Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:28:23 (24083): wrapper (7.7.26015): starting
08:28:23 (24083): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 08:28:23] Arguments: --nthreads 8
[2025-10-10 08:28:23] Threads: 8
[2025-10-10 08:28:23] Checking for CVMFS
[2025-10-10 08:28:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 08:28:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 08:28:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 08:28:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 08:28:23] 2.11.2.0 1598 213323 122884 151546 2 59 17767831 20275200 917 130560 1 214890438 99.992 11605097 11104 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 08:28:23] CVMFS is ok
[2025-10-10 08:28:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 08:28:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 08:28:23] Further information can be found at the LHC@home message board.
[2025-10-10 08:28:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 08:28:23] Checking for apptainer binary...
[2025-10-10 08:28:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 08:28:23] Running /usr/bin/apptainer --version
[2025-10-10 08:28:23] apptainer version 1.3.2-1.el7
[2025-10-10 08:28:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 08:28:24] c-205-36.aglt2.org
[2025-10-10 08:28:24] apptainer works
[2025-10-10 08:28:24] Set ATHENA_PROC_NUMBER=8
[2025-10-10 08:28:24] Set ATHENA_CORE_NUMBER=8
[2025-10-10 08:28:24] Starting ATLAS job with PandaID=6837359409
[2025-10-10 08:28:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 09:36:49]  *** The last 200 lines of the pilot log: ***
[2025-10-10 09:36:49] 2025-10-10 13:35:49,602 | INFO     | .. there are 2 such processes running
[2025-10-10 09:36:49] 2025-10-10 13:35:50,602 | INFO     | time since job start (4034s) is within the limit (172800.0s)
[2025-10-10 09:36:49] 2025-10-10 13:35:51,105 | WARNING  | process 1730 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 09:36:49] 2025-10-10 13:35:51,105 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837359409/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 09:36:49] 2025-10-10 13:35:51,106 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837359409/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 09:36:49] 2025-10-10 13:35:51,106 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-10 09:36:49] 2025-10-10 13:35:51,106 | WARNING  | maxPSS not found in memory monitor output
[2025-10-10 09:36:49] 2025-10-10 13:35:51,107 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3297970 B
[2025-10-10 09:36:49] 2025-10-10 13:35:51,107 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15542 B
[2025-10-10 09:36:49] 2025-10-10 13:35:51,107 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 09:36:49] 2025-10-10 13:35:51,123 | INFO     | sufficient remaining disk space (32686211072 B)
[2025-10-10 09:36:49] 2025-10-10 13:35:51,124 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-10 09:36:49] 2025-10-10 13:35:51,124 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6837359409: 3593729 B (within 2537553920 B limit)
[2025-10-10 09:36:49] 2025-10-10 13:35:51,124 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6837359409/HITS.46676269._025068.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-10 09:36:49] 2025-10-10 13:35:51,124 | INFO     | total size of present files: 0 B (workdir size: 3593729 B)
[2025-10-10 09:36:49] 2025-10-10 13:35:51,124 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6837359409/HITS.46676269._025068.pool.root.1 since it does not exist
[2025-10-10 09:36:49] 2025-10-10 13:35:51,204 | INFO     | number of running child processes to parent process 1730: 1
[2025-10-10 09:36:49] 2025-10-10 13:35:51,204 | INFO     | maximum number of monitored processes: 6
[2025-10-10 09:36:49] 2025-10-10 13:35:52,608 | INFO     | time since job start (4036s) is within the limit (172800.0s)
[2025-10-10 09:36:49] 2025-10-10 13:35:52,874 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 09:36:49] 2025-10-10 13:35:52,960 | INFO     | job 6837359409 has state=finished
[2025-10-10 09:36:49] 2025-10-10 13:35:52,960 | INFO     | preparing for final server update for job 6837359409 in state='finished'
[2025-10-10 09:36:49] 2025-10-10 13:35:52,961 | INFO     | this job has now completed (state=finished)
[2025-10-10 09:36:49] 2025-10-10 13:35:52,961 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 09:36:49] 2025-10-10 13:35:52,961 | INFO     | log transfer has been attempted: DONE
[2025-10-10 09:36:49] 2025-10-10 13:35:52,961 | INFO     | job 6837359409 has finished - writing final server update
[2025-10-10 09:36:49] 2025-10-10 13:35:52,961 | INFO     | total number of processed events: 400 (read)
[2025-10-10 09:36:49] 2025-10-10 13:35:52,962 | INFO     | executing command: lscpu
[2025-10-10 09:36:49] 2025-10-10 13:35:52,989 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 09:36:49] 2025-10-10 13:35:53,707 | INFO     | monitor loop #300: job 0:6837359409 is in state 'finished'
[2025-10-10 09:36:49] 2025-10-10 13:35:53,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 09:36:49] 2025-10-10 13:35:54,614 | INFO     | time since job start (4038s) is within the limit (172800.0s)
[2025-10-10 09:36:49] 2025-10-10 13:35:56,210 | INFO     | monitor loop #301: job 0:6837359409 is in state 'finished'
[2025-10-10 09:36:49] 2025-10-10 13:35:56,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 09:36:49] 2025-10-10 13:35:56,618 | INFO     | time since job start (4040s) is within the limit (172800.0s)
[2025-10-10 09:36:49] 2025-10-10 13:35:56,981 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 09:36:49] 2025-10-10 13:35:56,986 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2098.315
[2025-10-10 09:36:49] 2025-10-10 13:35:56,990 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837359409/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 09:36:49] 2025-10-10 13:35:56,991 | INFO     | extracted standard info from prmon json
[2025-10-10 09:36:49] 2025-10-10 13:35:56,991 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 09:36:49] 2025-10-10 13:35:56,991 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 09:36:49] 2025-10-10 13:35:56,992 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 09:36:49] 2025-10-10 13:35:56,992 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 09:36:49] 2025-10-10 13:35:56,994 | INFO     | fitting pss+swap vs Time
[2025-10-10 09:36:49] 2025-10-10 13:35:56,994 | INFO     | sum of square deviations: 63666310.0
[2025-10-10 09:36:49] 2025-10-10 13:35:56,995 | INFO     | sum of deviations: -6202437787.999999
[2025-10-10 09:36:49] 2025-10-10 13:35:56,995 | INFO     | mean x: 1760101415.0
[2025-10-10 09:36:49] 2025-10-10 13:35:56,995 | INFO     | mean y: 2671793.254237288
[2025-10-10 09:36:49] 2025-10-10 13:35:56,995 | INFO     | -- intersect: 171473572605.76038
[2025-10-10 09:36:49] 2025-10-10 13:35:56,995 | INFO     | intersect: 171473572605.76038
[2025-10-10 09:36:49] 2025-10-10 13:35:56,995 | INFO     | chi2: 0.014629647985584715
[2025-10-10 09:36:49] 2025-10-10 13:35:56,996 | INFO     | -- intersect: 171473572605.76038
[2025-10-10 09:36:49] 2025-10-10 13:35:56,996 | INFO     | current memory leak: -97.42 B/s (using 59 data points, chi2=0.01)
[2025-10-10 09:36:49] 2025-10-10 13:35:56,996 | INFO     | could have reported an average CPU frequency of 2248 MHz (6 samples)
[2025-10-10 09:36:49] 2025-10-10 13:35:56,996 | INFO     | ..............................
[2025-10-10 09:36:49] 2025-10-10 13:35:56,997 | INFO     | . Timing measurements:
[2025-10-10 09:36:49] 2025-10-10 13:35:56,997 | INFO     | . get job = 0 s
[2025-10-10 09:36:49] 2025-10-10 13:35:56,997 | INFO     | . initial setup = 2 s
[2025-10-10 09:36:49] 2025-10-10 13:35:56,997 | INFO     | . payload setup = 5 s
[2025-10-10 09:36:49] 2025-10-10 13:35:56,997 | INFO     | . stage-in = 0 s
[2025-10-10 09:36:49] 2025-10-10 13:35:56,997 | INFO     | . payload execution = 4007 s
[2025-10-10 09:36:49] 2025-10-10 13:35:56,997 | INFO     | . stage-out = 0 s
[2025-10-10 09:36:49] 2025-10-10 13:35:56,997 | INFO     | . log creation = 0 s
[2025-10-10 09:36:49] 2025-10-10 13:35:56,997 | INFO     | ..............................
[2025-10-10 09:36:49] 2025-10-10 13:35:57,100 | INFO     | 
[2025-10-10 09:36:49] 2025-10-10 13:35:57,100 | INFO     | job summary report
[2025-10-10 09:36:49] 2025-10-10 13:35:57,100 | INFO     | --------------------------------------------------
[2025-10-10 09:36:49] 2025-10-10 13:35:57,100 | INFO     | PanDA job id: 6837359409
[2025-10-10 09:36:49] 2025-10-10 13:35:57,100 | INFO     | task id: 46676269
[2025-10-10 09:36:49] 2025-10-10 13:35:57,101 | INFO     | errors: (none)
[2025-10-10 09:36:49] 2025-10-10 13:35:57,101 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 09:36:49] 2025-10-10 13:35:57,101 | INFO     | pilot state: finished 
[2025-10-10 09:36:49] 2025-10-10 13:35:57,101 | INFO     | transexitcode: 0
[2025-10-10 09:36:49] 2025-10-10 13:35:57,101 | INFO     | exeerrorcode: 0
[2025-10-10 09:36:49] 2025-10-10 13:35:57,101 | INFO     | exeerrordiag: 
[2025-10-10 09:36:49] 2025-10-10 13:35:57,101 | INFO     | exitcode: 0
[2025-10-10 09:36:49] 2025-10-10 13:35:57,101 | INFO     | exitmsg: OK
[2025-10-10 09:36:49] 2025-10-10 13:35:57,102 | INFO     | cpuconsumptiontime: 29683 s
[2025-10-10 09:36:49] 2025-10-10 13:35:57,102 | INFO     | nevents: 400
[2025-10-10 09:36:49] 2025-10-10 13:35:57,102 | INFO     | neventsw: 0
[2025-10-10 09:36:49] 2025-10-10 13:35:57,102 | INFO     | pid: 1730
[2025-10-10 09:36:49] 2025-10-10 13:35:57,102 | INFO     | pgrp: 1730
[2025-10-10 09:36:49] 2025-10-10 13:35:57,102 | INFO     | corecount: 8
[2025-10-10 09:36:49] 2025-10-10 13:35:57,102 | INFO     | event service: False
[2025-10-10 09:36:49] 2025-10-10 13:35:57,102 | INFO     | sizes: {0: 2348628, 1: 2348883, 5: 2349145, 12: 2349201, 4016: 2375150, 4017: 2384331, 4021: 2384359, 4025: 2384553}
[2025-10-10 09:36:49] 2025-10-10 13:35:57,102 | INFO     | --------------------------------------------------
[2025-10-10 09:36:49] 2025-10-10 13:35:57,103 | INFO     | 
[2025-10-10 09:36:49] 2025-10-10 13:35:57,103 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 09:36:49] 2025-10-10 13:35:57,125 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,127 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,127 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,127 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,127 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,127 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,127 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,128 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,128 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,128 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 09:36:49] 2025-10-10 13:35:57,128 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,128 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 09:36:49] 2025-10-10 13:35:57,128 | INFO     | job 6837359409 has completed (purged errors)
[2025-10-10 09:36:49] 2025-10-10 13:35:57,129 | INFO     | overall cleanup function is called
[2025-10-10 09:36:49] 2025-10-10 13:35:58,137 | INFO     | --- collectZombieJob: --- 10, [1730]
[2025-10-10 09:36:49] 2025-10-10 13:35:58,137 | INFO     | zombie collector waiting for pid 1730
[2025-10-10 09:36:49] 2025-10-10 13:35:58,137 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 09:36:49] 2025-10-10 13:35:58,137 | INFO     | collected zombie processes
[2025-10-10 09:36:49] 2025-10-10 13:35:58,137 | INFO     | will attempt to kill all subprocesses of pid=1730
[2025-10-10 09:36:49] 2025-10-10 13:35:58,255 | INFO     | process IDs to be killed: [1730] (in reverse order)
[2025-10-10 09:36:49] 2025-10-10 13:35:58,312 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 09:36:49] 2025-10-10 13:35:58,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 09:36:49] 2025-10-10 13:35:58,316 | INFO     | did not find any defunct processes belonging to 1730
[2025-10-10 09:36:49] 2025-10-10 13:35:58,319 | INFO     | did not find any defunct processes belonging to 1730
[2025-10-10 09:36:49] 2025-10-10 13:35:58,319 | INFO     | ready for new job
[2025-10-10 09:36:49] 2025-10-10 13:35:58,319 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 09:36:49] 2025-10-10 13:35:58,321 | INFO     | ***************************************
[2025-10-10 09:36:49] 2025-10-10 13:35:58,321 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 09:36:49] 2025-10-10 13:35:58,321 | INFO     | ***************************************
[2025-10-10 09:36:49] 2025-10-10 13:35:58,321 | INFO     | 
[2025-10-10 09:36:49] 2025-10-10 13:35:58,322 | INFO     | architecture information:
[2025-10-10 09:36:49] 2025-10-10 13:35:58,322 | INFO     | executing command: cat /etc/os-release
[2025-10-10 09:36:49] 2025-10-10 13:35:58,337 | INFO     | cat /etc/os-release:
[2025-10-10 09:36:49] NAME="CentOS Linux"
[2025-10-10 09:36:49] VERSION="7 (Core)"
[2025-10-10 09:36:49] ID="centos"
[2025-10-10 09:36:49] ID_LIKE="rhel fedora"
[2025-10-10 09:36:49] VERSION_ID="7"
[2025-10-10 09:36:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 09:36:49] ANSI_COLOR="0;31"
[2025-10-10 09:36:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 09:36:49] HOME_URL="https://www.centos.org/"
[2025-10-10 09:36:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 09:36:49] 
[2025-10-10 09:36:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 09:36:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 09:36:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 09:36:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 09:36:49] 
[2025-10-10 09:36:49] 2025-10-10 13:35:58,337 | INFO     | ***************************************
[2025-10-10 09:36:49] 2025-10-10 13:35:58,840 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 09:36:49] 2025-10-10 13:35:58,859 | INFO     | sufficient remaining disk space (32690405376 B)
[2025-10-10 09:36:49] 2025-10-10 13:35:58,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 09:36:49] 2025-10-10 13:35:58,860 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 09:36:49] 2025-10-10 13:35:58,860 | INFO     | update_server=False
[2025-10-10 09:36:49] 2025-10-10 13:35:58,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 09:36:49] 2025-10-10 13:35:58,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 09:36:49] 2025-10-10 13:35:58,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 09:36:49] 2025-10-10 13:35:59,464 | INFO     | all job control threads have been joined
[2025-10-10 09:36:49] 2025-10-10 13:35:59,719 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 09:36:49] 2025-10-10 13:35:59,719 | INFO     | aborting loop
[2025-10-10 09:36:49] 2025-10-10 13:35:59,756 | INFO     | all payload control threads have been joined
[2025-10-10 09:36:49] 2025-10-10 13:35:59,826 | INFO     | all data control threads have been joined
[2025-10-10 09:36:49] 2025-10-10 13:35:59,865 | INFO     | [job] retrieve thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:35:59,866 | INFO     | [job] queue monitor thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:35:59,954 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:35:59,961 | INFO     | [job] validate thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:35:59,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 09:36:49] 2025-10-10 13:36:00,111 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:00,469 | INFO     | [job] control thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:00,724 | INFO     | [job] job monitor thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:00,761 | INFO     | [payload] control thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:00,831 | INFO     | [data] control thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:00,894 | INFO     | [payload] validate_post thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:00,938 | INFO     | [payload] failed_post thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:01,315 | INFO     | [data] copytool_in thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:01,317 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:01,998 | INFO     | [data] copytool_out thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:02,971 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:09,487 | INFO     | job.realtimelogging is not enabled
[2025-10-10 09:36:49] 2025-10-10 13:36:10,488 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 09:36:49] 2025-10-10 13:36:29,845 | INFO     | PID=27786 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 09:36:49] 2025-10-10 13:36:29,845 | INFO     | .. there are 2 such processes running
[2025-10-10 09:36:49] 2025-10-10 13:36:29,845 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 09:36:49] 2025-10-10 13:36:29,845 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 09:36:49] 2025-10-10 13:36:29,845 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 09:36:49] 2025-10-10 13:36:42,539 | INFO     | [monitor] cgroup control has ended
[2025-10-10 09:36:49] 2025-10-10 13:36:43,968 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274470405952)>', '<ExcThread(monitor, started 140274251458304)>']
[2025-10-10 09:36:49] 2025-10-10 13:36:44,919 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 09:36:49] 2025-10-10 13:36:44,919 | INFO     | [monitor] control thread has ended
[2025-10-10 09:36:49] 2025-10-10 13:36:48,993 | INFO     | all workflow threads have been joined
[2025-10-10 09:36:49] 2025-10-10 13:36:48,993 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 09:36:49] 2025-10-10 13:36:48,994 | INFO     | traces error code: 0
[2025-10-10 09:36:49] 2025-10-10 13:36:48,994 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 09:36:49] 2025-10-10 13:36:49,091 [wrapper] ==== pilot stdout END ====
[2025-10-10 09:36:49] 2025-10-10 13:36:49,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 09:36:49] 2025-10-10 13:36:49,099 [wrapper] pilotpid: 27786
[2025-10-10 09:36:49] 2025-10-10 13:36:49,102 [wrapper] Pilot exit status: 0
[2025-10-10 09:36:49] 2025-10-10 13:36:49,114 [wrapper] pandaids: 6837359409
[2025-10-10 09:36:49] 2025-10-10 13:36:49,154 [wrapper] cleanup supervisor_pilot 17144 27787
[2025-10-10 09:36:49] 2025-10-10 13:36:49,158 [wrapper] Test setup, not cleaning
[2025-10-10 09:36:49] 2025-10-10 13:36:49,161 [wrapper] apfmon messages muted
[2025-10-10 09:36:49] 2025-10-10 13:36:49,165 [wrapper] ==== wrapper stdout END ====
[2025-10-10 09:36:49] 2025-10-10 13:36:49,168 [wrapper] ==== wrapper stderr END ====
[2025-10-10 09:36:49]  *** Error codes and diagnostics ***
[2025-10-10 09:36:49]     "exeErrorCode": 0,
[2025-10-10 09:36:49]     "exeErrorDiag": "",
[2025-10-10 09:36:49]     "pilotErrorCode": 0,
[2025-10-10 09:36:49]     "pilotErrorDiag": "",
[2025-10-10 09:36:49]  *** Listing of results directory ***
[2025-10-10 09:36:49] total 412472
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas    557409 Oct  9 15:24 pilot3.tar.gz
[2025-10-10 09:36:49] -rwx------ 1 boincer umatlas     36292 Oct  9 15:28 runpilot2-wrapper.sh
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas      5112 Oct  9 15:28 queuedata.json
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas       100 Oct 10 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 09:36:49] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 08:28 run_atlas
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas       105 Oct 10 08:28 job.xml
[2025-10-10 09:36:49] -rw-r--r-- 2 boincer umatlas 220383642 Oct 10 08:28 EVNT.46676267._001036.pool.root.1
[2025-10-10 09:36:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 08:28 start_atlas.sh
[2025-10-10 09:36:49] drwxrwx--x 2 boincer umatlas      4096 Oct 10 08:28 shared
[2025-10-10 09:36:49] -rw-r--r-- 2 boincer umatlas    569675 Oct 10 08:28 input.tar.gz
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas         0 Oct 10 08:28 boinc_lockfile
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas      2549 Oct 10 08:28 pandaJob.out
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas    975525 Oct 10 08:28 agis_schedconf.cvmfs.json
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas   1560580 Oct 10 08:28 agis_ddmendpoints.agis.ALL.json
[2025-10-10 09:36:49] drwx------ 5 boincer umatlas      4096 Oct 10 08:28 pilot3
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas      6134 Oct 10 09:29 init_data.xml
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas 196242197 Oct 10 09:35 HITS.46676269._025068.pool.root.1
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas       529 Oct 10 09:35 boinc_task_state.xml
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas      1048 Oct 10 09:35 memory_monitor_summary.json
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas    318262 Oct 10 09:35 log.46676269._025068.job.log.tgz.1
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas      7842 Oct 10 09:35 heartbeat.json
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas        95 Oct 10 09:36 pilot_heartbeat.json
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 09:36 boinc_mmap_file
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas        27 Oct 10 09:36 wrapper_checkpoint.txt
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas      4893 Oct 10 09:36 pilotlog.txt
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas    605380 Oct 10 09:36 log.46676269._025068.job.log.1
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas       357 Oct 10 09:36 output.list
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas       620 Oct 10 09:36 runtime_log
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas    942080 Oct 10 09:36 result.tar.gz
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas      8703 Oct 10 09:36 runtime_log.err
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas       657 Oct 10 09:36 c7yKDmvUBR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmcbOMDmPgWVbm.diag
[2025-10-10 09:36:49] -rw-r--r-- 1 boincer umatlas     22349 Oct 10 09:36 stderr.txt
[2025-10-10 09:36:49] HITS file was successfully produced:
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas 196242197 Oct 10 09:35 shared/HITS.pool.root.1
[2025-10-10 09:36:49]  *** Contents of shared directory: ***
[2025-10-10 09:36:49] total 408364
[2025-10-10 09:36:49] -rw-r--r-- 2 boincer umatlas 220383642 Oct 10 08:28 ATLAS.root_0
[2025-10-10 09:36:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 08:28 start_atlas.sh
[2025-10-10 09:36:49] -rw-r--r-- 2 boincer umatlas    569675 Oct 10 08:28 input.tar.gz
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas 196242197 Oct 10 09:35 HITS.pool.root.1
[2025-10-10 09:36:49] -rw------- 1 boincer umatlas    942080 Oct 10 09:36 result.tar.gz
09:36:50 (24083): run_atlas exited; CPU time 29690.945701
09:36:50 (24083): called boinc_finish(0)

</stderr_txt>
]]>

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