Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:22:12 (3958611): wrapper (7.7.26015): starting
15:22:12 (3958611): wrapper: running run_atlas (--nthreads 2)
[2025-10-10 15:22:12] Arguments: --nthreads 2
[2025-10-10 15:22:12] Threads: 2
[2025-10-10 15:22:12] Checking for CVMFS
[2025-10-10 15:22:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 15:22:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 15:22:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 15:22:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 15:22:13] 2.11.0.0 3088652 221 46432 151547 2 57 4144497 4194304 0 130560 0 2733102 99.999 10783 1137 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 15:22:13] CVMFS is ok
[2025-10-10 15:22:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 15:22:13] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 15:22:13] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 15:22:13] Further information can be found at the LHC@home message board.
[2025-10-10 15:22:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 15:22:13] Checking for apptainer binary...
[2025-10-10 15:22:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 15:22:13] Running /usr/bin/apptainer --version
[2025-10-10 15:22:13] apptainer version 1.2.2-1.el8
[2025-10-10 15:22:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 15:22:13] bottom
[2025-10-10 15:22:13] apptainer works
[2025-10-10 15:22:13] Set ATHENA_PROC_NUMBER=2
[2025-10-10 15:22:13] Set ATHENA_CORE_NUMBER=2
[2025-10-10 15:22:13] Starting ATLAS job with PandaID=6837506985
[2025-10-10 15:22:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 15:29:33]  *** The last 200 lines of the pilot log: ***
[2025-10-10 15:29:34] 2025-10-10 13:28:45,244 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-10 15:29:34] 2025-10-10 13:28:45,245 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6837506985/memory_monitor_output.txt
[2025-10-10 15:29:34] 2025-10-10 13:28:45,245 | INFO     | memory summary dictionary not yet available
[2025-10-10 15:29:34] 2025-10-10 13:28:45,245 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 15:29:34] 2025-10-10 13:28:45,246 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:29:34] 2025-10-10 13:28:45,246 | INFO     | could have reported an average CPU frequency of 1775 MHz (4 samples)
[2025-10-10 15:29:34] 2025-10-10 13:28:45,246 | INFO     | ..............................
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . Timing measurements:
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . get job = 0 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . initial setup = 2 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . payload setup = 9 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . stage-in = 1 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . payload execution = 161 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . stage-out = 0 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | . log creation = 0 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | ..............................
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6837506985/pilotlog.txt
[2025-10-10 15:29:34] 2025-10-10 13:28:45,267 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 15:29:34] - Log from pilotlog.txt -
[2025-10-10 15:29:34] 2025-10-10 13:28:44,847 | INFO     | PID=3962241 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 15:29:34] 2025-10-10 13:28:45,242 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-10 15:29:34] 2025-10-10 13:28:45,244 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-10 15:29:34] 2025-10-10 13:28:45,245 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6837506985/memory_monitor_output.txt
[2025-10-10 15:29:34] 2025-10-10 13:28:45,245 | INFO     | memory summary dictionary not yet available
[2025-10-10 15:29:34] 2025-10-10 13:28:45,245 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 15:29:34] 2025-10-10 13:28:45,246 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:29:34] 2025-10-10 13:28:45,246 | INFO     | could have reported an average CPU frequency of 1775 MHz (4 samples)
[2025-10-10 15:29:34] 2025-10-10 13:28:45,246 | INFO     | ..............................
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . Timing measurements:
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . get job = 0 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . initial setup = 2 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . payload setup = 9 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . stage-in = 1 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . payload execution = 161 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . stage-out = 0 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | . log creation = 0 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | ..............................
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6837506985/pilotlog.txt
[2025-10-10 15:29:34] 2025-10-10 13:28:45,267 | WARNING  | 
[2025-10-10 15:29:34] [begin log extracts]
[2025-10-10 15:29:34] - Log from pilotlog.txt -
[2025-10-10 15:29:34] 2025-10-10 13:28:44,847 | INFO     | PID=3962241 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 15:29:34] 2025-10-10 13:28:45,242 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-10 15:29:34] 2025-10-10 13:28:45,244 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-10 15:29:34] 2025-10-10 13:28:45,245 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6837506985/memory_monitor_output.txt
[2025-10-10 15:29:34] 2025-10-10 13:28:45,245 | INFO     | memory summary dictionary not yet available
[2025-10-10 15:29:34] 2025-10-10 13:28:45,245 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 15:29:34] 2025-10-10 13:28:45,246 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:29:34] 2025-10-10 13:28:45,246 | INFO     | could have reported an average CPU frequency of 1775 MHz (4 samples)
[2025-10-10 15:29:34] 2025-10-10 13:28:45,246 | INFO     | ..............................
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . Timing measurements:
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . get job = 0 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . initial setup = 2 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . payload setup = 9 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . stage-in = 1 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . payload execution = 161 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,247 | INFO     | . stage-out = 0 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | . log creation = 0 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | ..............................
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 15:29:34] 2025-10-10 13:28:45,248 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6837506985/pilotlog.txt
[2025-10-10 15:29:34] [end log extracts]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,267 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 15:29:34] 2025-10-10 13:28:45,268 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-10 15:29:34] 2025-10-10 13:28:45,596 | INFO     | 
[2025-10-10 15:29:34] 2025-10-10 13:28:45,597 | INFO     | job summary report
[2025-10-10 15:29:34] 2025-10-10 13:28:45,597 | INFO     | --------------------------------------------------
[2025-10-10 15:29:34] 2025-10-10 13:28:45,597 | INFO     | PanDA job id: 6837506985
[2025-10-10 15:29:34] 2025-10-10 13:28:45,597 | INFO     | task id: 46676269
[2025-10-10 15:29:34] 2025-10-10 13:28:45,597 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 15:25:32,382 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 15:29:34] 2025-10-10 13:28:45,598 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 15:29:34] 2025-10-10 13:28:45,598 | INFO     | pilot state: failed 
[2025-10-10 15:29:34] 2025-10-10 13:28:45,598 | INFO     | transexitcode: 65
[2025-10-10 15:29:34] 2025-10-10 13:28:45,598 | INFO     | exeerrorcode: 65
[2025-10-10 15:29:34] 2025-10-10 13:28:45,598 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-10 15:29:34] 2025-10-10 13:28:45,598 | INFO     | exitcode: 65
[2025-10-10 15:29:34] 2025-10-10 13:28:45,598 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-10 15:29:34] 2025-10-10 13:28:45,598 | INFO     | cpuconsumptiontime: 155 s
[2025-10-10 15:29:34] 2025-10-10 13:28:45,599 | INFO     | nevents: 0
[2025-10-10 15:29:34] 2025-10-10 13:28:45,599 | INFO     | neventsw: 0
[2025-10-10 15:29:34] 2025-10-10 13:28:45,599 | INFO     | pid: 3968738
[2025-10-10 15:29:34] 2025-10-10 13:28:45,599 | INFO     | pgrp: 3968738
[2025-10-10 15:29:34] 2025-10-10 13:28:45,599 | INFO     | corecount: 2
[2025-10-10 15:29:34] 2025-10-10 13:28:45,599 | INFO     | event service: False
[2025-10-10 15:29:34] 2025-10-10 13:28:45,599 | INFO     | sizes: {0: 2348628, 1: 2348883, 9: 2349145, 12: 2349173, 234: 2372537, 235: 2376832, 237: 2376988, 360: 2377154}
[2025-10-10 15:29:34] 2025-10-10 13:28:45,600 | INFO     | --------------------------------------------------
[2025-10-10 15:29:34] 2025-10-10 13:28:45,600 | INFO     | 
[2025-10-10 15:29:34] 2025-10-10 13:28:45,600 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-10 15:29:34] 2025-10-10 13:28:45,626 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,626 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,627 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,627 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,627 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,627 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,627 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,627 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,627 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,628 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,628 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,628 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,628 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,628 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,628 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,629 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 15:29:34] 2025-10-10 13:28:45,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,629 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 15:29:34] 2025-10-10 13:28:45,629 | INFO     | job 6837506985 has completed (purged errors)
[2025-10-10 15:29:34] 2025-10-10 13:28:45,630 | INFO     | overall cleanup function is called
[2025-10-10 15:29:34] 2025-10-10 13:28:46,637 | INFO     | --- collectZombieJob: --- 10, [3968738]
[2025-10-10 15:29:34] 2025-10-10 13:28:46,637 | INFO     | zombie collector waiting for pid 3968738
[2025-10-10 15:29:34] 2025-10-10 13:28:46,637 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 15:29:34] 2025-10-10 13:28:46,637 | INFO     | collected zombie processes
[2025-10-10 15:29:34] 2025-10-10 13:28:46,637 | INFO     | will attempt to kill all subprocesses of pid=3968738
[2025-10-10 15:29:34] 2025-10-10 13:28:46,711 | INFO     | process IDs to be killed: [3968738] (in reverse order)
[2025-10-10 15:29:34] 2025-10-10 13:28:46,758 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 15:29:34] 2025-10-10 13:28:46,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 15:29:34] 2025-10-10 13:28:46,762 | INFO     | did not find any defunct processes belonging to 3968738
[2025-10-10 15:29:34] 2025-10-10 13:28:46,765 | INFO     | did not find any defunct processes belonging to 3968738
[2025-10-10 15:29:34] 2025-10-10 13:28:46,765 | INFO     | ready for new job
[2025-10-10 15:29:34] 2025-10-10 13:28:46,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 15:29:34] 2025-10-10 13:28:46,767 | INFO     | ***************************************
[2025-10-10 15:29:34] 2025-10-10 13:28:46,767 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 15:29:34] 2025-10-10 13:28:46,767 | INFO     | ***************************************
[2025-10-10 15:29:34] 2025-10-10 13:28:46,767 | INFO     | 
[2025-10-10 15:29:34] 2025-10-10 13:28:46,780 | INFO     | architecture information:
[2025-10-10 15:29:34] 2025-10-10 13:28:46,780 | INFO     | executing command: cat /etc/os-release
[2025-10-10 15:29:34] 2025-10-10 13:28:46,800 | INFO     | cat /etc/os-release:
[2025-10-10 15:29:34] NAME="CentOS Linux"
[2025-10-10 15:29:34] VERSION="7 (Core)"
[2025-10-10 15:29:34] ID="centos"
[2025-10-10 15:29:34] ID_LIKE="rhel fedora"
[2025-10-10 15:29:34] VERSION_ID="7"
[2025-10-10 15:29:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 15:29:34] ANSI_COLOR="0;31"
[2025-10-10 15:29:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 15:29:34] HOME_URL="https://www.centos.org/"
[2025-10-10 15:29:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 15:29:34] 
[2025-10-10 15:29:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 15:29:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 15:29:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 15:29:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 15:29:34] 
[2025-10-10 15:29:34] 2025-10-10 13:28:46,801 | INFO     | ***************************************
[2025-10-10 15:29:34] 2025-10-10 13:28:47,302 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-10 15:29:34] 2025-10-10 13:28:47,321 | INFO     | sufficient remaining disk space (212376485888 B)
[2025-10-10 15:29:34] 2025-10-10 13:28:47,322 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 15:29:34] 2025-10-10 13:28:47,322 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 15:29:34] 2025-10-10 13:28:47,322 | INFO     | update_server=False
[2025-10-10 15:29:34] 2025-10-10 13:28:47,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 15:29:34] 2025-10-10 13:28:47,323 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:29:34] 2025-10-10 13:28:47,323 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 15:29:34] 2025-10-10 13:28:47,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:29:34] 2025-10-10 13:28:47,324 | INFO     | aborting loop
[2025-10-10 15:29:34] 2025-10-10 13:28:47,449 | INFO     | all job control threads have been joined
[2025-10-10 15:29:34] 2025-10-10 13:28:48,295 | INFO     | all payload control threads have been joined
[2025-10-10 15:29:34] 2025-10-10 13:28:48,324 | INFO     | [job] retrieve thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:48,328 | INFO     | [job] queue monitor thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:48,329 | INFO     | [job] job monitor thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:48,408 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:48,424 | INFO     | all data control threads have been joined
[2025-10-10 15:29:34] 2025-10-10 13:28:48,426 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:48,454 | INFO     | [job] control thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:48,602 | INFO     | [payload] validate_post thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:48,733 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:48,897 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:49,073 | INFO     | [data] copytool_in thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:49,301 | INFO     | [payload] control thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:49,329 | INFO     | [data] copytool_out thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:49,430 | INFO     | [data] control thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:49,511 | INFO     | [payload] failed_post thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:49,636 | INFO     | [job] validate thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:28:49,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 15:29:34] 2025-10-10 13:28:53,967 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 15:29:34] 2025-10-10 13:29:17,014 | INFO     | PID=3962241 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 15:29:34] 2025-10-10 13:29:17,014 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 15:29:34] 2025-10-10 13:29:17,014 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 15:29:34] 2025-10-10 13:29:17,014 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 15:29:34] 2025-10-10 13:29:27,897 | INFO     | [monitor] cgroup control has ended
[2025-10-10 15:29:34] 2025-10-10 13:29:28,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140028566558528)>', '<ExcThread(monitor, started 140028114089728)>']
[2025-10-10 15:29:34] 2025-10-10 13:29:29,071 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 15:29:34] 2025-10-10 13:29:29,071 | INFO     | [monitor] control thread has ended
[2025-10-10 15:29:34] 2025-10-10 13:29:33,227 | INFO     | all workflow threads have been joined
[2025-10-10 15:29:34] 2025-10-10 13:29:33,228 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 15:29:34] 2025-10-10 13:29:33,228 | INFO     | traces error code: 0
[2025-10-10 15:29:34] 2025-10-10 13:29:33,228 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 15:29:34] 2025-10-10 13:29:33,444 [wrapper] ==== pilot stdout END ====
[2025-10-10 15:29:34] 2025-10-10 13:29:33,448 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 15:29:34] 2025-10-10 13:29:33,452 [wrapper] pilotpid: 3962241
[2025-10-10 15:29:34] 2025-10-10 13:29:33,456 [wrapper] Pilot exit status: 0
[2025-10-10 15:29:34] 2025-10-10 13:29:33,805 [wrapper] pandaids: 6837506985
[2025-10-10 15:29:34] 2025-10-10 13:29:33,831 [wrapper] cleanup supervisor_pilot 3962247 3962242
[2025-10-10 15:29:34] 2025-10-10 13:29:33,835 [wrapper] Test setup, not cleaning
[2025-10-10 15:29:34] 2025-10-10 13:29:33,839 [wrapper] apfmon messages muted
[2025-10-10 15:29:34] 2025-10-10 13:29:33,843 [wrapper] ==== wrapper stdout END ====
[2025-10-10 15:29:34] 2025-10-10 13:29:33,846 [wrapper] ==== wrapper stderr END ====
[2025-10-10 15:29:34]  *** Error codes and diagnostics ***
[2025-10-10 15:29:34]     "exeErrorCode": 65,
[2025-10-10 15:29:34]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-10 15:29:34]     "pilotErrorCode": 1305,
[2025-10-10 15:29:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-10 15:29:34]  *** Listing of results directory ***
[2025-10-10 15:29:34] total 219092
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc      5112 Oct 10 08:55 queuedata.json
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc    557409 Oct 10 08:56 pilot3.tar.gz
[2025-10-10 15:29:34] -rwx------ 1 boinc boinc     36292 Oct 10 08:56 runpilot2-wrapper.sh
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc       100 Oct 10 15:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 15:29:34] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 15:22 run_atlas
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc       105 Oct 10 15:22 job.xml
[2025-10-10 15:29:34] -rw-r--r-- 2 boinc boinc 220092288 Oct 10 15:22 EVNT.46676267._001388.pool.root.1
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc      5984 Oct 10 15:22 init_data.xml
[2025-10-10 15:29:34] drwxrwx--x 2 boinc boinc        68 Oct 10 15:22 shared
[2025-10-10 15:29:34] -rw-r--r-- 2 boinc boinc    569677 Oct 10 15:22 input.tar.gz
[2025-10-10 15:29:34] -rw-r--r-- 2 boinc boinc     15120 Oct 10 15:22 start_atlas.sh
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc         0 Oct 10 15:22 boinc_lockfile
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc      2549 Oct 10 15:22 pandaJob.out
[2025-10-10 15:29:34] -rw------- 1 boinc boinc    975525 Oct 10 15:22 agis_schedconf.cvmfs.json
[2025-10-10 15:29:34] -rw------- 1 boinc boinc   1560580 Oct 10 15:22 agis_ddmendpoints.agis.ALL.json
[2025-10-10 15:29:34] drwx------ 5 boinc boinc      4096 Oct 10 15:22 pilot3
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc       524 Oct 10 15:25 boinc_task_state.xml
[2025-10-10 15:29:34] -rw------- 1 boinc boinc     46760 Oct 10 15:26 log.46676269._034104.job.log.tgz.1
[2025-10-10 15:29:34] -rw------- 1 boinc boinc        95 Oct 10 15:28 pilot_heartbeat.json
[2025-10-10 15:29:34] -rw------- 1 boinc boinc      8059 Oct 10 15:28 heartbeat.json
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc      8192 Oct 10 15:29 boinc_mmap_file
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc        23 Oct 10 15:29 wrapper_checkpoint.txt
[2025-10-10 15:29:34] -rw------- 1 boinc boinc      4749 Oct 10 15:29 pilotlog.txt
[2025-10-10 15:29:34] -rw------- 1 boinc boinc    143187 Oct 10 15:29 log.46676269._034104.job.log.1
[2025-10-10 15:29:34] -rw------- 1 boinc boinc       188 Oct 10 15:29 output.list
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc       620 Oct 10 15:29 runtime_log
[2025-10-10 15:29:34] -rw------- 1 boinc boinc    204800 Oct 10 15:29 result.tar.gz
[2025-10-10 15:29:34] -rw------- 1 boinc boinc       639 Oct 10 15:29 uPHKDmJEMR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFfcNDmgHDtwn.diag
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc      8505 Oct 10 15:29 runtime_log.err
[2025-10-10 15:29:34] -rw-r--r-- 1 boinc boinc     22109 Oct 10 15:29 stderr.txt
[2025-10-10 15:29:34] No HITS result produced
[2025-10-10 15:29:34]  *** Contents of shared directory: ***
[2025-10-10 15:29:34] total 215712
[2025-10-10 15:29:34] -rw-r--r-- 2 boinc boinc 220092288 Oct 10 15:22 ATLAS.root_0
[2025-10-10 15:29:34] -rw-r--r-- 2 boinc boinc    569677 Oct 10 15:22 input.tar.gz
[2025-10-10 15:29:34] -rw-r--r-- 2 boinc boinc     15120 Oct 10 15:22 start_atlas.sh
[2025-10-10 15:29:34] -rw------- 1 boinc boinc    204800 Oct 10 15:29 result.tar.gz
15:29:35 (3958611): run_atlas exited; CPU time 137.122252
15:29:35 (3958611): called boinc_finish(0)

</stderr_txt>
]]>

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