Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:25:07 (338916): wrapper (7.7.26015): starting
07:25:07 (338916): wrapper: running run_atlas (--nthreads 11)
[2025-10-10 07:25:07] Arguments: --nthreads 11
[2025-10-10 07:25:07] Threads: 11
[2025-10-10 07:25:07] Checking for CVMFS
[2025-10-10 07:25:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 07:25:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 07:25:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 07:25:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 07:25:08] 2.13.2.0 2216807 126299 423308 151543 0 196 32068246 40960001 6562 16776704 30 247148275 99.705 199364208 21780 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 07:25:08] CVMFS is ok
[2025-10-10 07:25:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 07:25:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 07:25:08] Further information can be found at the LHC@home message board.
[2025-10-10 07:25:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 07:25:08] Checking for apptainer binary...
[2025-10-10 07:25:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 07:25:08] Running /usr/bin/apptainer --version
[2025-10-10 07:25:08] apptainer version 1.4.3-1.el9
[2025-10-10 07:25:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 07:25:08] c7-11-11.aglt2.org
[2025-10-10 07:25:08] apptainer works
[2025-10-10 07:25:08] Set ATHENA_PROC_NUMBER=11
[2025-10-10 07:25:08] Set ATHENA_CORE_NUMBER=11
[2025-10-10 07:25:08] Starting ATLAS job with PandaID=6837378063
[2025-10-10 07:25:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 08:13:29]  *** The last 200 lines of the pilot log: ***
[2025-10-10 08:13:29]  replicas=None
[2025-10-10 08:13:29]  scope=mc23_13p6TeV
[2025-10-10 08:13:29]  status=None
[2025-10-10 08:13:29]  status_code=0
[2025-10-10 08:13:29]  storage_token=
[2025-10-10 08:13:29]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6837378063/log.46676269._029722.job.log.tgz.1
[2025-10-10 08:13:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/3e/log.46676269._029722.job.log.tgz.1
[2025-10-10 08:13:29]  workdir=None
[2025-10-10 08:13:29] ]
[2025-10-10 08:13:29] 2025-10-10 12:12:27,703 | INFO     | transferring file log.46676269._029722.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6837378063/log.46676269._029722.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 08:13:29] 2025-10-10 12:12:27,703 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6837378063/log.46676269._029722.job.log.tgz.1 /tmp/boinchome/slots/1/log.46676269._029722.job
[2025-10-10 08:13:29] 2025-10-10 12:12:27,727 | INFO     | adding to output.list: log.46676269._029722.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/3e/log.46676269._029722.job.log.tg
[2025-10-10 08:13:29] 2025-10-10 12:12:27,728 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 08:13:29] 2025-10-10 12:12:27,728 | INFO     | summary of transferred files:
[2025-10-10 08:13:29] 2025-10-10 12:12:27,728 | INFO     |  -- lfn=log.46676269._029722.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 08:13:29] 2025-10-10 12:12:27,729 | INFO     | stage-out finished correctly
[2025-10-10 08:13:29] 2025-10-10 12:12:27,862 | INFO     | time since job start (2827s) is within the limit (172800.0s)
[2025-10-10 08:13:29] 2025-10-10 12:12:29,326 | INFO     | monitor loop #213: job 0:6837378063 is in state 'finished'
[2025-10-10 08:13:29] 2025-10-10 12:12:29,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 08:13:29] 2025-10-10 12:12:29,867 | INFO     | time since job start (2829s) is within the limit (172800.0s)
[2025-10-10 08:13:29] 2025-10-10 12:12:30,517 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 08:13:29] 2025-10-10 12:12:30,867 | INFO     | job 6837378063 has state=finished
[2025-10-10 08:13:29] 2025-10-10 12:12:30,867 | INFO     | preparing for final server update for job 6837378063 in state='finished'
[2025-10-10 08:13:29] 2025-10-10 12:12:30,867 | INFO     | this job has now completed (state=finished)
[2025-10-10 08:13:29] 2025-10-10 12:12:30,867 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 08:13:29] 2025-10-10 12:12:30,868 | INFO     | log transfer has been attempted: DONE
[2025-10-10 08:13:29] 2025-10-10 12:12:30,868 | INFO     | job 6837378063 has finished - writing final server update
[2025-10-10 08:13:29] 2025-10-10 12:12:30,868 | INFO     | total number of processed events: 400 (read)
[2025-10-10 08:13:29] 2025-10-10 12:12:30,868 | INFO     | executing command: lscpu
[2025-10-10 08:13:29] 2025-10-10 12:12:30,933 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 08:13:29] 2025-10-10 12:12:31,829 | INFO     | monitor loop #214: job 0:6837378063 is in state 'finished'
[2025-10-10 08:13:29] 2025-10-10 12:12:31,829 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 08:13:29] 2025-10-10 12:12:31,874 | INFO     | time since job start (2831s) is within the limit (172800.0s)
[2025-10-10 08:13:29] 2025-10-10 12:12:33,880 | INFO     | time since job start (2833s) is within the limit (172800.0s)
[2025-10-10 08:13:29] 2025-10-10 12:12:34,332 | INFO     | monitor loop #215: job 0:6837378063 is in state 'finished'
[2025-10-10 08:13:29] 2025-10-10 12:12:34,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 08:13:29] 2025-10-10 12:12:35,175 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 08:13:29] 2025-10-10 12:12:35,192 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3212.5530156249993
[2025-10-10 08:13:29] 2025-10-10 12:12:35,202 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6837378063/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 08:13:29] 2025-10-10 12:12:35,203 | INFO     | extracted standard info from prmon json
[2025-10-10 08:13:29] 2025-10-10 12:12:35,203 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 08:13:29] 2025-10-10 12:12:35,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 08:13:29] 2025-10-10 12:12:35,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 08:13:29] 2025-10-10 12:12:35,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 08:13:29] 2025-10-10 12:12:35,204 | INFO     | fitting pss+swap vs Time
[2025-10-10 08:13:29] 2025-10-10 12:12:35,205 | INFO     | sum of square deviations: 18381740.0
[2025-10-10 08:13:29] 2025-10-10 12:12:35,205 | INFO     | sum of deviations: -207263116.00000012
[2025-10-10 08:13:29] 2025-10-10 12:12:35,205 | INFO     | mean x: 1760097011.0
[2025-10-10 08:13:29] 2025-10-10 12:12:35,205 | INFO     | mean y: 2338631.871794872
[2025-10-10 08:13:29] 2025-10-10 12:12:35,205 | INFO     | -- intersect: 19848293963.74715
[2025-10-10 08:13:29] 2025-10-10 12:12:35,205 | INFO     | intersect: 19848293963.74715
[2025-10-10 08:13:29] 2025-10-10 12:12:35,205 | INFO     | chi2: 0.007505664716253738
[2025-10-10 08:13:29] 2025-10-10 12:12:35,205 | INFO     | -- intersect: 19848293963.74715
[2025-10-10 08:13:29] 2025-10-10 12:12:35,205 | INFO     | current memory leak: -11.28 B/s (using 39 data points, chi2=0.01)
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | could have reported an average CPU frequency of 3228 MHz (5 samples)
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | ..............................
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | . Timing measurements:
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | . get job = 0 s
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | . initial setup = 2 s
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | . payload setup = 5 s
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | . stage-in = 0 s
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | . payload execution = 2801 s
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | . stage-out = 0 s
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | . log creation = 0 s
[2025-10-10 08:13:29] 2025-10-10 12:12:35,206 | INFO     | ..............................
[2025-10-10 08:13:29] 2025-10-10 12:12:35,717 | INFO     | 
[2025-10-10 08:13:29] 2025-10-10 12:12:35,718 | INFO     | job summary report
[2025-10-10 08:13:29] 2025-10-10 12:12:35,718 | INFO     | --------------------------------------------------
[2025-10-10 08:13:29] 2025-10-10 12:12:35,718 | INFO     | PanDA job id: 6837378063
[2025-10-10 08:13:29] 2025-10-10 12:12:35,718 | INFO     | task id: 46676269
[2025-10-10 08:13:29] 2025-10-10 12:12:35,718 | INFO     | errors: (none)
[2025-10-10 08:13:29] 2025-10-10 12:12:35,718 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 08:13:29] 2025-10-10 12:12:35,718 | INFO     | pilot state: finished 
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | transexitcode: 0
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | exeerrorcode: 0
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | exeerrordiag: 
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | exitcode: 0
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | exitmsg: OK
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | cpuconsumptiontime: 26366 s
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | nevents: 400
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | neventsw: 0
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | pid: 349108
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | pgrp: 349108
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | corecount: 11
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | event service: False
[2025-10-10 08:13:29] 2025-10-10 12:12:35,719 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 2811: 2374615, 2812: 2383613, 2815: 2383797, 2819: 2384023}
[2025-10-10 08:13:29] 2025-10-10 12:12:35,720 | INFO     | --------------------------------------------------
[2025-10-10 08:13:29] 2025-10-10 12:12:35,720 | INFO     | 
[2025-10-10 08:13:29] 2025-10-10 12:12:35,720 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-10 08:13:29] 2025-10-10 12:12:35,741 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,741 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,741 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,741 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,742 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,743 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,743 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 08:13:29] 2025-10-10 12:12:35,743 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,743 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 08:13:29] 2025-10-10 12:12:35,743 | INFO     | job 6837378063 has completed (purged errors)
[2025-10-10 08:13:29] 2025-10-10 12:12:35,743 | INFO     | overall cleanup function is called
[2025-10-10 08:13:29] 2025-10-10 12:12:36,751 | INFO     | --- collectZombieJob: --- 10, [349108]
[2025-10-10 08:13:29] 2025-10-10 12:12:36,751 | INFO     | zombie collector waiting for pid 349108
[2025-10-10 08:13:29] 2025-10-10 12:12:36,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 08:13:29] 2025-10-10 12:12:36,752 | INFO     | collected zombie processes
[2025-10-10 08:13:29] 2025-10-10 12:12:36,752 | INFO     | will attempt to kill all subprocesses of pid=349108
[2025-10-10 08:13:29] 2025-10-10 12:12:37,038 | INFO     | process IDs to be killed: [349108] (in reverse order)
[2025-10-10 08:13:29] 2025-10-10 12:12:37,138 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 08:13:29] 2025-10-10 12:12:37,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 08:13:29] 2025-10-10 12:12:37,148 | INFO     | did not find any defunct processes belonging to 349108
[2025-10-10 08:13:29] 2025-10-10 12:12:37,158 | INFO     | did not find any defunct processes belonging to 349108
[2025-10-10 08:13:29] 2025-10-10 12:12:37,158 | INFO     | ready for new job
[2025-10-10 08:13:29] 2025-10-10 12:12:37,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 08:13:29] 2025-10-10 12:12:37,160 | INFO     | ***************************************
[2025-10-10 08:13:29] 2025-10-10 12:12:37,160 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 08:13:29] 2025-10-10 12:12:37,160 | INFO     | ***************************************
[2025-10-10 08:13:29] 2025-10-10 12:12:37,160 | INFO     | 
[2025-10-10 08:13:29] 2025-10-10 12:12:37,177 | INFO     | architecture information:
[2025-10-10 08:13:29] 2025-10-10 12:12:37,177 | INFO     | executing command: cat /etc/os-release
[2025-10-10 08:13:29] 2025-10-10 12:12:37,195 | INFO     | cat /etc/os-release:
[2025-10-10 08:13:29] NAME="CentOS Linux"
[2025-10-10 08:13:29] VERSION="7 (Core)"
[2025-10-10 08:13:29] ID="centos"
[2025-10-10 08:13:29] ID_LIKE="rhel fedora"
[2025-10-10 08:13:29] VERSION_ID="7"
[2025-10-10 08:13:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 08:13:29] ANSI_COLOR="0;31"
[2025-10-10 08:13:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 08:13:29] HOME_URL="https://www.centos.org/"
[2025-10-10 08:13:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 08:13:29] 
[2025-10-10 08:13:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 08:13:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 08:13:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 08:13:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 08:13:29] 
[2025-10-10 08:13:29] 2025-10-10 12:12:37,195 | INFO     | ***************************************
[2025-10-10 08:13:29] 2025-10-10 12:12:37,699 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-10 08:13:29] 2025-10-10 12:12:37,718 | INFO     | sufficient remaining disk space (83858817024 B)
[2025-10-10 08:13:29] 2025-10-10 12:12:37,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 08:13:29] 2025-10-10 12:12:37,719 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 08:13:29] 2025-10-10 12:12:37,719 | INFO     | update_server=False
[2025-10-10 08:13:29] 2025-10-10 12:12:37,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 08:13:29] 2025-10-10 12:12:37,749 | INFO     | all payload control threads have been joined
[2025-10-10 08:13:29] 2025-10-10 12:12:37,840 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 08:13:29] 2025-10-10 12:12:37,841 | INFO     | aborting loop
[2025-10-10 08:13:29] 2025-10-10 12:12:37,929 | INFO     | all data control threads have been joined
[2025-10-10 08:13:29] 2025-10-10 12:12:38,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 08:13:29] 2025-10-10 12:12:38,329 | INFO     | all job control threads have been joined
[2025-10-10 08:13:29] 2025-10-10 12:12:38,724 | INFO     | [job] retrieve thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:38,755 | INFO     | [payload] control thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:38,777 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:38,804 | INFO     | [data] copytool_in thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:38,845 | INFO     | [job] job monitor thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:38,935 | INFO     | [data] control thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:39,303 | INFO     | [payload] validate_post thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:39,335 | INFO     | [job] control thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:39,718 | INFO     | [payload] failed_post thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:39,738 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:40,002 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:40,012 | INFO     | [job] validate thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:40,058 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:40,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 08:13:29] 2025-10-10 12:12:40,335 | INFO     | [data] copytool_out thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:41,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 08:13:29] 2025-10-10 12:12:41,297 | INFO     | [job] queue monitor thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:12:45,109 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 08:13:29] 2025-10-10 12:13:07,298 | INFO     | PID=342608 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 08:13:29] 2025-10-10 12:13:07,298 | INFO     | .. there are 8 such processes running
[2025-10-10 08:13:29] 2025-10-10 12:13:07,298 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 08:13:29] 2025-10-10 12:13:07,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 08:13:29] 2025-10-10 12:13:07,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 08:13:29] 2025-10-10 12:13:24,296 | INFO     | [monitor] cgroup control has ended
[2025-10-10 08:13:29] 2025-10-10 12:13:24,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140188069746496)>', '<ExcThread(monitor, started 140187556357888)>']
[2025-10-10 08:13:29] 2025-10-10 12:13:25,373 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 08:13:29] 2025-10-10 12:13:25,373 | INFO     | [monitor] control thread has ended
[2025-10-10 08:13:29] 2025-10-10 12:13:29,434 | INFO     | all workflow threads have been joined
[2025-10-10 08:13:29] 2025-10-10 12:13:29,435 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 08:13:29] 2025-10-10 12:13:29,435 | INFO     | traces error code: 0
[2025-10-10 08:13:29] 2025-10-10 12:13:29,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 08:13:29] 2025-10-10 12:13:29,577 [wrapper] ==== pilot stdout END ====
[2025-10-10 08:13:29] 2025-10-10 12:13:29,580 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 08:13:29] 2025-10-10 12:13:29,583 [wrapper] pilotpid: 342608
[2025-10-10 08:13:29] 2025-10-10 12:13:29,587 [wrapper] Pilot exit status: 0
[2025-10-10 08:13:29] 2025-10-10 12:13:29,600 [wrapper] pandaids: 6837378063
[2025-10-10 08:13:29] 2025-10-10 12:13:29,674 [wrapper] cleanup supervisor_pilot  494927 342609
[2025-10-10 08:13:29] 2025-10-10 12:13:29,677 [wrapper] Test setup, not cleaning
[2025-10-10 08:13:29] 2025-10-10 12:13:29,681 [wrapper] apfmon messages muted
[2025-10-10 08:13:29] 2025-10-10 12:13:29,684 [wrapper] ==== wrapper stdout END ====
[2025-10-10 08:13:29] 2025-10-10 12:13:29,686 [wrapper] ==== wrapper stderr END ====
[2025-10-10 08:13:29]  *** Error codes and diagnostics ***
[2025-10-10 08:13:29]     "exeErrorCode": 0,
[2025-10-10 08:13:29]     "exeErrorDiag": "",
[2025-10-10 08:13:29]     "pilotErrorCode": 0,
[2025-10-10 08:13:29]     "pilotErrorDiag": "",
[2025-10-10 08:13:29]  *** Listing of results directory ***
[2025-10-10 08:13:29] total 403984
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 21:20 pilot3.tar.gz
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 21:28 queuedata.json
[2025-10-10 08:13:29] -rwx------. 1 boincer umatlas     36292 Oct  9 21:29 runpilot2-wrapper.sh
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas       100 Oct 10 07:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 08:13:29] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 07:25 run_atlas
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas       105 Oct 10 07:25 job.xml
[2025-10-10 08:13:29] -rw-r--r--. 2 boincer umatlas 221577762 Oct 10 07:25 EVNT.46676267._001213.pool.root.1
[2025-10-10 08:13:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 07:25 start_atlas.sh
[2025-10-10 08:13:29] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 07:25 shared
[2025-10-10 08:13:29] -rw-r--r--. 2 boincer umatlas    569684 Oct 10 07:25 input.tar.gz
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas         0 Oct 10 07:25 boinc_lockfile
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 07:25 pandaJob.out
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas    975528 Oct 10 07:25 agis_schedconf.cvmfs.json
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas   1560580 Oct 10 07:25 agis_ddmendpoints.agis.ALL.json
[2025-10-10 08:13:29] drwx------. 5 boincer umatlas      4096 Oct 10 07:25 pilot3
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas 186634453 Oct 10 08:12 HITS.46676269._029722.pool.root.1
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas       529 Oct 10 08:12 boinc_task_state.xml
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas        95 Oct 10 08:12 pilot_heartbeat.json
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas      1024 Oct 10 08:12 memory_monitor_summary.json
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas    341880 Oct 10 08:12 log.46676269._029722.job.log.tgz.1
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas      7769 Oct 10 08:12 heartbeat.json
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas      6899 Oct 10 08:12 init_data.xml
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas        27 Oct 10 08:13 wrapper_checkpoint.txt
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas      4822 Oct 10 08:13 pilotlog.txt
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 08:13 boinc_mmap_file
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas    439225 Oct 10 08:13 log.46676269._029722.job.log.1
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas       357 Oct 10 08:13 output.list
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas       620 Oct 10 08:13 runtime_log
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas    798720 Oct 10 08:13 result.tar.gz
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas      8705 Oct 10 08:13 runtime_log.err
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas       651 Oct 10 08:13 97gKDme7GR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmV4OMDmOZb6dn.diag
[2025-10-10 08:13:29] -rw-r--r--. 1 boincer umatlas     21864 Oct 10 08:13 stderr.txt
[2025-10-10 08:13:29] HITS file was successfully produced:
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas 186634453 Oct 10 08:12 shared/HITS.pool.root.1
[2025-10-10 08:13:29]  *** Contents of shared directory: ***
[2025-10-10 08:13:29] total 400012
[2025-10-10 08:13:29] -rw-r--r--. 2 boincer umatlas 221577762 Oct 10 07:25 ATLAS.root_0
[2025-10-10 08:13:29] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 07:25 start_atlas.sh
[2025-10-10 08:13:29] -rw-r--r--. 2 boincer umatlas    569684 Oct 10 07:25 input.tar.gz
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas 186634453 Oct 10 08:12 HITS.pool.root.1
[2025-10-10 08:13:29] -rw-------. 1 boincer umatlas    798720 Oct 10 08:13 result.tar.gz
08:13:31 (338916): run_atlas exited; CPU time 26386.334365
08:13:31 (338916): called boinc_finish(0)

</stderr_txt>
]]>

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