Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:34:28 (163653): wrapper (7.7.26015): starting
17:34:28 (163653): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 17:34:28] Arguments: --nthreads 3
[2025-10-13 17:34:28] Threads: 3
[2025-10-13 17:34:28] Checking for CVMFS
[2025-10-13 17:34:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 17:34:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 17:34:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 17:34:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 17:34:28] 2.9.2.0 41755 382 58768 151666 2 57 27332228 36864001 0 130560 0 322112 99.988 17372 1007 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 17:34:28] CVMFS is ok
[2025-10-13 17:34:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 17:34:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 17:34:28] Further information can be found at the LHC@home message board.
[2025-10-13 17:34:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 17:34:28] Checking for apptainer binary...
[2025-10-13 17:34:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 17:34:28] Running /usr/bin/apptainer --version
[2025-10-13 17:34:28] apptainer version 1.4.1-1.1
[2025-10-13 17:34:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 17:34:28] thA389a
[2025-10-13 17:34:28] apptainer works
[2025-10-13 17:34:28] Set ATHENA_PROC_NUMBER=3
[2025-10-13 17:34:28] Set ATHENA_CORE_NUMBER=3
[2025-10-13 17:34:28] Starting ATLAS job with PandaID=6837506957
[2025-10-13 17:34:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 19:04:52]  *** The last 200 lines of the pilot log: ***
[2025-10-13 19:04:52] 2025-10-13 17:04:03,174 | INFO     | all data control threads have been joined
[2025-10-13 19:04:52] 2025-10-13 17:04:03,406 | INFO     | [job] retrieve thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:03,407 | INFO     | [job] queue monitor thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:03,415 | INFO     | [payload] control thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:03,417 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:03,429 | INFO     | [job] validate thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:03,495 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:03,623 | INFO     | all job control threads have been joined
[2025-10-13 19:04:52] 2025-10-13 17:04:03,627 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:03,894 | INFO     | [job] job monitor thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:04,097 | INFO     | [data] copytool_in thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:04,180 | INFO     | [data] control thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:04,358 | INFO     | [payload] validate_post thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:04,406 | INFO     | [data] copytool_out thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:04,441 | INFO     | [payload] failed_post thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:04,629 | INFO     | [job] control thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:06,407 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:12,757 | INFO     | job.realtimelogging is not enabled
[2025-10-13 19:04:52] 2025-10-13 17:04:13,763 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 19:04:52] 2025-10-13 17:04:33,307 | INFO     | PID=167385 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 19:04:52] 2025-10-13 17:04:33,308 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 19:04:52] 2025-10-13 17:04:33,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 19:04:52] 2025-10-13 17:04:33,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 19:04:52] 2025-10-13 17:04:38,444 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-13 19:04:52] 2025-10-13 17:04:47,155 | INFO     | [monitor] cgroup control has ended
[2025-10-13 19:04:52] 2025-10-13 17:04:47,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140457309910848)>', '<ExcThread(monitor, started 140456822298368)>']
[2025-10-13 19:04:52] 2025-10-13 17:04:47,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 19:04:52] 2025-10-13 17:04:47,381 | INFO     | [monitor] control thread has ended
[2025-10-13 19:04:52] 2025-10-13 17:04:52,267 | INFO     | all workflow threads have been joined
[2025-10-13 19:04:52] 2025-10-13 17:04:52,268 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 19:04:52] 2025-10-13 17:04:52,268 | INFO     | traces error code: 0
[2025-10-13 19:04:52] 2025-10-13 17:04:52,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 19:04:52] 2025-10-13 17:04:52,314 [wrapper] ==== pilot stdout END ====
[2025-10-13 19:04:52] 2025-10-13 17:04:52,317 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 19:04:52] 2025-10-13 17:04:52,320 [wrapper] pilotpid: 167385
[2025-10-13 19:04:52] 2025-10-13 17:04:52,322 [wrapper] Pilot exit status: 0
[2025-10-13 19:04:52] 2025-10-13 17:04:52,329 [wrapper] pandaids: 6837506957
[2025-10-13 19:04:52] 2025-10-13 17:04:52,348 [wrapper] cleanup supervisor_pilot  188669 167386
[2025-10-13 19:04:52] 2025-10-13 17:04:52,351 [wrapper] Test setup, not cleaning
[2025-10-13 19:04:52] 2025-10-13 17:04:52,353 [wrapper] apfmon messages muted
[2025-10-13 19:04:52] 2025-10-13 17:04:52,356 [wrapper] ==== wrapper stdout END ====
[2025-10-13 19:04:52] 2025-10-13 17:04:52,358 [wrapper] ==== wrapper stderr END ====
[2025-10-13 19:04:52]  *** Error codes and diagnostics ***
[2025-10-13 19:04:52]     "exeErrorCode": 0,
[2025-10-13 19:04:52]     "exeErrorDiag": "",
[2025-10-13 19:04:52]     "pilotErrorCode": 0,
[2025-10-13 19:04:52]     "pilotErrorDiag": "",
[2025-10-13 19:04:52]  *** Listing of results directory ***
[2025-10-13 19:04:52] total 413036
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc    557409 Oct 10 08:48 pilot3.tar.gz
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc      5112 Oct 10 08:50 queuedata.json
[2025-10-13 19:04:52] -rwx------ 1 boinc boinc     36292 Oct 10 08:50 runpilot2-wrapper.sh
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc       100 Oct 13 17:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 19:04:52] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 17:34 run_atlas
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc       105 Oct 13 17:34 job.xml
[2025-10-13 19:04:52] -rw-r--r-- 2 boinc boinc 224261447 Oct 13 17:34 EVNT.46676267._001386.pool.root.1
[2025-10-13 19:04:52] drwxrwx--x 2 boinc boinc      4096 Oct 13 17:34 shared
[2025-10-13 19:04:52] -rw-r--r-- 2 boinc boinc    569679 Oct 13 17:34 input.tar.gz
[2025-10-13 19:04:52] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:34 start_atlas.sh
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:34 boinc_setup_complete
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc      6196 Oct 13 17:34 init_data.xml
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc         0 Oct 13 17:34 boinc_lockfile
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc      2550 Oct 13 17:34 pandaJob.out
[2025-10-13 19:04:52] -rw------- 1 boinc boinc    972783 Oct 13 17:34 agis_schedconf.cvmfs.json
[2025-10-13 19:04:52] -rw------- 1 boinc boinc   1560580 Oct 13 17:34 agis_ddmendpoints.agis.ALL.json
[2025-10-13 19:04:52] drwx------ 5 boinc boinc      4096 Oct 13 17:34 pilot3
[2025-10-13 19:04:52] -rw------- 1 boinc boinc 192695050 Oct 13 19:03 HITS.46676269._034076.pool.root.1
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc       529 Oct 13 19:03 boinc_task_state.xml
[2025-10-13 19:04:52] -rw------- 1 boinc boinc      1034 Oct 13 19:03 memory_monitor_summary.json
[2025-10-13 19:04:52] -rw------- 1 boinc boinc    272571 Oct 13 19:03 log.46676269._034076.job.log.tgz.1
[2025-10-13 19:04:52] -rw------- 1 boinc boinc      7766 Oct 13 19:04 heartbeat.json
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc      8192 Oct 13 19:04 boinc_mmap_file
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc        27 Oct 13 19:04 wrapper_checkpoint.txt
[2025-10-13 19:04:52] -rw------- 1 boinc boinc        95 Oct 13 19:04 pilot_heartbeat.json
[2025-10-13 19:04:52] -rw------- 1 boinc boinc      4823 Oct 13 19:04 pilotlog.txt
[2025-10-13 19:04:52] -rw------- 1 boinc boinc    782037 Oct 13 19:04 log.46676269._034076.job.log.1
[2025-10-13 19:04:52] -rw------- 1 boinc boinc       357 Oct 13 19:04 output.list
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc       620 Oct 13 19:04 runtime_log
[2025-10-13 19:04:52] -rw------- 1 boinc boinc   1075200 Oct 13 19:04 result.tar.gz
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc      8782 Oct 13 19:04 runtime_log.err
[2025-10-13 19:04:52] -rw------- 1 boinc boinc       659 Oct 13 19:04 eH2LDmk8LR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmoTPMDmNGDGim.diag
[2025-10-13 19:04:52] -rw-r--r-- 1 boinc boinc      6686 Oct 13 19:04 stderr.txt
[2025-10-13 19:04:52] HITS file was successfully produced:
[2025-10-13 19:04:52] -rw------- 1 boinc boinc 192695050 Oct 13 19:03 shared/HITS.pool.root.1
[2025-10-13 19:04:52]  *** Contents of shared directory: ***
[2025-10-13 19:04:52] total 408820
[2025-10-13 19:04:52] -rw-r--r-- 2 boinc boinc 224261447 Oct 13 17:34 ATLAS.root_0
[2025-10-13 19:04:52] -rw-r--r-- 2 boinc boinc    569679 Oct 13 17:34 input.tar.gz
[2025-10-13 19:04:52] -rw-r--r-- 2 boinc boinc     15120 Oct 13 17:34 start_atlas.sh
[2025-10-13 19:04:52] -rw------- 1 boinc boinc 192695050 Oct 13 19:03 HITS.pool.root.1
[2025-10-13 19:04:52] -rw------- 1 boinc boinc   1075200 Oct 13 19:04 result.tar.gz
19:04:54 (163653): run_atlas exited; CPU time 15230.633806
19:04:54 (163653): called boinc_finish(0)

</stderr_txt>
]]>

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