Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:00:35 (1136726): wrapper (7.7.26015): starting
13:00:35 (1136726): wrapper: running run_atlas (--nthreads 2)
[2025-10-10 13:00:35] Arguments: --nthreads 2
[2025-10-10 13:00:35] Threads: 2
[2025-10-10 13:00:35] Checking for CVMFS
[2025-10-10 13:00:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 13:00:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 13:00:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 13:00:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 13:00:36] 2.9.2.0 823835 1364 56312 151543 3 57 2383434 36864000 0 130560 0 822617 99.988 42586 931 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 13:00:36] CVMFS is ok
[2025-10-10 13:00:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 13:00:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 13:00:36] Further information can be found at the LHC@home message board.
[2025-10-10 13:00:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 13:00:36] Checking for apptainer binary...
[2025-10-10 13:00:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 13:00:36] Running /usr/bin/apptainer --version
[2025-10-10 13:00:36] apptainer version 1.4.1-1.1
[2025-10-10 13:00:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 13:00:36] atlasA228a
[2025-10-10 13:00:36] apptainer works
[2025-10-10 13:00:36] Set ATHENA_PROC_NUMBER=2
[2025-10-10 13:00:36] Set ATHENA_CORE_NUMBER=2
[2025-10-10 13:00:36] Starting ATLAS job with PandaID=6837399350
[2025-10-10 13:00:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 15:04:14]  *** The last 200 lines of the pilot log: ***
[2025-10-10 15:04:14] 2025-10-10 13:03:42,006 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 15:04:14] 2025-10-10 13:03:42,006 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 15:04:14] 2025-10-10 13:03:42,006 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 15:04:14] 2025-10-10 13:03:42,006 | INFO     | job 6837399350 has completed (purged errors)
[2025-10-10 15:04:14] 2025-10-10 13:03:42,006 | INFO     | overall cleanup function is called
[2025-10-10 15:04:14] 2025-10-10 13:03:43,013 | INFO     | --- collectZombieJob: --- 10, [1146842]
[2025-10-10 15:04:14] 2025-10-10 13:03:43,013 | INFO     | zombie collector waiting for pid 1146842
[2025-10-10 15:04:14] 2025-10-10 13:03:43,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 15:04:14] 2025-10-10 13:03:43,014 | INFO     | collected zombie processes
[2025-10-10 15:04:14] 2025-10-10 13:03:43,014 | INFO     | will attempt to kill all subprocesses of pid=1146842
[2025-10-10 15:04:14] 2025-10-10 13:03:43,048 | INFO     | process IDs to be killed: [1146842] (in reverse order)
[2025-10-10 15:04:14] 2025-10-10 13:03:43,070 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 15:04:14] 2025-10-10 13:03:43,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 15:04:14] 2025-10-10 13:03:43,070 | INFO     | did not find any defunct processes belonging to 1146842
[2025-10-10 15:04:14] 2025-10-10 13:03:43,071 | INFO     | did not find any defunct processes belonging to 1146842
[2025-10-10 15:04:14] 2025-10-10 13:03:43,071 | INFO     | ready for new job
[2025-10-10 15:04:14] 2025-10-10 13:03:43,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 15:04:14] 2025-10-10 13:03:43,072 | INFO     | ***************************************
[2025-10-10 15:04:14] 2025-10-10 13:03:43,072 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 15:04:14] 2025-10-10 13:03:43,072 | INFO     | ***************************************
[2025-10-10 15:04:14] 2025-10-10 13:03:43,072 | INFO     | 
[2025-10-10 15:04:14] 2025-10-10 13:03:43,072 | INFO     | architecture information:
[2025-10-10 15:04:14] 2025-10-10 13:03:43,072 | INFO     | executing command: cat /etc/os-release
[2025-10-10 15:04:14] 2025-10-10 13:03:43,081 | INFO     | cat /etc/os-release:
[2025-10-10 15:04:14] NAME="CentOS Linux"
[2025-10-10 15:04:14] VERSION="7 (Core)"
[2025-10-10 15:04:14] ID="centos"
[2025-10-10 15:04:14] ID_LIKE="rhel fedora"
[2025-10-10 15:04:14] VERSION_ID="7"
[2025-10-10 15:04:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 15:04:14] ANSI_COLOR="0;31"
[2025-10-10 15:04:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 15:04:14] HOME_URL="https://www.centos.org/"
[2025-10-10 15:04:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 15:04:14] 
[2025-10-10 15:04:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 15:04:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 15:04:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 15:04:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 15:04:14] 
[2025-10-10 15:04:14] 2025-10-10 13:03:43,081 | INFO     | ***************************************
[2025-10-10 15:04:14] 2025-10-10 13:03:43,585 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-10 15:04:14] 2025-10-10 13:03:43,597 | INFO     | sufficient remaining disk space (209412161536 B)
[2025-10-10 15:04:14] 2025-10-10 13:03:43,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 15:04:14] 2025-10-10 13:03:43,597 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 15:04:14] 2025-10-10 13:03:43,597 | INFO     | update_server=False
[2025-10-10 15:04:14] 2025-10-10 13:03:43,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 15:04:14] 2025-10-10 13:03:43,597 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:04:14] 2025-10-10 13:03:43,620 | INFO     | all data control threads have been joined
[2025-10-10 15:04:14] 2025-10-10 13:03:44,069 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 15:04:14] 2025-10-10 13:03:44,070 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 15:04:14] 2025-10-10 13:03:44,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:04:14] 2025-10-10 13:03:44,070 | INFO     | will abort loop
[2025-10-10 15:04:14] 2025-10-10 13:03:44,602 | INFO     | [job] retrieve thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:44,603 | INFO     | [job] queue monitor thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:44,608 | INFO     | [data] copytool_in thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:44,625 | INFO     | [data] control thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:44,632 | INFO     | all payload control threads have been joined
[2025-10-10 15:04:14] 2025-10-10 13:03:44,899 | INFO     | all job control threads have been joined
[2025-10-10 15:04:14] 2025-10-10 13:03:44,904 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:45,034 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 15:04:14] 2025-10-10 13:03:45,067 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 15:04:14] 2025-10-10 13:03:45,076 | INFO     | [job] job monitor thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:45,345 | INFO     | [payload] failed_post thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:45,638 | INFO     | [payload] control thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:45,740 | INFO     | [job] validate thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:45,791 | INFO     | [payload] validate_post thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:45,905 | INFO     | [job] control thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:45,971 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:46,039 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:47,041 | INFO     | [data] copytool_out thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:49,074 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:03:53,735 | INFO     | job.realtimelogging is not enabled
[2025-10-10 15:04:14] 2025-10-10 13:03:54,741 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 15:04:14] 2025-10-10 13:04:00,099 | INFO     | [monitor] cgroup control has ended
[2025-10-10 15:04:14] 2025-10-10 13:04:02,133 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140507599406912)>', '<ExcThread(monitor, started 140507317503744)>']
[2025-10-10 15:04:14] 2025-10-10 13:04:07,159 | INFO     | all workflow threads have been joined
[2025-10-10 15:04:14] 2025-10-10 13:04:07,159 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 15:04:14] 2025-10-10 13:04:07,160 | INFO     | traces error code: 0
[2025-10-10 15:04:14] 2025-10-10 13:04:07,160 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 15:04:14] 2025-10-10 13:04:14,458 | INFO     | PID=1140431 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 15:04:14] 2025-10-10 13:04:14,458 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 15:04:14] 2025-10-10 13:04:14,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 15:04:14] 2025-10-10 13:04:14,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 15:04:14] 2025-10-10 13:04:14,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 15:04:14] 2025-10-10 13:04:14,458 | INFO     | [monitor] control thread has ended
[2025-10-10 15:04:14] 2025-10-10 13:04:14,498 [wrapper] ==== pilot stdout END ====
[2025-10-10 15:04:14] 2025-10-10 13:04:14,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 15:04:14] 2025-10-10 13:04:14,502 [wrapper] pilotpid: 1140431
[2025-10-10 15:04:14] 2025-10-10 13:04:14,504 [wrapper] Pilot exit status: 0
[2025-10-10 15:04:14] 2025-10-10 13:04:14,511 [wrapper] pandaids: 6837399350
[2025-10-10 15:04:14] 2025-10-10 13:04:14,524 [wrapper] cleanup supervisor_pilot 1161084 1140432
[2025-10-10 15:04:14] 2025-10-10 13:04:14,526 [wrapper] Test setup, not cleaning
[2025-10-10 15:04:14] 2025-10-10 13:04:14,528 [wrapper] apfmon messages muted
[2025-10-10 15:04:14] 2025-10-10 13:04:14,530 [wrapper] ==== wrapper stdout END ====
[2025-10-10 15:04:14] 2025-10-10 13:04:14,532 [wrapper] ==== wrapper stderr END ====
[2025-10-10 15:04:14]  *** Error codes and diagnostics ***
[2025-10-10 15:04:14]     "exeErrorCode": 0,
[2025-10-10 15:04:14]     "exeErrorDiag": "",
[2025-10-10 15:04:14]     "pilotErrorCode": 0,
[2025-10-10 15:04:14]     "pilotErrorDiag": "",
[2025-10-10 15:04:14]  *** Listing of results directory ***
[2025-10-10 15:04:14] total 408172
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc    557409 Oct 10 05:12 pilot3.tar.gz
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc      5112 Oct 10 05:22 queuedata.json
[2025-10-10 15:04:14] -rwx------ 1 boinc boinc     36292 Oct 10 05:23 runpilot2-wrapper.sh
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc       100 Oct 10 13:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 15:04:14] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 13:00 run_atlas
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc       105 Oct 10 13:00 job.xml
[2025-10-10 15:04:14] -rw-r--r-- 2 boinc boinc 219872753 Oct 10 13:00 EVNT.46676267._001276.pool.root.1
[2025-10-10 15:04:14] -rw-r--r-- 2 boinc boinc    569678 Oct 10 13:00 input.tar.gz
[2025-10-10 15:04:14] -rw-r--r-- 2 boinc boinc     15120 Oct 10 13:00 start_atlas.sh
[2025-10-10 15:04:14] drwxrwx--x 2 boinc boinc      4096 Oct 10 13:00 shared
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc         0 Oct 10 13:00 boinc_setup_complete
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc      6206 Oct 10 13:00 init_data.xml
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc         0 Oct 10 13:00 boinc_lockfile
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc      2550 Oct 10 13:00 pandaJob.out
[2025-10-10 15:04:14] -rw------- 1 boinc boinc    975528 Oct 10 13:00 agis_schedconf.cvmfs.json
[2025-10-10 15:04:14] -rw------- 1 boinc boinc   1560580 Oct 10 13:00 agis_ddmendpoints.agis.ALL.json
[2025-10-10 15:04:14] drwx------ 5 boinc boinc      4096 Oct 10 13:00 pilot3
[2025-10-10 15:04:14] -rw------- 1 boinc boinc 191504614 Oct 10 15:03 HITS.46676269._031316.pool.root.1
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc       530 Oct 10 15:03 boinc_task_state.xml
[2025-10-10 15:04:14] -rw------- 1 boinc boinc        95 Oct 10 15:03 pilot_heartbeat.json
[2025-10-10 15:04:14] -rw------- 1 boinc boinc      1014 Oct 10 15:03 memory_monitor_summary.json
[2025-10-10 15:04:14] -rw------- 1 boinc boinc    286677 Oct 10 15:03 log.46676269._031316.job.log.tgz.1
[2025-10-10 15:04:14] -rw------- 1 boinc boinc      7764 Oct 10 15:03 heartbeat.json
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc        27 Oct 10 15:04 wrapper_checkpoint.txt
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc      8192 Oct 10 15:04 boinc_mmap_file
[2025-10-10 15:04:14] -rw------- 1 boinc boinc       747 Oct 10 15:04 pilotlog.txt
[2025-10-10 15:04:14] -rw------- 1 boinc boinc   1064373 Oct 10 15:04 log.46676269._031316.job.log.1
[2025-10-10 15:04:14] -rw------- 1 boinc boinc       357 Oct 10 15:04 output.list
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc       620 Oct 10 15:04 runtime_log
[2025-10-10 15:04:14] -rw------- 1 boinc boinc   1372160 Oct 10 15:04 result.tar.gz
[2025-10-10 15:04:14] -rw------- 1 boinc boinc       663 Oct 10 15:04 stxLDm5tIR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmf9bNDmP6XLNo.diag
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc      8797 Oct 10 15:04 runtime_log.err
[2025-10-10 15:04:14] -rw-r--r-- 1 boinc boinc     11434 Oct 10 15:04 stderr.txt
[2025-10-10 15:04:14] HITS file was successfully produced:
[2025-10-10 15:04:14] -rw------- 1 boinc boinc 191504614 Oct 10 15:03 shared/HITS.pool.root.1
[2025-10-10 15:04:14]  *** Contents of shared directory: ***
[2025-10-10 15:04:14] total 403664
[2025-10-10 15:04:14] -rw-r--r-- 2 boinc boinc 219872753 Oct 10 13:00 ATLAS.root_0
[2025-10-10 15:04:14] -rw-r--r-- 2 boinc boinc    569678 Oct 10 13:00 input.tar.gz
[2025-10-10 15:04:14] -rw-r--r-- 2 boinc boinc     15120 Oct 10 13:00 start_atlas.sh
[2025-10-10 15:04:14] -rw------- 1 boinc boinc 191504614 Oct 10 15:03 HITS.pool.root.1
[2025-10-10 15:04:14] -rw------- 1 boinc boinc   1372160 Oct 10 15:04 result.tar.gz
15:04:15 (1136726): run_atlas exited; CPU time 14288.655770
15:04:15 (1136726): called boinc_finish(0)

</stderr_txt>
]]>

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