Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:30:22 (3524073): wrapper (7.7.26015): starting
13:30:22 (3524073): wrapper: running run_atlas (--nthreads 2)
[2025-10-10 13:30:22] Arguments: --nthreads 2
[2025-10-10 13:30:22] Threads: 2
[2025-10-10 13:30:22] Checking for CVMFS
[2025-10-10 13:30:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 13:30:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 13:30:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 13:30:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 13:30:23] 2.11.0.0 3088652 110 45564 151543 2 186 4125761 4194304 0 130560 0 1366595 99.999 5462 1129 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 13:30:23] CVMFS is ok
[2025-10-10 13:30:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 13:30:23] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 13:30:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 13:30:23] Further information can be found at the LHC@home message board.
[2025-10-10 13:30:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 13:30:23] Checking for apptainer binary...
[2025-10-10 13:30:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 13:30:23] Running /usr/bin/apptainer --version
[2025-10-10 13:30:24] apptainer version 1.2.2-1.el8
[2025-10-10 13:30:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 13:30:24] bottom
[2025-10-10 13:30:24] apptainer works
[2025-10-10 13:30:24] Set ATHENA_PROC_NUMBER=2
[2025-10-10 13:30:24] Set ATHENA_CORE_NUMBER=2
[2025-10-10 13:30:24] Starting ATLAS job with PandaID=6837378929
[2025-10-10 13:30:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 13:37:01]  *** The last 200 lines of the pilot log: ***
[2025-10-10 13:37:01] 2025-10-10 11:36:26,825 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6837378929/memory_monitor_output.txt
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | INFO     | memory summary dictionary not yet available
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | could have reported an average CPU frequency of 1890 MHz (4 samples)
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | ..............................
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | . Timing measurements:
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | . get job = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . initial setup = 3 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . payload setup = 8 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . stage-in = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . payload execution = 131 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . stage-out = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . log creation = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | ..............................
[2025-10-10 13:37:01] 2025-10-10 11:36:26,830 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 13:37:01] 2025-10-10 11:36:26,830 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6837378929/pilotlog.txt
[2025-10-10 13:37:01] 2025-10-10 11:36:26,847 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 13:37:01] - Log from pilotlog.txt -
[2025-10-10 13:37:01] 2025-10-10 11:36:25,618 | INFO     | time since job start (344s) is within the limit (172800.0s)
[2025-10-10 13:37:01] 2025-10-10 11:36:26,824 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-10 13:37:01] 2025-10-10 11:36:26,825 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6837378929/memory_monitor_output.txt
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | INFO     | memory summary dictionary not yet available
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | could have reported an average CPU frequency of 1890 MHz (4 samples)
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | ..............................
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | . Timing measurements:
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | . get job = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . initial setup = 3 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . payload setup = 8 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . stage-in = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . payload execution = 131 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . stage-out = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . log creation = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | ..............................
[2025-10-10 13:37:01] 2025-10-10 11:36:26,830 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 13:37:01] 2025-10-10 11:36:26,830 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6837378929/pilotlog.txt
[2025-10-10 13:37:01] 2025-10-10 11:36:26,848 | WARNING  | 
[2025-10-10 13:37:01] [begin log extracts]
[2025-10-10 13:37:01] - Log from pilotlog.txt -
[2025-10-10 13:37:01] 2025-10-10 11:36:25,618 | INFO     | time since job start (344s) is within the limit (172800.0s)
[2025-10-10 13:37:01] 2025-10-10 11:36:26,824 | INFO     | CPU arch script returned: x86-64-v1
[2025-10-10 13:37:01] 2025-10-10 11:36:26,825 | INFO     | found 2 cores (2 cores per socket, 1 socket) , CPU MHz: 1997.2675
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | WARNING  | file does not exist either: /var/lib/boinc/slots/2/PanDA_Pilot-6837378929/memory_monitor_output.txt
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | INFO     | memory summary dictionary not yet available
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 13:37:01] 2025-10-10 11:36:26,827 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | could have reported an average CPU frequency of 1890 MHz (4 samples)
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | ..............................
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | . Timing measurements:
[2025-10-10 13:37:01] 2025-10-10 11:36:26,828 | INFO     | . get job = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . initial setup = 3 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . payload setup = 8 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . stage-in = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . payload execution = 131 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . stage-out = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | . log creation = 0 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,829 | INFO     | ..............................
[2025-10-10 13:37:01] 2025-10-10 11:36:26,830 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 13:37:01] 2025-10-10 11:36:26,830 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/2/PanDA_Pilot-6837378929/pilotlog.txt
[2025-10-10 13:37:01] [end log extracts]
[2025-10-10 13:37:01] 2025-10-10 11:36:26,848 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 13:37:01] 2025-10-10 11:36:26,849 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-10 13:37:01] 2025-10-10 11:36:26,969 | INFO     | 
[2025-10-10 13:37:01] 2025-10-10 11:36:26,969 | INFO     | job summary report
[2025-10-10 13:37:01] 2025-10-10 11:36:26,969 | INFO     | --------------------------------------------------
[2025-10-10 13:37:01] 2025-10-10 11:36:26,969 | INFO     | PanDA job id: 6837378929
[2025-10-10 13:37:01] 2025-10-10 11:36:26,969 | INFO     | task id: 46676269
[2025-10-10 13:37:01] 2025-10-10 11:36:26,969 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 13:33:15,231 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 13:37:01] 2025-10-10 11:36:26,970 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 13:37:01] 2025-10-10 11:36:26,970 | INFO     | pilot state: failed 
[2025-10-10 13:37:01] 2025-10-10 11:36:26,970 | INFO     | transexitcode: 65
[2025-10-10 13:37:01] 2025-10-10 11:36:26,970 | INFO     | exeerrorcode: 65
[2025-10-10 13:37:01] 2025-10-10 11:36:26,970 | INFO     | exeerrordiag: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-10 13:37:01] 2025-10-10 11:36:26,970 | INFO     | exitcode: 65
[2025-10-10 13:37:01] 2025-10-10 11:36:26,970 | INFO     | exitmsg: EVNTtoHITS got a SIGILL signal (exit code 132)
[2025-10-10 13:37:01] 2025-10-10 11:36:26,971 | INFO     | cpuconsumptiontime: 155 s
[2025-10-10 13:37:01] 2025-10-10 11:36:26,971 | INFO     | nevents: 0
[2025-10-10 13:37:01] 2025-10-10 11:36:26,971 | INFO     | neventsw: 0
[2025-10-10 13:37:01] 2025-10-10 11:36:26,971 | INFO     | pid: 3534190
[2025-10-10 13:37:01] 2025-10-10 11:36:26,971 | INFO     | pgrp: 3534190
[2025-10-10 13:37:01] 2025-10-10 11:36:26,971 | INFO     | corecount: 2
[2025-10-10 13:37:01] 2025-10-10 11:36:26,971 | INFO     | event service: False
[2025-10-10 13:37:01] 2025-10-10 11:36:26,972 | INFO     | sizes: {0: 2348635, 1: 2348834, 8: 2349096, 12: 2349124, 203: 2372445, 204: 2376740, 205: 2376896, 327: 2377062}
[2025-10-10 13:37:01] 2025-10-10 11:36:26,972 | INFO     | --------------------------------------------------
[2025-10-10 13:37:01] 2025-10-10 11:36:26,972 | INFO     | 
[2025-10-10 13:37:01] 2025-10-10 11:36:26,972 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-10 13:37:01] 2025-10-10 11:36:26,998 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:26,998 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:26,999 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:26,999 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:26,999 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:26,999 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:26,999 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:26,999 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:26,999 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,000 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,000 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,000 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,000 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,000 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,000 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,000 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,001 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,001 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 13:37:01] 2025-10-10 11:36:27,001 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,001 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 13:37:01] 2025-10-10 11:36:27,001 | INFO     | job 6837378929 has completed (purged errors)
[2025-10-10 13:37:01] 2025-10-10 11:36:27,001 | INFO     | overall cleanup function is called
[2025-10-10 13:37:01] 2025-10-10 11:36:28,008 | INFO     | --- collectZombieJob: --- 10, [3534190]
[2025-10-10 13:37:01] 2025-10-10 11:36:28,009 | INFO     | zombie collector waiting for pid 3534190
[2025-10-10 13:37:01] 2025-10-10 11:36:28,009 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 13:37:01] 2025-10-10 11:36:28,009 | INFO     | collected zombie processes
[2025-10-10 13:37:01] 2025-10-10 11:36:28,009 | INFO     | will attempt to kill all subprocesses of pid=3534190
[2025-10-10 13:37:01] 2025-10-10 11:36:28,084 | INFO     | process IDs to be killed: [3534190] (in reverse order)
[2025-10-10 13:37:01] 2025-10-10 11:36:28,129 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 13:37:01] 2025-10-10 11:36:28,129 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 13:37:01] 2025-10-10 11:36:28,133 | INFO     | did not find any defunct processes belonging to 3534190
[2025-10-10 13:37:01] 2025-10-10 11:36:28,136 | INFO     | did not find any defunct processes belonging to 3534190
[2025-10-10 13:37:01] 2025-10-10 11:36:28,136 | INFO     | ready for new job
[2025-10-10 13:37:01] 2025-10-10 11:36:28,137 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 13:37:01] 2025-10-10 11:36:28,138 | INFO     | ***************************************
[2025-10-10 13:37:01] 2025-10-10 11:36:28,138 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 13:37:01] 2025-10-10 11:36:28,138 | INFO     | ***************************************
[2025-10-10 13:37:01] 2025-10-10 11:36:28,139 | INFO     | 
[2025-10-10 13:37:01] 2025-10-10 11:36:28,151 | INFO     | architecture information:
[2025-10-10 13:37:01] 2025-10-10 11:36:28,151 | INFO     | executing command: cat /etc/os-release
[2025-10-10 13:37:01] 2025-10-10 11:36:28,170 | INFO     | cat /etc/os-release:
[2025-10-10 13:37:01] NAME="CentOS Linux"
[2025-10-10 13:37:01] VERSION="7 (Core)"
[2025-10-10 13:37:01] ID="centos"
[2025-10-10 13:37:01] ID_LIKE="rhel fedora"
[2025-10-10 13:37:01] VERSION_ID="7"
[2025-10-10 13:37:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 13:37:01] ANSI_COLOR="0;31"
[2025-10-10 13:37:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 13:37:01] HOME_URL="https://www.centos.org/"
[2025-10-10 13:37:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 13:37:01] 
[2025-10-10 13:37:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 13:37:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 13:37:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 13:37:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 13:37:01] 
[2025-10-10 13:37:01] 2025-10-10 11:36:28,170 | INFO     | ***************************************
[2025-10-10 13:37:01] 2025-10-10 11:36:28,673 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-10 13:37:01] 2025-10-10 11:36:28,693 | INFO     | sufficient remaining disk space (212182499328 B)
[2025-10-10 13:37:01] 2025-10-10 11:36:28,693 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 13:37:01] 2025-10-10 11:36:28,693 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 13:37:01] 2025-10-10 11:36:28,694 | INFO     | update_server=False
[2025-10-10 13:37:01] 2025-10-10 11:36:28,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 13:37:01] 2025-10-10 11:36:28,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:37:01] 2025-10-10 11:36:28,736 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:37:01] 2025-10-10 11:36:28,736 | INFO     | aborting loop
[2025-10-10 13:37:01] 2025-10-10 11:36:28,821 | INFO     | all payload control threads have been joined
[2025-10-10 13:37:01] 2025-10-10 11:36:28,902 | INFO     | all data control threads have been joined
[2025-10-10 13:37:01] 2025-10-10 11:36:28,923 | INFO     | all job control threads have been joined
[2025-10-10 13:37:01] 2025-10-10 11:36:29,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 13:37:01] 2025-10-10 11:36:29,699 | INFO     | [job] retrieve thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:29,700 | INFO     | [job] queue monitor thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:29,741 | INFO     | [job] job monitor thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:29,827 | INFO     | [payload] control thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:29,907 | INFO     | [data] control thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:29,928 | INFO     | [job] control thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:30,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:30,141 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:30,220 | INFO     | [payload] validate_post thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:30,301 | INFO     | [data] copytool_in thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:30,409 | INFO     | [job] validate thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:30,706 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:30,820 | INFO     | [payload] failed_post thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:30,968 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:31,419 | INFO     | [data] copytool_out thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:31,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 13:37:01] 2025-10-10 11:36:35,957 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 13:37:01] 2025-10-10 11:36:41,548 | INFO     | [monitor] cgroup control has ended
[2025-10-10 13:37:01] 2025-10-10 11:36:42,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139656955811648)>', '<ExcThread(monitor, started 139656213550848)>']
[2025-10-10 13:37:01] 2025-10-10 11:36:47,640 | INFO     | all workflow threads have been joined
[2025-10-10 13:37:01] 2025-10-10 11:36:47,669 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 13:37:01] 2025-10-10 11:36:47,669 | INFO     | traces error code: 0
[2025-10-10 13:37:01] 2025-10-10 11:36:47,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 13:37:01] 2025-10-10 11:36:59,952 | INFO     | PID=3527694 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 13:37:01] 2025-10-10 11:36:59,954 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 13:37:01] 2025-10-10 11:36:59,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 13:37:01] 2025-10-10 11:36:59,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 13:37:01] 2025-10-10 11:36:59,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 13:37:01] 2025-10-10 11:36:59,954 | INFO     | [monitor] control thread has ended
[2025-10-10 13:37:01] 2025-10-10 11:37:01,371 [wrapper] ==== pilot stdout END ====
[2025-10-10 13:37:01] 2025-10-10 11:37:01,376 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 13:37:01] 2025-10-10 11:37:01,380 [wrapper] pilotpid: 3527694
[2025-10-10 13:37:01] 2025-10-10 11:37:01,384 [wrapper] Pilot exit status: 0
[2025-10-10 13:37:01] 2025-10-10 11:37:01,469 [wrapper] pandaids: 6837378929
[2025-10-10 13:37:01] 2025-10-10 11:37:01,615 [wrapper] cleanup supervisor_pilot 3527700 3527695
[2025-10-10 13:37:01] 2025-10-10 11:37:01,620 [wrapper] Test setup, not cleaning
[2025-10-10 13:37:01] 2025-10-10 11:37:01,624 [wrapper] apfmon messages muted
[2025-10-10 13:37:01] 2025-10-10 11:37:01,627 [wrapper] ==== wrapper stdout END ====
[2025-10-10 13:37:01] 2025-10-10 11:37:01,631 [wrapper] ==== wrapper stderr END ====
[2025-10-10 13:37:01]  *** Error codes and diagnostics ***
[2025-10-10 13:37:01]     "exeErrorCode": 65,
[2025-10-10 13:37:01]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-10 13:37:01]     "pilotErrorCode": 1305,
[2025-10-10 13:37:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
[2025-10-10 13:37:01]  *** Listing of results directory ***
[2025-10-10 13:37:01] total 216736
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc    557409 Oct 10 03:33 pilot3.tar.gz
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc      5112 Oct 10 03:48 queuedata.json
[2025-10-10 13:37:01] -rwx------ 1 boinc boinc     36292 Oct 10 03:49 runpilot2-wrapper.sh
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc       100 Oct 10 13:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 13:37:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 13:30 run_atlas
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc       105 Oct 10 13:30 job.xml
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc      5984 Oct 10 13:30 init_data.xml
[2025-10-10 13:37:01] -rw-r--r-- 2 boinc boinc 217704878 Oct 10 13:30 EVNT.46676267._001227.pool.root.1
[2025-10-10 13:37:01] -rw-r--r-- 2 boinc boinc    569683 Oct 10 13:30 input.tar.gz
[2025-10-10 13:37:01] drwxrwx--x 2 boinc boinc        68 Oct 10 13:30 shared
[2025-10-10 13:37:01] -rw-r--r-- 2 boinc boinc     15120 Oct 10 13:30 start_atlas.sh
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc         0 Oct 10 13:30 boinc_lockfile
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc      2549 Oct 10 13:30 pandaJob.out
[2025-10-10 13:37:01] -rw------- 1 boinc boinc    975528 Oct 10 13:30 agis_schedconf.cvmfs.json
[2025-10-10 13:37:01] -rw------- 1 boinc boinc   1560580 Oct 10 13:30 agis_ddmendpoints.agis.ALL.json
[2025-10-10 13:37:01] drwx------ 5 boinc boinc      4096 Oct 10 13:30 pilot3
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc       524 Oct 10 13:33 boinc_task_state.xml
[2025-10-10 13:37:01] -rw------- 1 boinc boinc     45862 Oct 10 13:34 log.46676269._030068.job.log.tgz.1
[2025-10-10 13:37:01] -rw------- 1 boinc boinc      8055 Oct 10 13:36 heartbeat.json
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc        23 Oct 10 13:36 wrapper_checkpoint.txt
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc      8192 Oct 10 13:36 boinc_mmap_file
[2025-10-10 13:37:01] -rw------- 1 boinc boinc        95 Oct 10 13:36 pilot_heartbeat.json
[2025-10-10 13:37:01] -rw------- 1 boinc boinc       747 Oct 10 13:36 pilotlog.txt
[2025-10-10 13:37:01] -rw------- 1 boinc boinc    128150 Oct 10 13:37 log.46676269._030068.job.log.1
[2025-10-10 13:37:01] -rw------- 1 boinc boinc       188 Oct 10 13:37 output.list
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc       620 Oct 10 13:37 runtime_log
[2025-10-10 13:37:01] -rw------- 1 boinc boinc    194560 Oct 10 13:37 result.tar.gz
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc      8505 Oct 10 13:37 runtime_log.err
[2025-10-10 13:37:01] -rw------- 1 boinc boinc       637 Oct 10 13:37 09MMDmvQHR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmz6OMDm0Rz0Zn.diag
[2025-10-10 13:37:01] -rw-r--r-- 1 boinc boinc     21901 Oct 10 13:37 stderr.txt
[2025-10-10 13:37:01] No HITS result produced
[2025-10-10 13:37:01]  *** Contents of shared directory: ***
[2025-10-10 13:37:01] total 213372
[2025-10-10 13:37:01] -rw-r--r-- 2 boinc boinc 217704878 Oct 10 13:30 ATLAS.root_0
[2025-10-10 13:37:01] -rw-r--r-- 2 boinc boinc    569683 Oct 10 13:30 input.tar.gz
[2025-10-10 13:37:01] -rw-r--r-- 2 boinc boinc     15120 Oct 10 13:30 start_atlas.sh
[2025-10-10 13:37:01] -rw------- 1 boinc boinc    194560 Oct 10 13:37 result.tar.gz
13:37:03 (3524073): run_atlas exited; CPU time 134.665399
13:37:03 (3524073): called boinc_finish(0)

</stderr_txt>
]]>

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