Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:09:34 (3790552): wrapper (7.7.26015): starting
00:09:34 (3790552): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 00:09:34] Arguments: --nthreads 4
[2025-10-11 00:09:34] Threads: 4
[2025-10-11 00:09:34] Checking for CVMFS
[2025-10-11 00:09:34] No cvmfs_config command found, will try listing directly
[2025-10-11 00:09:34] CVMFS is ok
[2025-10-11 00:09:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:09:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:09:34] Further information can be found at the LHC@home message board.
[2025-10-11 00:09:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:09:34] Checking for apptainer binary...
[2025-10-11 00:09:34] which: no apptainer in ((null))
[2025-10-11 00:09:34] apptainer is not installed, using version from CVMFS
[2025-10-11 00:09:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:09:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-10-11 00:09:34] apptainer works
[2025-10-11 00:09:34] Set ATHENA_PROC_NUMBER=4
[2025-10-11 00:09:34] Set ATHENA_CORE_NUMBER=4
[2025-10-11 00:09:35] Starting ATLAS job with PandaID=6837364689
[2025-10-11 00:09:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 03:18:55]  *** The last 200 lines of the pilot log: ***
[2025-10-11 03:18:55] 2025-10-11 01:09:07,074 | INFO     | intersect: -20310913796.753143
[2025-10-11 03:18:55] 2025-10-11 01:09:07,074 | INFO     | chi2: 1.1550514193249608
[2025-10-11 03:18:55] 2025-10-11 01:09:07,075 | INFO     | sum of square deviations: 1550429070.0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,076 | INFO     | sum of deviations: 18951088868.000004
[2025-10-11 03:18:55] 2025-10-11 01:09:07,076 | INFO     | mean x: 1760139394.0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,076 | INFO     | mean y: 2312206.403508772
[2025-10-11 03:18:55] 2025-10-11 01:09:07,076 | INFO     | -- intersect: -21512092238.9167
[2025-10-11 03:18:55] 2025-10-11 01:09:07,076 | INFO     | intersect: -21512092238.9167
[2025-10-11 03:18:55] 2025-10-11 01:09:07,076 | INFO     | chi2: 1.1556859203291538
[2025-10-11 03:18:55] 2025-10-11 01:09:07,076 | INFO     | current chi2=1.1556859203291538 (change=-0.054932706334741496 %)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,077 | INFO     | right removable region: 170
[2025-10-11 03:18:55] 2025-10-11 01:09:07,077 | INFO     | sum of square deviations: 1550429070.0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,078 | INFO     | sum of deviations: 1958790641.9999998
[2025-10-11 03:18:55] 2025-10-11 01:09:07,078 | INFO     | mean x: 1760139699.0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,078 | INFO     | mean y: 2331568.783625731
[2025-10-11 03:18:55] 2025-10-11 01:09:07,078 | INFO     | -- intersect: -2221404581.244764
[2025-10-11 03:18:55] 2025-10-11 01:09:07,078 | INFO     | intersect: -2221404581.244764
[2025-10-11 03:18:55] 2025-10-11 01:09:07,079 | INFO     | chi2: 0.01209556922441778
[2025-10-11 03:18:55] 2025-10-11 01:09:07,079 | INFO     | current chi2=0.01209556922441778 (change=98.95281118900432 %)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,079 | INFO     | sum of square deviations: 1418361477.5
[2025-10-11 03:18:55] 2025-10-11 01:09:07,080 | INFO     | sum of deviations: 2646958329.5000005
[2025-10-11 03:18:55] 2025-10-11 01:09:07,080 | INFO     | mean x: 1760139851.5
[2025-10-11 03:18:55] 2025-10-11 01:09:07,080 | INFO     | mean y: 2330812.1626506024
[2025-10-11 03:18:55] 2025-10-11 01:09:07,080 | INFO     | -- intersect: -3282457244.2817397
[2025-10-11 03:18:55] 2025-10-11 01:09:07,080 | INFO     | intersect: -3282457244.2817397
[2025-10-11 03:18:55] 2025-10-11 01:09:07,081 | INFO     | chi2: 0.0026877372712815484
[2025-10-11 03:18:55] 2025-10-11 01:09:07,081 | INFO     | current chi2=0.0026877372712815484 (change=77.77915845534817 %)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,081 | INFO     | sum of square deviations: 1294014960.0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,082 | INFO     | sum of deviations: 1753050757.0000002
[2025-10-11 03:18:55] 2025-10-11 01:09:07,082 | INFO     | mean x: 1760140004.0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,082 | INFO     | mean y: 2331907.850931677
[2025-10-11 03:18:55] 2025-10-11 01:09:07,082 | INFO     | -- intersect: -2382195985.4264255
[2025-10-11 03:18:55] 2025-10-11 01:09:07,082 | INFO     | intersect: -2382195985.4264255
[2025-10-11 03:18:55] 2025-10-11 01:09:07,082 | INFO     | chi2: 0.001969274694075196
[2025-10-11 03:18:55] 2025-10-11 01:09:07,083 | INFO     | current chi2=0.001969274694075196 (change=26.731131233812143 %)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,083 | INFO     | sum of square deviations: 1177156955.0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,084 | INFO     | sum of deviations: 1137098560.0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,084 | INFO     | mean x: 1760140156.5
[2025-10-11 03:18:55] 2025-10-11 01:09:07,084 | INFO     | mean y: 2332711.0256410255
[2025-10-11 03:18:55] 2025-10-11 01:09:07,084 | INFO     | -- intersect: -1697910258.9989676
[2025-10-11 03:18:55] 2025-10-11 01:09:07,084 | INFO     | intersect: -1697910258.9989676
[2025-10-11 03:18:55] 2025-10-11 01:09:07,084 | INFO     | chi2: 0.0016018892280934233
[2025-10-11 03:18:55] 2025-10-11 01:09:07,084 | INFO     | current chi2=0.0016018892280934233 (change=18.655877064134174 %)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,084 | INFO     | left removable region: 40
[2025-10-11 03:18:55] 2025-10-11 01:09:07,085 | INFO     | sum of square deviations: 681212772.5
[2025-10-11 03:18:55] 2025-10-11 01:09:07,085 | INFO     | sum of deviations: -478234601.5
[2025-10-11 03:18:55] 2025-10-11 01:09:07,086 | INFO     | mean x: 1760140583.5
[2025-10-11 03:18:55] 2025-10-11 01:09:07,086 | INFO     | mean y: 2335268.1615384617
[2025-10-11 03:18:55] 2025-10-11 01:09:07,086 | INFO     | -- intersect: 1238013993.6864624
[2025-10-11 03:18:55] 2025-10-11 01:09:07,086 | INFO     | intersect: 1238013993.6864624
[2025-10-11 03:18:55] 2025-10-11 01:09:07,086 | INFO     | chi2: 0.00023514935601731514
[2025-10-11 03:18:55] 2025-10-11 01:09:07,086 | INFO     | -- intersect: 1238013993.6864624
[2025-10-11 03:18:55] 2025-10-11 01:09:07,086 | INFO     | current memory leak: -0.70 B/s (using 130 data points, chi2=0.00)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | could have reported an average CPU frequency of 2686 MHz (9 samples)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | ..............................
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | . Timing measurements:
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | . get job = 0 s
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | . initial setup = 1 s
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | . payload setup = 5 s
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | . stage-in = 0 s
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | . payload execution = 10729 s
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | . stage-out = 0 s
[2025-10-11 03:18:55] 2025-10-11 01:09:07,087 | INFO     | . log creation = 0 s
[2025-10-11 03:18:55] 2025-10-11 01:09:07,088 | INFO     | ..............................
[2025-10-11 03:18:55] 2025-10-11 01:09:07,187 | INFO     | 
[2025-10-11 03:18:55] 2025-10-11 01:09:07,187 | INFO     | job summary report
[2025-10-11 03:18:55] 2025-10-11 01:09:07,187 | INFO     | --------------------------------------------------
[2025-10-11 03:18:55] 2025-10-11 01:09:07,187 | INFO     | PanDA job id: 6837364689
[2025-10-11 03:18:55] 2025-10-11 01:09:07,187 | INFO     | task id: 46676269
[2025-10-11 03:18:55] 2025-10-11 01:09:07,187 | INFO     | errors: (none)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,187 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 03:18:55] 2025-10-11 01:09:07,187 | INFO     | pilot state: finished 
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | transexitcode: 0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | exeerrorcode: 0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | exeerrordiag: 
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | exitcode: 0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | exitmsg: OK
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | cpuconsumptiontime: 41337 s
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | nevents: 400
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | neventsw: 0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | pid: 3816065
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | pgrp: 3816065
[2025-10-11 03:18:55] 2025-10-11 01:09:07,188 | INFO     | corecount: 4
[2025-10-11 03:18:55] 2025-10-11 01:09:07,189 | INFO     | event service: False
[2025-10-11 03:18:55] 2025-10-11 01:09:07,189 | INFO     | sizes: {0: 2348697, 1: 2348896, 5: 2349158, 11: 2349214, 10737: 2378265, 10738: 2378264, 10739: 2387468, 10742: 2387524, 10747: 2387782}
[2025-10-11 03:18:55] 2025-10-11 01:09:07,189 | INFO     | --------------------------------------------------
[2025-10-11 03:18:55] 2025-10-11 01:09:07,189 | INFO     | 
[2025-10-11 03:18:55] 2025-10-11 01:09:07,189 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-10-11 03:18:55] 2025-10-11 01:09:07,211 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,211 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,211 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,212 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,213 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,213 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,213 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,213 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,213 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 03:18:55] 2025-10-11 01:09:07,213 | INFO     | job 6837364689 has completed (purged errors)
[2025-10-11 03:18:55] 2025-10-11 01:09:07,213 | INFO     | overall cleanup function is called
[2025-10-11 03:18:55] 2025-10-11 01:09:08,219 | INFO     | --- collectZombieJob: --- 10, [3816065]
[2025-10-11 03:18:55] 2025-10-11 01:09:08,219 | INFO     | zombie collector waiting for pid 3816065
[2025-10-11 03:18:55] 2025-10-11 01:09:08,219 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 03:18:55] 2025-10-11 01:09:08,219 | INFO     | collected zombie processes
[2025-10-11 03:18:55] 2025-10-11 01:09:08,219 | INFO     | will attempt to kill all subprocesses of pid=3816065
[2025-10-11 03:18:55] 2025-10-11 01:09:08,558 | INFO     | process IDs to be killed: [3816065] (in reverse order)
[2025-10-11 03:18:55] 2025-10-11 01:09:08,671 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 03:18:55] 2025-10-11 01:09:08,672 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 03:18:55] 2025-10-11 01:09:08,684 | INFO     | did not find any defunct processes belonging to 3816065
[2025-10-11 03:18:55] 2025-10-11 01:09:08,697 | INFO     | did not find any defunct processes belonging to 3816065
[2025-10-11 03:18:55] 2025-10-11 01:09:08,697 | INFO     | ready for new job
[2025-10-11 03:18:55] 2025-10-11 01:09:08,698 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 03:18:55] 2025-10-11 01:09:08,700 | INFO     | ***************************************
[2025-10-11 03:18:55] 2025-10-11 01:09:08,700 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 03:18:55] 2025-10-11 01:09:08,700 | INFO     | ***************************************
[2025-10-11 03:18:55] 2025-10-11 01:09:08,700 | INFO     | 
[2025-10-11 03:18:55] 2025-10-11 01:09:08,704 | INFO     | architecture information:
[2025-10-11 03:18:55] 2025-10-11 01:09:08,704 | INFO     | executing command: cat /etc/os-release
[2025-10-11 03:18:55] 2025-10-11 01:09:08,719 | INFO     | cat /etc/os-release:
[2025-10-11 03:18:55] NAME="CentOS Linux"
[2025-10-11 03:18:55] VERSION="7 (Core)"
[2025-10-11 03:18:55] ID="centos"
[2025-10-11 03:18:55] ID_LIKE="rhel fedora"
[2025-10-11 03:18:55] VERSION_ID="7"
[2025-10-11 03:18:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 03:18:55] ANSI_COLOR="0;31"
[2025-10-11 03:18:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 03:18:55] HOME_URL="https://www.centos.org/"
[2025-10-11 03:18:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 03:18:55] 
[2025-10-11 03:18:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 03:18:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 03:18:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 03:18:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 03:18:55] 
[2025-10-11 03:18:55] 2025-10-11 01:09:08,719 | INFO     | ***************************************
[2025-10-11 03:18:55] 2025-10-11 01:09:09,222 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-10-11 03:18:55] 2025-10-11 01:09:09,239 | INFO     | sufficient remaining disk space (691981516800 B)
[2025-10-11 03:18:55] 2025-10-11 01:09:09,239 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 03:18:55] 2025-10-11 01:09:09,239 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 03:18:55] 2025-10-11 01:09:09,239 | INFO     | update_server=False
[2025-10-11 03:18:55] 2025-10-11 01:09:09,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 03:18:55] 2025-10-11 01:09:09,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 03:18:55] 2025-10-11 01:09:09,240 | INFO     | aborting loop
[2025-10-11 03:18:55] 2025-10-11 01:09:09,247 | INFO     | all payload control threads have been joined
[2025-10-11 03:18:55] 2025-10-11 01:09:09,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 03:18:55] 2025-10-11 01:09:09,869 | INFO     | all data control threads have been joined
[2025-10-11 03:18:55] 2025-10-11 01:09:09,954 | INFO     | all job control threads have been joined
[2025-10-11 03:18:55] 2025-10-11 01:09:10,245 | INFO     | [job] retrieve thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:10,245 | INFO     | [job] job monitor thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:10,252 | INFO     | [payload] control thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:10,356 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:10,684 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:10,874 | INFO     | [data] control thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:10,960 | INFO     | [job] control thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:11,150 | INFO     | [job] validate thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:11,160 | INFO     | [payload] failed_post thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:11,179 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:11,180 | INFO     | [data] copytool_in thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:11,258 | INFO     | [payload] validate_post thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:11,476 | INFO     | [data] copytool_out thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:11,555 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:12,009 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 03:18:55] 2025-10-11 01:09:12,197 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 03:18:55] 2025-10-11 01:09:13,200 | INFO     | [job] queue monitor thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:16,014 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 03:18:55] 2025-10-11 01:09:39,466 | INFO     | PID=3796936 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 03:18:55] 2025-10-11 01:09:39,467 | INFO     | .. there are 4 such processes running
[2025-10-11 03:18:55] 2025-10-11 01:09:39,468 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 03:18:55] 2025-10-11 01:09:39,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 03:18:55] 2025-10-11 01:09:39,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 03:18:55] 2025-10-11 01:09:41,735 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-10-11 03:18:55] 2025-10-11 01:10:00,997 | INFO     | [monitor] cgroup control has ended
[2025-10-11 03:18:55] 2025-10-11 01:10:01,566 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23196294768448)>', '<ExcThread(monitor, started 23195440641792)>']
[2025-10-11 03:18:55] 2025-10-11 01:10:01,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 03:18:55] 2025-10-11 01:10:01,567 | INFO     | [monitor] control thread has ended
[2025-10-11 03:18:55] 2025-10-11 01:10:06,591 | INFO     | all workflow threads have been joined
[2025-10-11 03:18:55] 2025-10-11 01:10:06,591 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 03:18:55] 2025-10-11 01:10:06,592 | INFO     | traces error code: 0
[2025-10-11 03:18:55] 2025-10-11 01:10:06,592 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 03:18:55] 2025-10-11 01:10:06,783 [wrapper] ==== pilot stdout END ====
[2025-10-11 03:18:55] 2025-10-11 01:10:06,786 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 03:18:55] 2025-10-11 01:10:06,788 [wrapper] pilotpid: 3796936
[2025-10-11 03:18:55] 2025-10-11 01:10:06,791 [wrapper] Pilot exit status: 0
[2025-10-11 03:18:55] 2025-10-11 01:10:06,799 [wrapper] pandaids: 6837364689
[2025-10-11 03:18:55] 2025-10-11 01:10:06,873 [wrapper] cleanup supervisor_pilot 4119520 3796937
[2025-10-11 03:18:55] 2025-10-11 01:10:06,876 [wrapper] Test setup, not cleaning
[2025-10-11 03:18:55] 2025-10-11 01:10:06,878 [wrapper] apfmon messages muted
[2025-10-11 03:18:55] 2025-10-11 01:10:06,881 [wrapper] ==== wrapper stdout END ====
[2025-10-11 03:18:55] 2025-10-11 01:10:06,883 [wrapper] ==== wrapper stderr END ====
[2025-10-11 03:18:55]  *** Error codes and diagnostics ***
[2025-10-11 03:18:55]     "exeErrorCode": 0,
[2025-10-11 03:18:55]     "exeErrorDiag": "",
[2025-10-11 03:18:55]     "pilotErrorCode": 0,
[2025-10-11 03:18:55]     "pilotErrorDiag": "",
[2025-10-11 03:18:55]  *** Listing of results directory ***
[2025-10-11 03:18:55] total 408884
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc      5112 Oct 10 00:12 queuedata.json
[2025-10-11 03:18:55] -rwx------ 1 boinc boinc     36292 Oct 10 00:12 runpilot2-wrapper.sh
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc    557409 Oct 10 00:12 pilot3.tar.gz
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc       100 Oct 11 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 03:18:55] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 00:09 run_atlas
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc       105 Oct 11 00:09 job.xml
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc      6634 Oct 11 00:09 init_data.xml
[2025-10-11 03:18:55] -rw-r--r-- 2 boinc boinc 219245264 Oct 11 00:09 EVNT.46676267._001140.pool.root.1
[2025-10-11 03:18:55] -rw-r--r-- 2 boinc boinc     15120 Oct 11 00:09 start_atlas.sh
[2025-10-11 03:18:55] drwxrwx--x 2 boinc boinc      4096 Oct 11 00:09 shared
[2025-10-11 03:18:55] -rw-r--r-- 2 boinc boinc    569675 Oct 11 00:09 input.tar.gz
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc         0 Oct 11 00:09 boinc_lockfile
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc      2550 Oct 11 00:09 pandaJob.out
[2025-10-11 03:18:55] -rw------- 1 boinc boinc    975517 Oct 11 00:09 agis_schedconf.cvmfs.json
[2025-10-11 03:18:55] -rw------- 1 boinc boinc   1560580 Oct 11 00:09 agis_ddmendpoints.agis.ALL.json
[2025-10-11 03:18:55] drwx------ 5 boinc boinc      4096 Oct 11 00:09 pilot3
[2025-10-11 03:18:55] -rw------- 1 boinc boinc 191752130 Oct 11 03:08 HITS.46676269._027127.pool.root.1
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc       529 Oct 11 03:08 boinc_task_state.xml
[2025-10-11 03:18:55] -rw------- 1 boinc boinc      1033 Oct 11 03:08 memory_monitor_summary.json
[2025-10-11 03:18:55] -rw------- 1 boinc boinc    367163 Oct 11 03:08 log.46676269._027127.job.log.tgz.1
[2025-10-11 03:18:55] -rw------- 1 boinc boinc      7829 Oct 11 03:09 heartbeat.json
[2025-10-11 03:18:55] -rw------- 1 boinc boinc        95 Oct 11 03:09 pilot_heartbeat.json
[2025-10-11 03:18:55] -rw------- 1 boinc boinc      4833 Oct 11 03:10 pilotlog.txt
[2025-10-11 03:18:55] -rw------- 1 boinc boinc   1531849 Oct 11 03:10 log.46676269._027127.job.log.1
[2025-10-11 03:18:55] -rw------- 1 boinc boinc       357 Oct 11 03:10 output.list
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc       620 Oct 11 03:10 runtime_log
[2025-10-11 03:18:55] -rw------- 1 boinc boinc   1914880 Oct 11 03:10 result.tar.gz
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc      9070 Oct 11 03:10 runtime_log.err
[2025-10-11 03:18:55] -rw------- 1 boinc boinc       665 Oct 11 03:10 DGaMDmk3DR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4TbNDmtHxlwm.diag
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc        26 Oct 11 03:18 wrapper_checkpoint.txt
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc      8192 Oct 11 03:18 boinc_mmap_file
[2025-10-11 03:18:55] -rw-r--r-- 1 boinc boinc     20733 Oct 11 03:18 stderr.txt
[2025-10-11 03:18:55] HITS file was successfully produced:
[2025-10-11 03:18:55] -rw------- 1 boinc boinc 191752130 Oct 11 03:08 shared/HITS.pool.root.1
[2025-10-11 03:18:55]  *** Contents of shared directory: ***
[2025-10-11 03:18:55] total 403824
[2025-10-11 03:18:55] -rw-r--r-- 2 boinc boinc 219245264 Oct 11 00:09 ATLAS.root_0
[2025-10-11 03:18:55] -rw-r--r-- 2 boinc boinc     15120 Oct 11 00:09 start_atlas.sh
[2025-10-11 03:18:55] -rw-r--r-- 2 boinc boinc    569675 Oct 11 00:09 input.tar.gz
[2025-10-11 03:18:55] -rw------- 1 boinc boinc 191752130 Oct 11 03:08 HITS.pool.root.1
[2025-10-11 03:18:55] -rw------- 1 boinc boinc   1914880 Oct 11 03:10 result.tar.gz
03:18:57 (3790552): run_atlas exited; CPU time 41789.728440
03:18:57 (3790552): called boinc_finish(0)

</stderr_txt>
]]>

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