Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:07:13 (24391): wrapper (7.7.26015): starting
07:07:13 (24391): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 07:07:13] Arguments: --nthreads 8
[2025-10-10 07:07:13] Threads: 8
[2025-10-10 07:07:13] Checking for CVMFS
[2025-10-10 07:07:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 07:07:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 07:07:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 07:07:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 07:07:14] 2.11.4.0 5420 49903 60164 151543 2 188 10028973 18432001 917 130560 0 42380066 99.971 2292294 38608 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 07:07:14] CVMFS is ok
[2025-10-10 07:07:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 07:07:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 07:07:14] Further information can be found at the LHC@home message board.
[2025-10-10 07:07:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 07:07:14] Checking for apptainer binary...
[2025-10-10 07:07:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 07:07:14] Running /usr/bin/apptainer --version
[2025-10-10 07:07:14] apptainer version 1.3.2-1.el7
[2025-10-10 07:07:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 07:07:15] c-206-22.aglt2.org
[2025-10-10 07:07:15] apptainer works
[2025-10-10 07:07:15] Set ATHENA_PROC_NUMBER=8
[2025-10-10 07:07:15] Set ATHENA_CORE_NUMBER=8
[2025-10-10 07:07:15] Starting ATLAS job with PandaID=6831705204
[2025-10-10 07:07:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:00:04 (24391): BOINC client no longer exists - exiting
09:00:04 (24391): timer handler: client dead, exiting
09:12:01 (14807): wrapper (7.7.26015): starting
09:12:01 (14807): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 09:12:01] Arguments: --nthreads 8
[2025-10-10 09:12:01] Threads: 8
[2025-10-10 09:12:01] This job has been restarted, cleaning up previous attempt
[2025-10-10 09:12:01] Checking for CVMFS
[2025-10-10 09:12:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 09:12:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 09:12:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 09:12:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 09:12:01] 2.11.4.0 5420 50028 60240 151546 1 39 10051790 18432000 1 130560 0 42557420 99.971 2294897 38602 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 09:12:01] CVMFS is ok
[2025-10-10 09:12:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 09:12:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 09:12:01] Further information can be found at the LHC@home message board.
[2025-10-10 09:12:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 09:12:01] Checking for apptainer binary...
[2025-10-10 09:12:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 09:12:01] Running /usr/bin/apptainer --version
[2025-10-10 09:12:01] apptainer version 1.3.2-1.el7
[2025-10-10 09:12:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 09:12:02] c-206-22.aglt2.org
[2025-10-10 09:12:02] apptainer works
[2025-10-10 09:12:02] Set ATHENA_PROC_NUMBER=8
[2025-10-10 09:12:02] Set ATHENA_CORE_NUMBER=8
[2025-10-10 09:12:02] Starting ATLAS job with PandaID=6831705204
[2025-10-10 09:12:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 12:01:37]  *** The last 200 lines of the pilot log: ***
[2025-10-10 12:01:37] 2025-10-10 16:00:35,814 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 12:01:37] 2025-10-10 16:00:35,816 | INFO     | fitting pss+swap vs Time
[2025-10-10 12:01:37] 2025-10-10 16:00:35,817 | INFO     | sum of square deviations: 1392881930.0
[2025-10-10 12:01:37] 2025-10-10 16:00:35,817 | INFO     | sum of deviations: 26643954235.0
[2025-10-10 12:01:37] 2025-10-10 16:00:35,818 | INFO     | mean x: 1760106963.0
[2025-10-10 12:01:37] 2025-10-10 16:00:35,818 | INFO     | mean y: 2461072.345454545
[2025-10-10 12:01:37] 2025-10-10 16:00:35,818 | INFO     | -- intersect: -33666013161.415936
[2025-10-10 12:01:37] 2025-10-10 16:00:35,818 | INFO     | intersect: -33666013161.415936
[2025-10-10 12:01:37] 2025-10-10 16:00:35,818 | INFO     | chi2: 1.3526104725371106
[2025-10-10 12:01:37] 2025-10-10 16:00:35,818 | INFO     | sum of square deviations: 1270051720.0
[2025-10-10 12:01:37] 2025-10-10 16:00:35,819 | INFO     | sum of deviations: 25696252836.499996
[2025-10-10 12:01:37] 2025-10-10 16:00:35,819 | INFO     | mean x: 1760106810.5
[2025-10-10 12:01:37] 2025-10-10 16:00:35,819 | INFO     | mean y: 2459895.36875
[2025-10-10 12:01:37] 2025-10-10 16:00:35,819 | INFO     | -- intersect: -35608806094.53407
[2025-10-10 12:01:37] 2025-10-10 16:00:35,820 | INFO     | intersect: -35608806094.53407
[2025-10-10 12:01:37] 2025-10-10 16:00:35,820 | INFO     | chi2: 1.3533410031832254
[2025-10-10 12:01:37] 2025-10-10 16:00:35,820 | INFO     | current chi2=1.3533410031832254 (change=-0.05400894499541007 %)
[2025-10-10 12:01:37] 2025-10-10 16:00:35,820 | INFO     | right removable region: 159
[2025-10-10 12:01:37] 2025-10-10 16:00:35,820 | INFO     | sum of square deviations: 1270051720.0
[2025-10-10 12:01:37] 2025-10-10 16:00:35,821 | INFO     | sum of deviations: 1769799801.5
[2025-10-10 12:01:37] 2025-10-10 16:00:35,821 | INFO     | mean x: 1760107115.5
[2025-10-10 12:01:37] 2025-10-10 16:00:35,821 | INFO     | mean y: 2491582.50625
[2025-10-10 12:01:37] 2025-10-10 16:00:35,821 | INFO     | -- intersect: -2450193748.789264
[2025-10-10 12:01:37] 2025-10-10 16:00:35,821 | INFO     | intersect: -2450193748.789264
[2025-10-10 12:01:37] 2025-10-10 16:00:35,822 | INFO     | chi2: 0.00412495857524653
[2025-10-10 12:01:37] 2025-10-10 16:00:35,822 | INFO     | current chi2=0.00412495857524653 (change=99.69503721440887 %)
[2025-10-10 12:01:37] 2025-10-10 16:00:35,822 | INFO     | sum of square deviations: 1154663510.0
[2025-10-10 12:01:37] 2025-10-10 16:00:35,823 | INFO     | sum of deviations: 482819697.0000002
[2025-10-10 12:01:37] 2025-10-10 16:00:35,823 | INFO     | mean x: 1760107268.0
[2025-10-10 12:01:37] 2025-10-10 16:00:35,823 | INFO     | mean y: 2493273.664516129
[2025-10-10 12:01:37] 2025-10-10 16:00:35,823 | INFO     | -- intersect: -733491236.5095848
[2025-10-10 12:01:37] 2025-10-10 16:00:35,823 | INFO     | intersect: -733491236.5095848
[2025-10-10 12:01:37] 2025-10-10 16:00:35,823 | INFO     | chi2: 0.001916444132027792
[2025-10-10 12:01:37] 2025-10-10 16:00:35,824 | INFO     | current chi2=0.001916444132027792 (change=53.54028174905356 %)
[2025-10-10 12:01:37] 2025-10-10 16:00:35,824 | INFO     | sum of square deviations: 1046484737.5
[2025-10-10 12:01:37] 2025-10-10 16:00:35,824 | INFO     | sum of deviations: 108011266.50000003
[2025-10-10 12:01:37] 2025-10-10 16:00:35,825 | INFO     | mean x: 1760107420.5
[2025-10-10 12:01:37] 2025-10-10 16:00:35,825 | INFO     | mean y: 2493798.86
[2025-10-10 12:01:37] 2025-10-10 16:00:35,825 | INFO     | -- intersect: -179172903.81778568
[2025-10-10 12:01:37] 2025-10-10 16:00:35,825 | INFO     | intersect: -179172903.81778568
[2025-10-10 12:01:37] 2025-10-10 16:00:35,825 | INFO     | chi2: 0.0017128102725459165
[2025-10-10 12:01:37] 2025-10-10 16:00:35,825 | INFO     | current chi2=0.0017128102725459165 (change=10.625608963951906 %)
[2025-10-10 12:01:37] 2025-10-10 16:00:35,825 | INFO     | left removable region: 30
[2025-10-10 12:01:37] 2025-10-10 16:00:35,826 | INFO     | sum of square deviations: 665612480.0
[2025-10-10 12:01:37] 2025-10-10 16:00:35,826 | INFO     | sum of deviations: -53005523.00000003
[2025-10-10 12:01:37] 2025-10-10 16:00:35,826 | INFO     | mean x: 1760107695.0
[2025-10-10 12:01:37] 2025-10-10 16:00:35,826 | INFO     | mean y: 2493619.310077519
[2025-10-10 12:01:37] 2025-10-10 16:00:35,826 | INFO     | -- intersect: 142658402.4430493
[2025-10-10 12:01:37] 2025-10-10 16:00:35,827 | INFO     | intersect: 142658402.4430493
[2025-10-10 12:01:37] 2025-10-10 16:00:35,827 | INFO     | chi2: 0.0016698897583052798
[2025-10-10 12:01:37] 2025-10-10 16:00:35,827 | INFO     | -- intersect: 142658402.4430493
[2025-10-10 12:01:37] 2025-10-10 16:00:35,827 | INFO     | current memory leak: -0.08 B/s (using 129 data points, chi2=0.00)
[2025-10-10 12:01:37] 2025-10-10 16:00:35,827 | INFO     | could have reported an average CPU frequency of 2358 MHz (9 samples)
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | ..............................
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | . Timing measurements:
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | . get job = 0 s
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | . initial setup = 1 s
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | . payload setup = 6 s
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | . stage-in = 0 s
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | . payload execution = 10067 s
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | . stage-out = 2 s
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | . log creation = 0 s
[2025-10-10 12:01:37] 2025-10-10 16:00:35,828 | INFO     | ..............................
[2025-10-10 12:01:37] 2025-10-10 16:00:36,235 | INFO     | 
[2025-10-10 12:01:37] 2025-10-10 16:00:36,238 | INFO     | job summary report
[2025-10-10 12:01:37] 2025-10-10 16:00:36,238 | INFO     | --------------------------------------------------
[2025-10-10 12:01:37] 2025-10-10 16:00:36,238 | INFO     | PanDA job id: 6831705204
[2025-10-10 12:01:37] 2025-10-10 16:00:36,238 | INFO     | task id: 46376905
[2025-10-10 12:01:37] 2025-10-10 16:00:36,239 | INFO     | errors: (none)
[2025-10-10 12:01:37] 2025-10-10 16:00:36,239 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 12:01:37] 2025-10-10 16:00:36,239 | INFO     | pilot state: finished 
[2025-10-10 12:01:37] 2025-10-10 16:00:36,240 | INFO     | transexitcode: 0
[2025-10-10 12:01:37] 2025-10-10 16:00:36,240 | INFO     | exeerrorcode: 0
[2025-10-10 12:01:37] 2025-10-10 16:00:36,240 | INFO     | exeerrordiag: 
[2025-10-10 12:01:37] 2025-10-10 16:00:36,240 | INFO     | exitcode: 0
[2025-10-10 12:01:37] 2025-10-10 16:00:36,241 | INFO     | exitmsg: OK
[2025-10-10 12:01:37] 2025-10-10 16:00:36,241 | INFO     | cpuconsumptiontime: 76509 s
[2025-10-10 12:01:37] 2025-10-10 16:00:36,241 | INFO     | nevents: 400
[2025-10-10 12:01:37] 2025-10-10 16:00:36,241 | INFO     | neventsw: 0
[2025-10-10 12:01:37] 2025-10-10 16:00:36,242 | INFO     | pid: 12808
[2025-10-10 12:01:37] 2025-10-10 16:00:36,242 | INFO     | pgrp: 12808
[2025-10-10 12:01:37] 2025-10-10 16:00:36,242 | INFO     | corecount: 8
[2025-10-10 12:01:37] 2025-10-10 16:00:36,243 | INFO     | event service: False
[2025-10-10 12:01:37] 2025-10-10 16:00:36,243 | INFO     | sizes: {0: 2348816, 4: 2349078, 11: 2349106, 10077: 2377755, 10081: 2386753, 10082: 2386809, 10086: 2387195}
[2025-10-10 12:01:37] 2025-10-10 16:00:36,243 | INFO     | --------------------------------------------------
[2025-10-10 12:01:37] 2025-10-10 16:00:36,243 | INFO     | 
[2025-10-10 12:01:37] 2025-10-10 16:00:36,244 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 12:01:37] 2025-10-10 16:00:36,274 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,274 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,275 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,275 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,275 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,275 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,276 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,276 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,276 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,276 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,276 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,277 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,277 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,277 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,277 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,277 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 12:01:37] 2025-10-10 16:00:36,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,278 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 12:01:37] 2025-10-10 16:00:36,278 | INFO     | job 6831705204 has completed (purged errors)
[2025-10-10 12:01:37] 2025-10-10 16:00:36,278 | INFO     | overall cleanup function is called
[2025-10-10 12:01:37] 2025-10-10 16:00:36,424 | INFO     | PID=25930 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 12:01:37] 2025-10-10 16:00:36,424 | INFO     | .. there are 3 such processes running
[2025-10-10 12:01:37] 2025-10-10 16:00:37,290 | INFO     | --- collectZombieJob: --- 10, [12808]
[2025-10-10 12:01:37] 2025-10-10 16:00:37,290 | INFO     | zombie collector waiting for pid 12808
[2025-10-10 12:01:37] 2025-10-10 16:00:37,290 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 12:01:37] 2025-10-10 16:00:37,290 | INFO     | collected zombie processes
[2025-10-10 12:01:37] 2025-10-10 16:00:37,290 | INFO     | will attempt to kill all subprocesses of pid=12808
[2025-10-10 12:01:37] 2025-10-10 16:00:37,431 | INFO     | process IDs to be killed: [12808] (in reverse order)
[2025-10-10 12:01:37] 2025-10-10 16:00:37,512 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 12:01:37] 2025-10-10 16:00:37,512 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 12:01:37] 2025-10-10 16:00:37,517 | INFO     | did not find any defunct processes belonging to 12808
[2025-10-10 12:01:37] 2025-10-10 16:00:37,522 | INFO     | did not find any defunct processes belonging to 12808
[2025-10-10 12:01:37] 2025-10-10 16:00:37,523 | INFO     | ready for new job
[2025-10-10 12:01:37] 2025-10-10 16:00:37,523 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 12:01:37] 2025-10-10 16:00:37,525 | INFO     | ***************************************
[2025-10-10 12:01:37] 2025-10-10 16:00:37,525 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-10 12:01:37] 2025-10-10 16:00:37,525 | INFO     | ***************************************
[2025-10-10 12:01:37] 2025-10-10 16:00:37,525 | INFO     | 
[2025-10-10 12:01:37] 2025-10-10 16:00:37,527 | INFO     | architecture information:
[2025-10-10 12:01:37] 2025-10-10 16:00:37,527 | INFO     | executing command: cat /etc/os-release
[2025-10-10 12:01:37] 2025-10-10 16:00:37,540 | INFO     | cat /etc/os-release:
[2025-10-10 12:01:37] NAME="CentOS Linux"
[2025-10-10 12:01:37] VERSION="7 (Core)"
[2025-10-10 12:01:37] ID="centos"
[2025-10-10 12:01:37] ID_LIKE="rhel fedora"
[2025-10-10 12:01:37] VERSION_ID="7"
[2025-10-10 12:01:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 12:01:37] ANSI_COLOR="0;31"
[2025-10-10 12:01:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 12:01:37] HOME_URL="https://www.centos.org/"
[2025-10-10 12:01:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 12:01:37] 
[2025-10-10 12:01:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 12:01:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 12:01:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 12:01:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 12:01:37] 
[2025-10-10 12:01:37] 2025-10-10 16:00:37,540 | INFO     | ***************************************
[2025-10-10 12:01:37] 2025-10-10 16:00:38,043 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 12:01:37] 2025-10-10 16:00:38,075 | INFO     | sufficient remaining disk space (28250734592 B)
[2025-10-10 12:01:37] 2025-10-10 16:00:38,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 12:01:37] 2025-10-10 16:00:38,076 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 12:01:37] 2025-10-10 16:00:38,076 | INFO     | update_server=False
[2025-10-10 12:01:37] 2025-10-10 16:00:38,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 12:01:37] 2025-10-10 16:00:38,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 12:01:37] 2025-10-10 16:00:38,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:01:37] 2025-10-10 16:00:38,077 | INFO     | aborting loop
[2025-10-10 12:01:37] 2025-10-10 16:00:38,268 | INFO     | all payload control threads have been joined
[2025-10-10 12:01:37] 2025-10-10 16:00:38,515 | INFO     | all job control threads have been joined
[2025-10-10 12:01:37] 2025-10-10 16:00:38,669 | INFO     | all data control threads have been joined
[2025-10-10 12:01:37] 2025-10-10 16:00:38,857 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 12:01:37] 2025-10-10 16:00:39,082 | INFO     | [job] retrieve thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,083 | INFO     | [job] job monitor thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,260 | INFO     | [payload] validate_post thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,273 | INFO     | [payload] control thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,491 | INFO     | [payload] failed_post thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,520 | INFO     | [job] control thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,674 | INFO     | [data] control thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,779 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,788 | INFO     | [data] copytool_in thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,812 | INFO     | [job] validate thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,812 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:39,898 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:40,863 | INFO     | [data] copytool_out thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:40,934 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 12:01:37] 2025-10-10 16:00:41,939 | INFO     | [job] queue monitor thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:00:42,082 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 12:01:37] 2025-10-10 16:01:08,638 | INFO     | PID=25930 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 12:01:37] 2025-10-10 16:01:08,638 | INFO     | .. there are 3 such processes running
[2025-10-10 12:01:37] 2025-10-10 16:01:08,639 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 12:01:37] 2025-10-10 16:01:08,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 12:01:37] 2025-10-10 16:01:08,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 12:01:37] 2025-10-10 16:01:30,805 | INFO     | [monitor] cgroup control has ended
[2025-10-10 12:01:37] 2025-10-10 16:01:32,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140501805700928)>', '<ExcThread(monitor, started 140500837320448)>']
[2025-10-10 12:01:37] 2025-10-10 16:01:32,765 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 12:01:37] 2025-10-10 16:01:32,765 | INFO     | [monitor] control thread has ended
[2025-10-10 12:01:37] 2025-10-10 16:01:37,279 | INFO     | all workflow threads have been joined
[2025-10-10 12:01:37] 2025-10-10 16:01:37,279 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 12:01:37] 2025-10-10 16:01:37,280 | INFO     | traces error code: 0
[2025-10-10 12:01:37] 2025-10-10 16:01:37,280 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 12:01:37] 2025-10-10 16:01:37,411 [wrapper] ==== pilot stdout END ====
[2025-10-10 12:01:37] 2025-10-10 16:01:37,414 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 12:01:37] 2025-10-10 16:01:37,416 [wrapper] pilotpid: 25930
[2025-10-10 12:01:37] 2025-10-10 16:01:37,418 [wrapper] Pilot exit status: 0
[2025-10-10 12:01:37] 2025-10-10 16:01:37,428 [wrapper] pandaids: 6831705204 6831705204
[2025-10-10 12:01:37] 2025-10-10 16:01:37,456 [wrapper] cleanup supervisor_pilot 26815 25932
[2025-10-10 12:01:37] 2025-10-10 16:01:37,458 [wrapper] Test setup, not cleaning
[2025-10-10 12:01:37] 2025-10-10 16:01:37,460 [wrapper] apfmon messages muted
[2025-10-10 12:01:37] 2025-10-10 16:01:37,461 [wrapper] ==== wrapper stdout END ====
[2025-10-10 12:01:37] 2025-10-10 16:01:37,463 [wrapper] ==== wrapper stderr END ====
[2025-10-10 12:01:37]  *** Error codes and diagnostics ***
[2025-10-10 12:01:37]     "exeErrorCode": 0,
[2025-10-10 12:01:37]     "exeErrorDiag": "",
[2025-10-10 12:01:37]     "pilotErrorCode": 0,
[2025-10-10 12:01:37]     "pilotErrorDiag": "",
[2025-10-10 12:01:37]  *** Listing of results directory ***
[2025-10-10 12:01:37] total 607476
[2025-10-10 12:01:37] drwx------ 4 boincer umatlas      4096 Jul 31 09:00 pilot3
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas    552446 Oct  5 10:21 pilot3.tar.gz
[2025-10-10 12:01:37] -rwx------ 1 boincer umatlas     36292 Oct  5 10:26 runpilot2-wrapper.sh
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas      5112 Oct  5 10:26 queuedata.json
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas       100 Oct 10 07:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 12:01:37] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 07:07 run_atlas
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas       105 Oct 10 07:07 job.xml
[2025-10-10 12:01:37] -rw-r--r-- 3 boincer umatlas 216554404 Oct 10 07:07 EVNT.46376901._003192.pool.root.1
[2025-10-10 12:01:37] -rw-r--r-- 3 boincer umatlas 216554404 Oct 10 07:07 ATLAS.root_0
[2025-10-10 12:01:37] -rw-r--r-- 2 boincer umatlas    565596 Oct 10 07:07 input.tar.gz
[2025-10-10 12:01:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 07:07 start_atlas.sh
[2025-10-10 12:01:37] drwxrwx--x 2 boincer umatlas      4096 Oct 10 07:07 shared
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas         0 Oct 10 07:07 boinc_lockfile
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas      2519 Oct 10 09:12 pandaJob.out
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas    975525 Oct 10 09:12 agis_schedconf.cvmfs.json
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas      5952 Oct 10 11:56 init_data.xml
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas 181424228 Oct 10 11:59 HITS.46376905._086901.pool.root.1
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas       531 Oct 10 12:00 boinc_task_state.xml
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas      1050 Oct 10 12:00 memory_monitor_summary.json
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas   1560580 Oct 10 12:00 agis_ddmendpoints.agis.ALL.json
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas    403401 Oct 10 12:00 log.46376905._086901.job.log.tgz.1
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas      7858 Oct 10 12:00 heartbeat.json
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas        96 Oct 10 12:01 pilot_heartbeat.json
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 12:01 boinc_mmap_file
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas        29 Oct 10 12:01 wrapper_checkpoint.txt
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas      4821 Oct 10 12:01 pilotlog.txt
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas   1411929 Oct 10 12:01 log.46376905._086901.job.log.1
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas       357 Oct 10 12:01 output.list
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas       620 Oct 10 12:01 runtime_log
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas   1832960 Oct 10 12:01 result.tar.gz
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas      8789 Oct 10 12:01 runtime_log.err
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas       786 Oct 10 12:01 dpyKDmjreP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdfPNDmb3IWbm.diag
[2025-10-10 12:01:37] -rw-r--r-- 1 boincer umatlas     23243 Oct 10 12:01 stderr.txt
[2025-10-10 12:01:37] HITS file was successfully produced:
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas 181424228 Oct 10 11:59 shared/HITS.pool.root.1
[2025-10-10 12:01:37]  *** Contents of shared directory: ***
[2025-10-10 12:01:37] total 391024
[2025-10-10 12:01:37] -rw-r--r-- 3 boincer umatlas 216554404 Oct 10 07:07 ATLAS.root_0
[2025-10-10 12:01:37] -rw-r--r-- 2 boincer umatlas    565596 Oct 10 07:07 input.tar.gz
[2025-10-10 12:01:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 07:07 start_atlas.sh
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas 181424228 Oct 10 11:59 HITS.pool.root.1
[2025-10-10 12:01:37] -rw------- 1 boincer umatlas   1832960 Oct 10 12:01 result.tar.gz
12:01:38 (14807): run_atlas exited; CPU time 76642.183132
12:01:38 (14807): called boinc_finish(0)

</stderr_txt>
]]>

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