Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:36:28 (1854535): wrapper (7.7.26015): starting
09:36:28 (1854535): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 09:36:28] Arguments: --nthreads 8
[2025-10-10 09:36:28] Threads: 8
[2025-10-10 09:36:28] Checking for CVMFS
[2025-10-10 09:36:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 09:36:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 09:36:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 09:36:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 09:36:31] 2.13.1.0 3059378 46007 96048 151547 1 304 37503175 40960000 10464 16776704 0 42365720 99.798 26413066 43512 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 09:36:31] CVMFS is ok
[2025-10-10 09:36:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 09:36:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 09:36:31] Further information can be found at the LHC@home message board.
[2025-10-10 09:36:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 09:36:31] Checking for apptainer binary...
[2025-10-10 09:36:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 09:36:31] Running /usr/bin/apptainer --version
[2025-10-10 09:36:31] apptainer version 1.4.3-1.el9
[2025-10-10 09:36:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 09:36:32] c-211-9.aglt2.org
[2025-10-10 09:36:32] apptainer works
[2025-10-10 09:36:32] Set ATHENA_PROC_NUMBER=8
[2025-10-10 09:36:32] Set ATHENA_CORE_NUMBER=8
[2025-10-10 09:36:33] Starting ATLAS job with PandaID=6837450331
[2025-10-10 09:36:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:27:26 (2248089): wrapper (7.7.26015): starting
13:27:26 (2248089): wrapper: running run_atlas (--nthreads 11)
[2025-10-10 13:27:26] Arguments: --nthreads 11
[2025-10-10 13:27:26] Threads: 11
[2025-10-10 13:27:26] This job has been restarted, cleaning up previous attempt
[2025-10-10 13:27:26] Checking for CVMFS
[2025-10-10 13:27:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 13:27:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 13:27:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 13:27:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 13:27:27] 2.13.1.0 3059378 46237 90128 151556 2 105 37757488 40960001 9777 16776704 0 42696369 99.800 26438538 43497 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 13:27:27] CVMFS is ok
[2025-10-10 13:27:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 13:27:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 13:27:27] Further information can be found at the LHC@home message board.
[2025-10-10 13:27:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 13:27:27] Checking for apptainer binary...
[2025-10-10 13:27:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 13:27:27] Running /usr/bin/apptainer --version
[2025-10-10 13:27:27] apptainer version 1.4.3-1.el9
[2025-10-10 13:27:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 13:27:28] c-211-9.aglt2.org
[2025-10-10 13:27:28] apptainer works
[2025-10-10 13:27:28] Set ATHENA_PROC_NUMBER=11
[2025-10-10 13:27:28] Set ATHENA_CORE_NUMBER=11
[2025-10-10 13:27:28] Starting ATLAS job with PandaID=6837450331
[2025-10-10 13:27:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 21:03:52]  *** The last 200 lines of the pilot log: ***
[2025-10-10 21:03:52] 2025-10-11 01:02:56,750 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 21:03:52] 2025-10-11 01:02:56,750 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 21:03:52] 2025-10-11 01:02:56,767 | INFO     | fitting pss+swap vs Time
[2025-10-10 21:03:52] 2025-10-11 01:02:56,768 | INFO     | sum of square deviations: 27510150252.21752
[2025-10-10 21:03:52] 2025-10-11 01:02:56,774 | INFO     | sum of deviations: 2764560124.990982
[2025-10-10 21:03:52] 2025-10-11 01:02:56,775 | INFO     | mean x: 1760130900.8766816
[2025-10-10 21:03:52] 2025-10-11 01:02:56,775 | INFO     | mean y: 2611419.34529148
[2025-10-10 21:03:52] 2025-10-11 01:02:56,775 | INFO     | -- intersect: -174268301.72914702
[2025-10-10 21:03:52] 2025-10-11 01:02:56,775 | INFO     | intersect: -174268301.72914702
[2025-10-10 21:03:52] 2025-10-11 01:02:56,776 | INFO     | chi2: 4.678862815540533
[2025-10-10 21:03:52] 2025-10-11 01:02:56,777 | INFO     | sum of square deviations: 26595301561.75971
[2025-10-10 21:03:52] 2025-10-11 01:02:56,782 | INFO     | sum of deviations: 95663582242.46931
[2025-10-10 21:03:52] 2025-10-11 01:02:56,782 | INFO     | mean x: 1760130748.3786848
[2025-10-10 21:03:52] 2025-10-11 01:02:56,782 | INFO     | mean y: 2626836.326530612
[2025-10-10 21:03:52] 2025-10-11 01:02:56,783 | INFO     | -- intersect: -6328582163.654529
[2025-10-10 21:03:52] 2025-10-11 01:02:56,783 | INFO     | intersect: -6328582163.654529
[2025-10-10 21:03:52] 2025-10-11 01:02:56,783 | INFO     | chi2: 2.3666249827090726
[2025-10-10 21:03:52] 2025-10-11 01:02:56,784 | INFO     | current chi2=2.3666249827090726 (change=49.41879948160728 %)
[2025-10-10 21:03:52] 2025-10-11 01:02:56,785 | INFO     | sum of square deviations: 25700964395.798206
[2025-10-10 21:03:52] 2025-10-11 01:02:56,794 | INFO     | sum of deviations: 94558406815.2019
[2025-10-10 21:03:52] 2025-10-11 01:02:56,794 | INFO     | mean x: 1760130595.880734
[2025-10-10 21:03:52] 2025-10-11 01:02:56,794 | INFO     | mean y: 2626647.869266055
[2025-10-10 21:03:52] 2025-10-11 01:02:56,794 | INFO     | -- intersect: -6473206024.012272
[2025-10-10 21:03:52] 2025-10-11 01:02:56,794 | INFO     | intersect: -6473206024.012272
[2025-10-10 21:03:52] 2025-10-11 01:02:56,797 | INFO     | chi2: 2.3671569494098836
[2025-10-10 21:03:52] 2025-10-11 01:02:56,797 | INFO     | current chi2=2.3671569494098836 (change=-0.02247786213268456 %)
[2025-10-10 21:03:52] 2025-10-11 01:02:56,797 | INFO     | right removable region: 435
[2025-10-10 21:03:52] 2025-10-11 01:02:56,798 | INFO     | sum of square deviations: 26595226044.000072
[2025-10-10 21:03:52] 2025-10-11 01:02:56,803 | INFO     | sum of deviations: -100895677012.52383
[2025-10-10 21:03:52] 2025-10-11 01:02:56,804 | INFO     | mean x: 1760131053.3809524
[2025-10-10 21:03:52] 2025-10-11 01:02:56,804 | INFO     | mean y: 2628643.0566893425
[2025-10-10 21:03:52] 2025-10-11 01:02:56,804 | INFO     | -- intersect: 6680128355.517393
[2025-10-10 21:03:52] 2025-10-11 01:02:56,804 | INFO     | intersect: 6680128355.517393
[2025-10-10 21:03:52] 2025-10-11 01:02:56,805 | INFO     | chi2: 2.5098765571700796
[2025-10-10 21:03:52] 2025-10-11 01:02:56,805 | INFO     | current chi2=2.5098765571700796 (change=46.35712445268344 %)
[2025-10-10 21:03:52] 2025-10-11 01:02:56,806 | INFO     | sum of square deviations: 25700813848.266193
[2025-10-10 21:03:52] 2025-10-11 01:02:56,811 | INFO     | sum of deviations: -112299949524.62845
[2025-10-10 21:03:52] 2025-10-11 01:02:56,811 | INFO     | mean x: 1760131205.8853211
[2025-10-10 21:03:52] 2025-10-11 01:02:56,811 | INFO     | mean y: 2630571.6674311925
[2025-10-10 21:03:52] 2025-10-11 01:02:56,811 | INFO     | -- intersect: 7693540546.138123
[2025-10-10 21:03:52] 2025-10-11 01:02:56,812 | INFO     | intersect: 7693540546.138123
[2025-10-10 21:03:52] 2025-10-11 01:02:56,812 | INFO     | chi2: 2.446557982694549
[2025-10-10 21:03:52] 2025-10-11 01:02:56,812 | INFO     | current chi2=2.446557982694549 (change=2.522776440723564 %)
[2025-10-10 21:03:52] 2025-10-11 01:02:56,813 | INFO     | left removable region: 20
[2025-10-10 21:03:52] 2025-10-11 01:02:56,813 | INFO     | sum of square deviations: 22163198693.600063
[2025-10-10 21:03:52] 2025-10-11 01:02:56,818 | INFO     | sum of deviations: -4586494046.799983
[2025-10-10 21:03:52] 2025-10-11 01:02:56,819 | INFO     | mean x: 1760131175.4
[2025-10-10 21:03:52] 2025-10-11 01:02:56,819 | INFO     | mean y: 2643756.58313253
[2025-10-10 21:03:52] 2025-10-11 01:02:56,819 | INFO     | -- intersect: 366888614.4289587
[2025-10-10 21:03:52] 2025-10-11 01:02:56,819 | INFO     | intersect: 366888614.4289587
[2025-10-10 21:03:52] 2025-10-11 01:02:56,820 | INFO     | chi2: 0.072414919635011
[2025-10-10 21:03:52] 2025-10-11 01:02:56,820 | INFO     | -- intersect: 366888614.4289587
[2025-10-10 21:03:52] 2025-10-11 01:02:56,820 | INFO     | current memory leak: -0.21 B/s (using 415 data points, chi2=0.07)
[2025-10-10 21:03:52] 2025-10-11 01:02:56,821 | INFO     | could have reported an average CPU frequency of 2528 MHz (18 samples)
[2025-10-10 21:03:52] 2025-10-11 01:02:56,821 | INFO     | ..............................
[2025-10-10 21:03:52] 2025-10-11 01:02:56,821 | INFO     | . Timing measurements:
[2025-10-10 21:03:52] 2025-10-11 01:02:56,821 | INFO     | . get job = 0 s
[2025-10-10 21:03:52] 2025-10-11 01:02:56,822 | INFO     | . initial setup = 3 s
[2025-10-10 21:03:52] 2025-10-11 01:02:56,822 | INFO     | . payload setup = 16 s
[2025-10-10 21:03:52] 2025-10-11 01:02:56,822 | INFO     | . stage-in = 0 s
[2025-10-10 21:03:52] 2025-10-11 01:02:56,822 | INFO     | . payload execution = 27217 s
[2025-10-10 21:03:52] 2025-10-11 01:02:56,822 | INFO     | . stage-out = 8 s
[2025-10-10 21:03:52] 2025-10-11 01:02:56,822 | INFO     | . log creation = 2 s
[2025-10-10 21:03:52] 2025-10-11 01:02:56,822 | INFO     | ..............................
[2025-10-10 21:03:52] 2025-10-11 01:02:56,951 | INFO     | 
[2025-10-10 21:03:52] 2025-10-11 01:02:56,983 | INFO     | job summary report
[2025-10-10 21:03:52] 2025-10-11 01:02:56,984 | INFO     | --------------------------------------------------
[2025-10-10 21:03:52] 2025-10-11 01:02:56,984 | INFO     | PanDA job id: 6837450331
[2025-10-10 21:03:52] 2025-10-11 01:02:56,984 | INFO     | task id: 46676269
[2025-10-10 21:03:52] 2025-10-11 01:02:56,984 | INFO     | errors: (none)
[2025-10-10 21:03:52] 2025-10-11 01:02:56,984 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 21:03:52] 2025-10-11 01:02:56,984 | INFO     | pilot state: finished 
[2025-10-10 21:03:52] 2025-10-11 01:02:56,984 | INFO     | transexitcode: 0
[2025-10-10 21:03:52] 2025-10-11 01:02:56,984 | INFO     | exeerrorcode: 0
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | exeerrordiag: 
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | exitcode: 0
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | exitmsg: OK
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | cpuconsumptiontime: 62328 s
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | nevents: 400
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | neventsw: 0
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | pid: 2268224
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | pgrp: 2268224
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | corecount: 11
[2025-10-10 21:03:52] 2025-10-11 01:02:56,985 | INFO     | event service: False
[2025-10-10 21:03:52] 2025-10-11 01:02:56,986 | INFO     | sizes: {0: 2348686, 1: 2348885, 2: 2348885, 8: 2349175, 12: 2349203, 27235: 2386261, 27236: 2386388, 27246: 2395498, 27279: 2395636}
[2025-10-10 21:03:52] 2025-10-11 01:02:56,986 | INFO     | --------------------------------------------------
[2025-10-10 21:03:52] 2025-10-11 01:02:56,986 | INFO     | 
[2025-10-10 21:03:52] 2025-10-11 01:02:56,986 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-10 21:03:52] 2025-10-11 01:02:56,993 | INFO     | time since job start (27300s) is within the limit (172800.0s)
[2025-10-10 21:03:52] 2025-10-11 01:02:57,095 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,095 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,096 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,096 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,096 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,096 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,097 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,097 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,097 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,098 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 21:03:52] 2025-10-11 01:02:57,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,140 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 21:03:52] 2025-10-11 01:02:57,141 | INFO     | job 6837450331 has completed (purged errors)
[2025-10-10 21:03:52] 2025-10-11 01:02:57,141 | INFO     | overall cleanup function is called
[2025-10-10 21:03:52] 2025-10-11 01:02:58,150 | INFO     | --- collectZombieJob: --- 10, [2268224]
[2025-10-10 21:03:52] 2025-10-11 01:02:58,150 | INFO     | zombie collector waiting for pid 2268224
[2025-10-10 21:03:52] 2025-10-11 01:02:58,151 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 21:03:52] 2025-10-11 01:02:58,151 | INFO     | collected zombie processes
[2025-10-10 21:03:52] 2025-10-11 01:02:58,151 | INFO     | will attempt to kill all subprocesses of pid=2268224
[2025-10-10 21:03:52] 2025-10-11 01:02:59,295 | INFO     | process IDs to be killed: [2268224] (in reverse order)
[2025-10-10 21:03:52] 2025-10-11 01:02:59,560 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 21:03:52] 2025-10-11 01:02:59,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 21:03:52] 2025-10-11 01:02:59,577 | INFO     | did not find any defunct processes belonging to 2268224
[2025-10-10 21:03:52] 2025-10-11 01:02:59,589 | INFO     | did not find any defunct processes belonging to 2268224
[2025-10-10 21:03:52] 2025-10-11 01:02:59,590 | INFO     | ready for new job
[2025-10-10 21:03:52] 2025-10-11 01:02:59,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 21:03:52] 2025-10-11 01:02:59,593 | INFO     | ***************************************
[2025-10-10 21:03:52] 2025-10-11 01:02:59,593 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 21:03:52] 2025-10-11 01:02:59,593 | INFO     | ***************************************
[2025-10-10 21:03:52] 2025-10-11 01:02:59,593 | INFO     | 
[2025-10-10 21:03:52] 2025-10-11 01:02:59,599 | INFO     | architecture information:
[2025-10-10 21:03:52] 2025-10-11 01:02:59,600 | INFO     | executing command: cat /etc/os-release
[2025-10-10 21:03:52] 2025-10-11 01:02:59,616 | INFO     | cat /etc/os-release:
[2025-10-10 21:03:52] NAME="CentOS Linux"
[2025-10-10 21:03:52] VERSION="7 (Core)"
[2025-10-10 21:03:52] ID="centos"
[2025-10-10 21:03:52] ID_LIKE="rhel fedora"
[2025-10-10 21:03:52] VERSION_ID="7"
[2025-10-10 21:03:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 21:03:52] ANSI_COLOR="0;31"
[2025-10-10 21:03:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 21:03:52] HOME_URL="https://www.centos.org/"
[2025-10-10 21:03:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 21:03:52] 
[2025-10-10 21:03:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 21:03:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 21:03:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 21:03:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 21:03:52] 
[2025-10-10 21:03:52] 2025-10-11 01:02:59,616 | INFO     | ***************************************
[2025-10-10 21:03:52] 2025-10-11 01:03:00,119 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-10 21:03:52] 2025-10-11 01:03:00,351 | INFO     | sufficient remaining disk space (63217598464 B)
[2025-10-10 21:03:52] 2025-10-11 01:03:00,351 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 21:03:52] 2025-10-11 01:03:00,351 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 21:03:52] 2025-10-11 01:03:00,352 | INFO     | update_server=False
[2025-10-10 21:03:52] 2025-10-11 01:03:00,352 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 21:03:52] 2025-10-11 01:03:00,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 21:03:52] 2025-10-11 01:03:00,391 | INFO     | all job control threads have been joined
[2025-10-10 21:03:52] 2025-10-11 01:03:00,615 | INFO     | all payload control threads have been joined
[2025-10-10 21:03:52] 2025-10-11 01:03:00,669 | INFO     | all data control threads have been joined
[2025-10-10 21:03:52] 2025-10-11 01:03:01,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 21:03:52] 2025-10-11 01:03:01,097 | INFO     | aborting loop
[2025-10-10 21:03:52] 2025-10-11 01:03:01,357 | INFO     | [job] retrieve thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:01,391 | INFO     | [payload] validate_post thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:01,397 | INFO     | [job] control thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:01,621 | INFO     | [payload] control thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:01,675 | INFO     | [data] control thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:01,703 | INFO     | [payload] failed_post thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:01,949 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 21:03:52] 2025-10-11 01:03:02,031 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:02,102 | INFO     | [job] validate thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:02,114 | INFO     | [job] job monitor thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:02,187 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 21:03:52] 2025-10-11 01:03:02,379 | INFO     | [data] copytool_out thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:02,418 | INFO     | [data] copytool_in thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:02,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:02,545 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:02,603 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:02,968 | INFO     | [job] queue monitor thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:06,238 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 21:03:52] 2025-10-11 01:03:30,592 | INFO     | PID=2255456 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 21:03:52] 2025-10-11 01:03:30,592 | INFO     | .. there are 9 such processes running
[2025-10-10 21:03:52] 2025-10-11 01:03:30,593 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 21:03:52] 2025-10-11 01:03:30,593 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 21:03:52] 2025-10-11 01:03:30,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 21:03:52] 2025-10-11 01:03:43,283 | INFO     | [monitor] cgroup control has ended
[2025-10-10 21:03:52] 2025-10-11 01:03:44,956 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140024609158976)>', '<ExcThread(monitor, started 140023978518272)>']
[2025-10-10 21:03:52] 2025-10-11 01:03:45,682 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 21:03:52] 2025-10-11 01:03:45,682 | INFO     | [monitor] control thread has ended
[2025-10-10 21:03:52] 2025-10-11 01:03:49,982 | INFO     | all workflow threads have been joined
[2025-10-10 21:03:52] 2025-10-11 01:03:49,982 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 21:03:52] 2025-10-11 01:03:49,983 | INFO     | traces error code: 0
[2025-10-10 21:03:52] 2025-10-11 01:03:49,983 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 21:03:52] 2025-10-11 01:03:50,769 [wrapper] ==== pilot stdout END ====
[2025-10-10 21:03:52] 2025-10-11 01:03:50,773 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 21:03:52] 2025-10-11 01:03:50,778 [wrapper] pilotpid: 2255456
[2025-10-10 21:03:52] 2025-10-11 01:03:50,782 [wrapper] Pilot exit status: 0
[2025-10-10 21:03:52] 2025-10-11 01:03:51,032 [wrapper] pandaids: 6837450331 6837450331
[2025-10-10 21:03:52] 2025-10-11 01:03:51,097 [wrapper] cleanup supervisor_pilot 2859546 2255457
[2025-10-10 21:03:52] 2025-10-11 01:03:51,100 [wrapper] Test setup, not cleaning
[2025-10-10 21:03:52] 2025-10-11 01:03:51,114 [wrapper] apfmon messages muted
[2025-10-10 21:03:52] 2025-10-11 01:03:51,122 [wrapper] ==== wrapper stdout END ====
[2025-10-10 21:03:52] 2025-10-11 01:03:51,125 [wrapper] ==== wrapper stderr END ====
[2025-10-10 21:03:52]  *** Error codes and diagnostics ***
[2025-10-10 21:03:52]     "exeErrorCode": 0,
[2025-10-10 21:03:52]     "exeErrorDiag": "",
[2025-10-10 21:03:52]     "pilotErrorCode": 0,
[2025-10-10 21:03:52]     "pilotErrorDiag": "",
[2025-10-10 21:03:52]  *** Listing of results directory ***
[2025-10-10 21:03:52] total 634512
[2025-10-10 21:03:52] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 01:42 pilot3.tar.gz
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 01:55 queuedata.json
[2025-10-10 21:03:52] -rwx------. 1 boincer umatlas     36292 Oct 10 01:55 runpilot2-wrapper.sh
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas       100 Oct 10 09:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 21:03:52] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 09:36 run_atlas
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas       105 Oct 10 09:36 job.xml
[2025-10-10 21:03:52] -rw-r--r--. 3 boincer umatlas 222968726 Oct 10 09:36 EVNT.46676267._001357.pool.root.1
[2025-10-10 21:03:52] -rw-r--r--. 3 boincer umatlas 222968726 Oct 10 09:36 ATLAS.root_0
[2025-10-10 21:03:52] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 09:36 start_atlas.sh
[2025-10-10 21:03:52] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 09:36 shared
[2025-10-10 21:03:52] -rw-r--r--. 2 boincer umatlas    569679 Oct 10 09:36 input.tar.gz
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas         0 Oct 10 09:36 boinc_lockfile
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 13:27 pandaJob.out
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas    975525 Oct 10 13:27 agis_schedconf.cvmfs.json
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas      6613 Oct 10 20:56 init_data.xml
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas 191310295 Oct 10 20:58 HITS.46676269._033337.pool.root.1
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas       531 Oct 10 20:58 boinc_task_state.xml
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas      1055 Oct 10 21:02 memory_monitor_summary.json
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas   1560580 Oct 10 21:02 agis_ddmendpoints.agis.ALL.json
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas    680721 Oct 10 21:02 log.46676269._033337.job.log.tgz.1
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas      7854 Oct 10 21:02 heartbeat.json
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas        96 Oct 10 21:03 pilot_heartbeat.json
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas        28 Oct 10 21:03 wrapper_checkpoint.txt
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas      4823 Oct 10 21:03 pilotlog.txt
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas   3614678 Oct 10 21:03 log.46676269._033337.job.log.1
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas       357 Oct 10 21:03 output.list
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas       620 Oct 10 21:03 runtime_log
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas   4311040 Oct 10 21:03 result.tar.gz
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 21:03 boinc_mmap_file
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas      8786 Oct 10 21:03 runtime_log.err
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas       788 Oct 10 21:03 CYiNDmFHLR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPWcNDmdbXbYm.diag
[2025-10-10 21:03:52] -rw-r--r--. 1 boincer umatlas     23174 Oct 10 21:03 stderr.txt
[2025-10-10 21:03:52] HITS file was successfully produced:
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas 191310295 Oct 10 20:58 shared/HITS.pool.root.1
[2025-10-10 21:03:52]  *** Contents of shared directory: ***
[2025-10-10 21:03:52] total 409364
[2025-10-10 21:03:52] -rw-r--r--. 3 boincer umatlas 222968726 Oct 10 09:36 ATLAS.root_0
[2025-10-10 21:03:52] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 09:36 start_atlas.sh
[2025-10-10 21:03:52] -rw-r--r--. 2 boincer umatlas    569679 Oct 10 09:36 input.tar.gz
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas 191310295 Oct 10 20:58 HITS.pool.root.1
[2025-10-10 21:03:52] -rw-------. 1 boincer umatlas   4311040 Oct 10 21:03 result.tar.gz
21:03:54 (2248089): run_atlas exited; CPU time 62993.800352
21:03:54 (2248089): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN