Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 17:08:10 (13320): vboxwrapper version 26210
2025-10-10 17:08:10 (13320): BOINC client version: 8.2.4
2025-10-10 17:08:11 (13320): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-10-10 17:08:11 (13320): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 17:08:11 (13320): Create VM. (boinc_e260f598dd8e31a4, slot#2)
2025-10-10 17:08:12 (13320): Setting Memory Size for VM. (4800MB)
2025-10-10 17:08:12 (13320): Setting CPU Count for VM. (8)
2025-10-10 17:08:12 (13320): Setting Chipset Options for VM.
2025-10-10 17:08:13 (13320): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 17:08:13 (13320): Setting Boot Options for VM.
2025-10-10 17:08:13 (13320): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 17:08:14 (13320): Enabling VM Network Access.
2025-10-10 17:08:14 (13320): Disabling USB Support for VM.
2025-10-10 17:08:14 (13320): Disabling COM Port Support for VM.
2025-10-10 17:08:14 (13320): Disabling LPT Port Support for VM.
2025-10-10 17:08:15 (13320): Disabling Audio Support for VM.
2025-10-10 17:08:15 (13320): Disabling Clipboard Support for VM.
2025-10-10 17:08:15 (13320): Disabling Drag and Drop Support for VM.
2025-10-10 17:08:15 (13320): Adding storage controller(s) to VM.
2025-10-10 17:08:16 (13320): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 17:08:16 (13320): Adding VirtualBox Guest Additions to VM.
2025-10-10 17:08:16 (13320): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 17:08:17 (13320): forwarding host port 62323 to guest port 80
2025-10-10 17:08:17 (13320): Enabling remote desktop for VM.
2025-10-10 17:08:17 (13320): Required extension pack not installed, remote desktop not enabled.
2025-10-10 17:08:17 (13320): Enabling shared directory for VM.
2025-10-10 17:08:18 (13320): Starting VM using VBoxManage interface. (boinc_e260f598dd8e31a4, slot#2)
2025-10-10 17:08:24 (13320): Successfully started VM. (PID = '3800')
2025-10-10 17:08:24 (13320): Reporting VM Process ID to BOINC.
2025-10-10 17:08:24 (13320): Guest Log: BIOS: VirtualBox 7.1.10
2025-10-10 17:08:24 (13320): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 17:08:24 (13320): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 17:08:24 (13320): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 17:08:24 (13320): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 17:08:24 (13320): Detected: Web Application Enabled (http://localhost:62323)
2025-10-10 17:08:24 (13320): Preference change detected
2025-10-10 17:08:24 (13320): Setting CPU throttle for VM. (100%)
2025-10-10 17:08:24 (13320): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 17:08:26 (13320): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 17:08:26 (13320): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 17:08:29 (13320): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 17:08:29 (13320): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 17:08:29 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 17:08:36 (13320): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 17:08:36 (13320): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-10 17:08:41 (13320): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 17:08:41 (13320): Guest Log: 00:00:00.000159 main     Log opened 2025-10-10T17:08:39.352937000Z
2025-10-10 17:08:41 (13320): Guest Log: 00:00:00.000287 main     OS Product: Linux
2025-10-10 17:08:41 (13320): Guest Log: 00:00:00.000331 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 17:08:41 (13320): Guest Log: 00:00:00.000369 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 17:08:41 (13320): Guest Log: 00:00:00.000407 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 17:08:41 (13320): Guest Log: 00:00:00.000408 main     Process ID: 1381
2025-10-10 17:08:41 (13320): Guest Log: 00:00:00.000408 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 17:08:41 (13320): Guest Log: 00:00:00.001251 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 17:08:41 (13320): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 17:08:41 (13320): Guest Log: [INFO] Mounting shared directory
2025-10-10 17:08:41 (13320): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 17:08:46 (13320): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 17:08:46 (13320): Guest Log: [INFO] Detected branch: prod
2025-10-10 17:08:46 (13320): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 17:08:46 (13320): Guest Log: Copying input files
2025-10-10 17:08:47 (13320): Guest Log: Copied input files into RunAtlas.
2025-10-10 17:08:47 (13320): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 17:08:47 (13320): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 17:08:47 (13320): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 17:08:47 (13320): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 17:08:51 (13320): Guest Log: 00:00:10.005935 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 299 894 000ns (GuestNow=1 760 108 931 055 380 000 ns GuestLast=1 760 116 119 355 274 000 ns fSetTimeLastLoop=true )
2025-10-10 17:08:55 (13320): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 17:08:55 (13320): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 17:08:55 (13320): Guest Log: 2.6.3.0 1659 0 30188 151550 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 17:08:56 (13320): Guest Log: copied the webapp to /var/www
2025-10-10 17:08:56 (13320): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-10 17:08:56 (13320): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-10 17:08:56 (13320): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 17:08:56 (13320): Guest Log:  *** Starting ATLAS job. (PandaID=6837399407 taskID=46676269) ***
2025-10-10 17:39:55 (13320): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 20:30:59 (13320): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 20:31:06 (13320): Guest Log: 00:31:20.567430 timesync vgsvcTimeSyncWorker: Radical host time change: 10 274 488 000 000ns (HostNow=1 760 121 066 104 000 000 ns HostLast=1 760 110 791 616 000 000 ns)
2025-10-10 20:31:16 (13320): Guest Log: 00:31:30.572895 timesync vgsvcTimeSyncWorker: Radical guest time change: 10 274 493 212 000ns (GuestNow=1 760 121 076 109 656 000 ns GuestLast=1 760 110 801 616 444 000 ns fSetTimeLastLoop=true )
2025-10-10 21:39:35 (13320): Status Report: Elapsed Time: '6000.000000'
2025-10-10 21:39:35 (13320): Status Report: CPU Time: '41952.828125'
2025-10-10 22:07:38 (13320): Guest Log:  *** Job finished ***
2025-10-10 22:07:38 (13320): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:15,742 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:15,742 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:29,752 | INFO     | [monitor] cgroup control has ended
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:29,905 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139864022058816)>', '<ExcThread(monitor, started 139863571547904)>']
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:29,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:29,927 | INFO     | [monitor] control thread has ended
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:34,973 | INFO     | all workflow threads have been joined
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:34,973 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:34,973 | INFO     | traces error code: 0
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:34,973 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,052 [wrapper] ==== pilot stdout END ====
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,058 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,062 [wrapper] pilotpid: 6106
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,067 [wrapper] Pilot exit status: 0
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,209 [wrapper] pandaids: 6837399407
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,244 [wrapper] cleanup supervisor_pilot  5170 6107
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,252 [wrapper] Test setup, not cleaning
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,256 [wrapper] apfmon messages muted
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,261 [wrapper] ==== wrapper stdout END ====
2025-10-10 22:07:38 (13320): Guest Log: 2025-10-10 20:07:35,266 [wrapper] ==== wrapper stderr END ====
2025-10-10 22:07:38 (13320): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 22:07:38 (13320): Guest Log:     "exeErrorCode": 0,
2025-10-10 22:07:38 (13320): Guest Log:     "exeErrorDiag": "",
2025-10-10 22:07:38 (13320): Guest Log:     "pilotErrorCode": 0,
2025-10-10 22:07:38 (13320): Guest Log:     "pilotErrorDiag": "",
2025-10-10 22:07:38 (13320): Guest Log:  *** Listing of results directory ***
2025-10-10 22:07:38 (13320): Guest Log: total 193492
2025-10-10 22:07:38 (13320): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 03:12 pilot3.tar.gz
2025-10-10 22:07:38 (13320): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 03:25 queuedata.json
2025-10-10 22:07:38 (13320): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 03:26 runpilot2-wrapper.sh
2025-10-10 22:07:38 (13320): Guest Log: -rwxr-xr-x. 1 atlas atlas      5752 Oct 10 15:08 init_data.xml
2025-10-10 22:07:38 (13320): Guest Log: -rwxr-xr-x. 1 atlas atlas    569679 Oct 10 15:08 input.tar.gz
2025-10-10 22:07:38 (13320): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 15:08 start_atlas.sh
2025-10-10 22:07:38 (13320): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 15:08 EVNT.46676267._001279.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 22:07:38 (13320): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 10 15:08 pandaJob.out
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas    975533 Oct 10 15:10 agis_schedconf.cvmfs.json
2025-10-10 22:07:38 (13320): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 15:11 pilot3
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas 191600351 Oct 10 20:05 HITS.46676269._031373.pool.root.1
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 10 20:06 memory_monitor_summary.json
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 20:06 agis_ddmendpoints.agis.ALL.json
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas    353953 Oct 10 20:06 log.46676269._031373.job.log.tgz.1
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas      7789 Oct 10 20:06 heartbeat.json
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas        98 Oct 10 20:07 pilot_heartbeat.json
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas      5063 Oct 10 20:07 pilotlog.txt
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas    998681 Oct 10 20:07 log.46676269._031373.job.log.1
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 20:07 output.list
2025-10-10 22:07:38 (13320): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 20:07 runtime_log
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas   1372160 Oct 10 20:07 result.tar.gz
2025-10-10 22:07:38 (13320): Guest Log: -rw-r--r--. 1 atlas atlas      8670 Oct 10 20:07 runtime_log.err
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas       654 Oct 10 20:07 kxoMDm1wIR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm4FPMDmgqZ2Eo.diag
2025-10-10 22:07:38 (13320): Guest Log: Looking for outputfile HITS.46676269._031373.pool.root.1
2025-10-10 22:07:38 (13320): Guest Log: HITS file was successfully produced
2025-10-10 22:07:38 (13320): Guest Log: -rw-------. 1 atlas atlas 191600351 Oct 10 20:05 /home/atlas/RunAtlas/HITS.46676269._031373.pool.root.1
2025-10-10 22:07:39 (13320): Guest Log: Successfully finished the ATLAS job!
2025-10-10 22:07:39 (13320): Guest Log: Copying the results back to the shared directory!
2025-10-10 22:07:39 (13320): Guest Log:  *** Contents of shared directory: ***
2025-10-10 22:07:39 (13320): Guest Log: total 404420
2025-10-10 22:07:39 (13320): Guest Log: -rwxrwxrwx. 1 root root 220550872 Oct 10 15:08 ATLAS.root_0
2025-10-10 22:07:39 (13320): Guest Log: -rwxrwxrwx. 1 root root 191600351 Oct 10 20:07 HITS.pool.root.1
2025-10-10 22:07:39 (13320): Guest Log: -rwxrwxrwx. 1 root root      5752 Oct 10 15:08 init_data.xml
2025-10-10 22:07:39 (13320): Guest Log: -rwxrwxrwx. 1 root root    569679 Oct 10 08:58 input.tar.gz
2025-10-10 22:07:39 (13320): Guest Log: -rwxrwxrwx. 1 root root   1372160 Oct 10 20:07 result.tar.gz
2025-10-10 22:07:39 (13320): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 10 08:58 start_atlas.sh
2025-10-10 22:07:39 (13320): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 22:07:39 (13320): VM Completion File Detected.
2025-10-10 22:07:39 (13320): Powering off VM.
2025-10-10 22:07:39 (13320): Successfully stopped VM.
2025-10-10 22:07:39 (13320): Deregistering VM. (boinc_e260f598dd8e31a4, slot#2)
2025-10-10 22:07:39 (13320): Removing network bandwidth throttle group from VM.
2025-10-10 22:07:40 (13320): Removing VM from VirtualBox.
2025-10-10 22:07:45 (13320): called boinc_finish(0)

</stderr_txt>
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