Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:19:30 (20573): wrapper (7.7.26015): starting
09:19:30 (20573): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 09:19:30] Arguments: --nthreads 4
[2025-10-13 09:19:30] Threads: 4
[2025-10-13 09:19:30] Checking for CVMFS
[2025-10-13 09:19:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:19:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:19:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:19:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:19:30] 2.9.2.0 3113 13 49556 151653 3 5 28830707 36864000 828 130560 0 48428 99.963 4066 1323 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 09:19:30] CVMFS is ok
[2025-10-13 09:19:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 09:19:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 09:19:30] Further information can be found at the LHC@home message board.
[2025-10-13 09:19:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:19:30] Checking for apptainer binary...
[2025-10-13 09:19:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:19:30] Running /usr/bin/apptainer --version
[2025-10-13 09:19:30] apptainer version 1.4.1-1.1
[2025-10-13 09:19:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:19:30] thA325
[2025-10-13 09:19:30] apptainer works
[2025-10-13 09:19:30] Set ATHENA_PROC_NUMBER=4
[2025-10-13 09:19:30] Set ATHENA_CORE_NUMBER=4
[2025-10-13 09:19:30] Starting ATLAS job with PandaID=6837555365
[2025-10-13 09:19:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:29:57]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:29:57] 2025-10-13 08:29:25,880 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | job 6837555365 has completed (purged errors)
[2025-10-13 10:29:57] 2025-10-13 08:29:25,881 | INFO     | overall cleanup function is called
[2025-10-13 10:29:57] 2025-10-13 08:29:26,888 | INFO     | --- collectZombieJob: --- 10, [31260]
[2025-10-13 10:29:57] 2025-10-13 08:29:26,888 | INFO     | zombie collector waiting for pid 31260
[2025-10-13 10:29:57] 2025-10-13 08:29:26,888 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:29:57] 2025-10-13 08:29:26,888 | INFO     | collected zombie processes
[2025-10-13 10:29:57] 2025-10-13 08:29:26,888 | INFO     | will attempt to kill all subprocesses of pid=31260
[2025-10-13 10:29:57] 2025-10-13 08:29:26,931 | INFO     | process IDs to be killed: [31260] (in reverse order)
[2025-10-13 10:29:57] 2025-10-13 08:29:26,960 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:29:57] 2025-10-13 08:29:26,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:29:57] 2025-10-13 08:29:26,962 | INFO     | did not find any defunct processes belonging to 31260
[2025-10-13 10:29:57] 2025-10-13 08:29:26,963 | INFO     | did not find any defunct processes belonging to 31260
[2025-10-13 10:29:57] 2025-10-13 08:29:26,963 | INFO     | ready for new job
[2025-10-13 10:29:57] 2025-10-13 08:29:26,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:29:57] 2025-10-13 08:29:26,964 | INFO     | ***************************************
[2025-10-13 10:29:57] 2025-10-13 08:29:26,964 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:29:57] 2025-10-13 08:29:26,964 | INFO     | ***************************************
[2025-10-13 10:29:57] 2025-10-13 08:29:26,964 | INFO     | 
[2025-10-13 10:29:57] 2025-10-13 08:29:26,965 | INFO     | architecture information:
[2025-10-13 10:29:57] 2025-10-13 08:29:26,965 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:29:57] 2025-10-13 08:29:26,976 | INFO     | cat /etc/os-release:
[2025-10-13 10:29:57] NAME="CentOS Linux"
[2025-10-13 10:29:57] VERSION="7 (Core)"
[2025-10-13 10:29:57] ID="centos"
[2025-10-13 10:29:57] ID_LIKE="rhel fedora"
[2025-10-13 10:29:57] VERSION_ID="7"
[2025-10-13 10:29:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:29:57] ANSI_COLOR="0;31"
[2025-10-13 10:29:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:29:57] HOME_URL="https://www.centos.org/"
[2025-10-13 10:29:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:29:57] 
[2025-10-13 10:29:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:29:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:29:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:29:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:29:57] 
[2025-10-13 10:29:57] 2025-10-13 08:29:26,976 | INFO     | ***************************************
[2025-10-13 10:29:57] 2025-10-13 08:29:27,480 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 10:29:57] 2025-10-13 08:29:27,495 | INFO     | sufficient remaining disk space (231142850560 B)
[2025-10-13 10:29:57] 2025-10-13 08:29:27,495 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:29:57] 2025-10-13 08:29:27,495 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:29:57] 2025-10-13 08:29:27,495 | INFO     | update_server=False
[2025-10-13 10:29:57] 2025-10-13 08:29:27,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:29:57] 2025-10-13 08:29:27,495 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:29:57] 2025-10-13 08:29:27,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:29:57] 2025-10-13 08:29:27,495 | INFO     | aborting loop
[2025-10-13 10:29:57] 2025-10-13 08:29:27,846 | INFO     | all job control threads have been joined
[2025-10-13 10:29:57] 2025-10-13 08:29:28,079 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:29:57] 2025-10-13 08:29:28,142 | INFO     | all payload control threads have been joined
[2025-10-13 10:29:57] 2025-10-13 08:29:28,204 | INFO     | all data control threads have been joined
[2025-10-13 10:29:57] 2025-10-13 08:29:28,501 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:28,501 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:28,501 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:28,720 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:28,852 | INFO     | [job] control thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:29,148 | INFO     | [payload] control thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:29,164 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:29,210 | INFO     | [data] control thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:29,646 | INFO     | [job] validate thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:29,698 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:29,723 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:29,728 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:29,802 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:30,081 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:30,617 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:29:57] 2025-10-13 08:29:34,624 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:37,941 | INFO     | job.realtimelogging is not enabled
[2025-10-13 10:29:57] 2025-10-13 08:29:38,947 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:29:57] 2025-10-13 08:29:44,095 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:29:57] 2025-10-13 08:29:45,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140076512094016)>', '<ExcThread(monitor, started 140076147250944)>']
[2025-10-13 10:29:57] 2025-10-13 08:29:50,719 | INFO     | all workflow threads have been joined
[2025-10-13 10:29:57] 2025-10-13 08:29:50,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:29:57] 2025-10-13 08:29:50,719 | INFO     | traces error code: 0
[2025-10-13 10:29:57] 2025-10-13 08:29:50,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:29:57] 2025-10-13 08:29:57,580 | INFO     | PID=24694 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 10:29:57] 2025-10-13 08:29:57,580 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:29:57] 2025-10-13 08:29:57,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:29:57] 2025-10-13 08:29:57,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:29:57] 2025-10-13 08:29:57,580 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:29:57] 2025-10-13 08:29:57,580 | INFO     | [monitor] control thread has ended
[2025-10-13 10:29:57] 2025-10-13 08:29:57,642 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:29:57] 2025-10-13 08:29:57,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:29:57] 2025-10-13 08:29:57,649 [wrapper] pilotpid: 24694
[2025-10-13 10:29:57] 2025-10-13 08:29:57,652 [wrapper] Pilot exit status: 0
[2025-10-13 10:29:57] 2025-10-13 08:29:57,663 [wrapper] pandaids: 6837555365
[2025-10-13 10:29:57] 2025-10-13 08:29:57,682 [wrapper] cleanup supervisor_pilot   40926 24695
[2025-10-13 10:29:57] 2025-10-13 08:29:57,686 [wrapper] Test setup, not cleaning
[2025-10-13 10:29:57] 2025-10-13 08:29:57,689 [wrapper] apfmon messages muted
[2025-10-13 10:29:57] 2025-10-13 08:29:57,693 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:29:57] 2025-10-13 08:29:57,696 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:29:57]  *** Error codes and diagnostics ***
[2025-10-13 10:29:57]     "exeErrorCode": 0,
[2025-10-13 10:29:57]     "exeErrorDiag": "",
[2025-10-13 10:29:57]     "pilotErrorCode": 0,
[2025-10-13 10:29:57]     "pilotErrorDiag": "",
[2025-10-13 10:29:57]  *** Listing of results directory ***
[2025-10-13 10:29:57] total 416188
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc    557409 Oct 10 11:06 pilot3.tar.gz
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc      5112 Oct 10 11:20 queuedata.json
[2025-10-13 10:29:57] -rwx------ 1 boinc boinc     36292 Oct 10 11:21 runpilot2-wrapper.sh
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc       100 Oct 13 09:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:29:57] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 09:19 run_atlas
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc       105 Oct 13 09:19 job.xml
[2025-10-13 10:29:57] -rw-r--r-- 2 boinc boinc 222554028 Oct 13 09:19 EVNT.46676267._001460.pool.root.1
[2025-10-13 10:29:57] -rw-r--r-- 2 boinc boinc    569684 Oct 13 09:19 input.tar.gz
[2025-10-13 10:29:57] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:19 start_atlas.sh
[2025-10-13 10:29:57] drwxrwx--x 2 boinc boinc      4096 Oct 13 09:19 shared
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:19 boinc_setup_complete
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc      6368 Oct 13 09:19 init_data.xml
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc         0 Oct 13 09:19 boinc_lockfile
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc      2549 Oct 13 09:19 pandaJob.out
[2025-10-13 10:29:57] -rw------- 1 boinc boinc    972849 Oct 13 09:19 agis_schedconf.cvmfs.json
[2025-10-13 10:29:57] -rw------- 1 boinc boinc   1560580 Oct 13 09:19 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:29:57] drwx------ 5 boinc boinc      4096 Oct 13 09:19 pilot3
[2025-10-13 10:29:57] -rw------- 1 boinc boinc        95 Oct 13 10:28 pilot_heartbeat.json
[2025-10-13 10:29:57] -rw------- 1 boinc boinc 197996142 Oct 13 10:28 HITS.46676269._035913.pool.root.1
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc       529 Oct 13 10:29 boinc_task_state.xml
[2025-10-13 10:29:57] -rw------- 1 boinc boinc      1016 Oct 13 10:29 memory_monitor_summary.json
[2025-10-13 10:29:57] -rw------- 1 boinc boinc    245679 Oct 13 10:29 log.46676269._035913.job.log.tgz.1
[2025-10-13 10:29:57] -rw------- 1 boinc boinc      7761 Oct 13 10:29 heartbeat.json
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc      8192 Oct 13 10:29 boinc_mmap_file
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc        27 Oct 13 10:29 wrapper_checkpoint.txt
[2025-10-13 10:29:57] -rw------- 1 boinc boinc       745 Oct 13 10:29 pilotlog.txt
[2025-10-13 10:29:57] -rw------- 1 boinc boinc    621287 Oct 13 10:29 log.46676269._035913.job.log.1
[2025-10-13 10:29:57] -rw------- 1 boinc boinc       357 Oct 13 10:29 output.list
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:29 runtime_log
[2025-10-13 10:29:57] -rw------- 1 boinc boinc    890880 Oct 13 10:29 result.tar.gz
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc      8777 Oct 13 10:29 runtime_log.err
[2025-10-13 10:29:57] -rw------- 1 boinc boinc       658 Oct 13 10:29 h93KDmaUOR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnucNDmS4kTTm.diag
[2025-10-13 10:29:57] -rw-r--r-- 1 boinc boinc     12313 Oct 13 10:29 stderr.txt
[2025-10-13 10:29:57] HITS file was successfully produced:
[2025-10-13 10:29:57] -rw------- 1 boinc boinc 197996142 Oct 13 10:28 shared/HITS.pool.root.1
[2025-10-13 10:29:57]  *** Contents of shared directory: ***
[2025-10-13 10:29:57] total 412152
[2025-10-13 10:29:57] -rw-r--r-- 2 boinc boinc 222554028 Oct 13 09:19 ATLAS.root_0
[2025-10-13 10:29:57] -rw-r--r-- 2 boinc boinc    569684 Oct 13 09:19 input.tar.gz
[2025-10-13 10:29:57] -rw-r--r-- 2 boinc boinc     15120 Oct 13 09:19 start_atlas.sh
[2025-10-13 10:29:57] -rw------- 1 boinc boinc 197996142 Oct 13 10:28 HITS.pool.root.1
[2025-10-13 10:29:57] -rw------- 1 boinc boinc    890880 Oct 13 10:29 result.tar.gz
10:29:59 (20573): run_atlas exited; CPU time 15715.159848
10:29:59 (20573): called boinc_finish(0)

</stderr_txt>
]]>

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