 2025-10-11 10:51:36,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 13:27:32] 2025-10-11 10:51:36,471 | INFO     | [monitor] control thread has ended
[2025-10-11 13:27:32] 2025-10-11 10:51:41,309 | INFO     | all workflow threads have been joined
[2025-10-11 13:27:32] 2025-10-11 10:51:41,309 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 13:27:32] 2025-10-11 10:51:41,310 | INFO     | traces error code: 0
[2025-10-11 13:27:32] 2025-10-11 10:51:41,310 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 13:27:32] 2025-10-11 10:51:41,426 [wrapper] ==== pilot stdout END ====
[2025-10-11 13:27:32] 2025-10-11 10:51:41,430 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 13:27:32] 2025-10-11 10:51:41,432 [wrapper] pilotpid: 240511
[2025-10-11 13:27:32] 2025-10-11 10:51:41,434 [wrapper] Pilot exit status: 0
[2025-10-11 13:27:32] 2025-10-11 10:51:41,443 [wrapper] pandaids: 6837398278
[2025-10-11 13:27:32] 2025-10-11 10:51:41,498 [wrapper] cleanup supervisor_pilot  433766 240512
[2025-10-11 13:27:32] 2025-10-11 10:51:41,501 [wrapper] Test setup, not cleaning
[2025-10-11 13:27:32] 2025-10-11 10:51:41,503 [wrapper] apfmon messages muted
[2025-10-11 13:27:32] 2025-10-11 10:51:41,506 [wrapper] ==== wrapper stdout END ====
[2025-10-11 13:27:32] 2025-10-11 10:51:41,508 [wrapper] ==== wrapper stderr END ====
[2025-10-11 13:27:32]  *** Error codes and diagnostics ***
[2025-10-11 13:27:32]     "exeErrorCode": 0,
[2025-10-11 13:27:32]     "exeErrorDiag": "",
[2025-10-11 13:27:32]     "pilotErrorCode": 0,
[2025-10-11 13:27:32]     "pilotErrorDiag": "",
[2025-10-11 13:27:32]  *** Listing of results directory ***
[2025-10-11 13:27:32] total 414824
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc    557409 Oct 10 04:47 pilot3.tar.gz
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc      5112 Oct 10 04:52 queuedata.json
[2025-10-11 13:27:32] -rwx------ 1 boinc boinc     36292 Oct 10 04:55 runpilot2-wrapper.sh
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc       100 Oct 11 09:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 13:27:32] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 09:15 run_atlas
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc       105 Oct 11 09:15 job.xml
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc      6421 Oct 11 09:16 init_data.xml
[2025-10-11 13:27:32] -rw-r--r-- 2 boinc boinc 223989918 Oct 11 09:16 EVNT.46676267._001263.pool.root.1
[2025-10-11 13:27:32] -rw-r--r-- 2 boinc boinc     15120 Oct 11 09:16 start_atlas.sh
[2025-10-11 13:27:32] drwxrwx--x 2 boinc boinc      4096 Oct 11 09:16 shared
[2025-10-11 13:27:32] -rw-r--r-- 2 boinc boinc    569681 Oct 11 09:16 input.tar.gz
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc         0 Oct 11 09:16 boinc_lockfile
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc      2550 Oct 11 09:16 pandaJob.out
[2025-10-11 13:27:32] -rw------- 1 boinc boinc    975525 Oct 11 09:16 agis_schedconf.cvmfs.json
[2025-10-11 13:27:32] drwx------ 5 boinc boinc      4096 Oct 11 09:16 pilot3
[2025-10-11 13:27:32] -rw------- 1 boinc boinc 192433326 Oct 11 12:50 HITS.46676269._030981.pool.root.1
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc       527 Oct 11 12:50 boinc_task_state.xml
[2025-10-11 13:27:32] -rw------- 1 boinc boinc      1029 Oct 11 12:50 memory_monitor_summary.json
[2025-10-11 13:27:32] -rw------- 1 boinc boinc   1560580 Oct 11 12:50 agis_ddmendpoints.agis.ALL.json
[2025-10-11 13:27:32] -rw------- 1 boinc boinc    388518 Oct 11 12:50 log.46676269._030981.job.log.tgz.1
[2025-10-11 13:27:32] -rw------- 1 boinc boinc        95 Oct 11 12:50 pilot_heartbeat.json
[2025-10-11 13:27:32] -rw------- 1 boinc boinc      7834 Oct 11 12:51 heartbeat.json
[2025-10-11 13:27:32] -rw------- 1 boinc boinc      4905 Oct 11 12:51 pilotlog.txt
[2025-10-11 13:27:32] -rw------- 1 boinc boinc   1836905 Oct 11 12:51 log.46676269._030981.job.log.1
[2025-10-11 13:27:32] -rw------- 1 boinc boinc       357 Oct 11 12:51 output.list
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc       620 Oct 11 12:51 runtime_log
[2025-10-11 13:27:32] -rw------- 1 boinc boinc   2242560 Oct 11 12:51 result.tar.gz
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc      9070 Oct 11 12:51 runtime_log.err
[2025-10-11 13:27:32] -rw------- 1 boinc boinc       665 Oct 11 12:51 7SMNDm0SIR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmN6bNDmO58UEo.diag
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc        26 Oct 11 13:27 wrapper_checkpoint.txt
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc      8192 Oct 11 13:27 boinc_mmap_file
[2025-10-11 13:27:32] -rw-r--r-- 1 boinc boinc     20898 Oct 11 13:27 stderr.txt
[2025-10-11 13:27:32] HITS file was successfully produced:
[2025-10-11 13:27:32] -rw------- 1 boinc boinc 192433326 Oct 11 12:50 shared/HITS.pool.root.1
[2025-10-11 13:27:32]  *** Contents of shared directory: ***
[2025-10-11 13:27:32] total 409444
[2025-10-11 13:27:32] -rw-r--r-- 2 boinc boinc 223989918 Oct 11 09:16 ATLAS.root_0
[2025-10-11 13:27:32] -rw-r--r-- 2 boinc boinc     15120 Oct 11 09:16 start_atlas.sh
[2025-10-11 13:27:32] -rw-r--r-- 2 boinc boinc    569681 Oct 11 09:16 input.tar.gz
[2025-10-11 13:27:32] -rw------- 1 boinc boinc 192433326 Oct 11 12:50 HITS.pool.root.1
[2025-10-11 13:27:32] -rw------- 1 boinc boinc   2242560 Oct 11 12:51 result.tar.gz
13:27:34 (236819): run_atlas exited; CPU time 50051.154584
13:27:34 (236819): called boinc_finish(0)

</stderr_txt>
]]>

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