Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 09:58:19 (12164): vboxwrapper version 26210
2025-10-10 09:58:19 (12164): BOINC client version: 8.2.4
2025-10-10 09:58:20 (12164): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-10 09:58:20 (12164): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 09:58:20 (12164): Create VM. (boinc_7b679aea872041f7, slot#0)
2025-10-10 09:58:21 (12164): Setting Memory Size for VM. (4300MB)
2025-10-10 09:58:21 (12164): Setting CPU Count for VM. (3)
2025-10-10 09:58:21 (12164): Setting Chipset Options for VM.
2025-10-10 09:58:22 (12164): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 09:58:22 (12164): Setting Boot Options for VM.
2025-10-10 09:58:22 (12164): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 09:58:23 (12164): Enabling VM Network Access.
2025-10-10 09:58:23 (12164): Disabling USB Support for VM.
2025-10-10 09:58:23 (12164): Disabling COM Port Support for VM.
2025-10-10 09:58:23 (12164): Disabling LPT Port Support for VM.
2025-10-10 09:58:24 (12164): Disabling Audio Support for VM.
2025-10-10 09:58:24 (12164): Disabling Clipboard Support for VM.
2025-10-10 09:58:24 (12164): Disabling Drag and Drop Support for VM.
2025-10-10 09:58:24 (12164): Adding storage controller(s) to VM.
2025-10-10 09:58:25 (12164): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 09:58:27 (12164): Adding VirtualBox Guest Additions to VM.
2025-10-10 09:58:27 (12164): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 09:58:27 (12164): forwarding host port 63876 to guest port 80
2025-10-10 09:58:28 (12164): Enabling remote desktop for VM.
2025-10-10 09:58:28 (12164): Required extension pack not installed, remote desktop not enabled.
2025-10-10 09:58:28 (12164): Enabling shared directory for VM.
2025-10-10 09:58:28 (12164): Starting VM using VBoxManage interface. (boinc_7b679aea872041f7, slot#0)
2025-10-10 09:58:33 (12164): Successfully started VM. (PID = '25100')
2025-10-10 09:58:33 (12164): Reporting VM Process ID to BOINC.
2025-10-10 09:58:33 (12164): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-10 09:58:33 (12164): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 09:58:33 (12164): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 09:58:33 (12164): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 09:58:33 (12164): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 09:58:33 (12164): Detected: Web Application Enabled (http://localhost:63876)
2025-10-10 09:58:34 (12164): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 09:58:44 (12164): Preference change detected
2025-10-10 09:58:44 (12164): Setting CPU throttle for VM. (70%)
2025-10-10 09:58:44 (12164): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 09:58:45 (12164): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 09:58:46 (12164): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 09:58:46 (12164): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 09:58:49 (12164): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 09:58:49 (12164): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 09:58:49 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 09:58:54 (12164): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 09:58:54 (12164): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-10 09:59:00 (12164): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 09:59:00 (12164): Guest Log: 00:00:00.000106 main     Log opened 2025-10-10T09:58:47.494770000Z
2025-10-10 09:59:00 (12164): Guest Log: 00:00:00.000173 main     OS Product: Linux
2025-10-10 09:59:00 (12164): Guest Log: 00:00:00.000190 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 09:59:00 (12164): Guest Log: 00:00:00.000204 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 09:59:00 (12164): Guest Log: 00:00:00.000223 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 09:59:00 (12164): Guest Log: 00:00:00.000223 main     Process ID: 1297
2025-10-10 09:59:00 (12164): Guest Log: 00:00:00.000224 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 09:59:00 (12164): Guest Log: 00:00:00.000712 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 09:59:00 (12164): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 09:59:00 (12164): Guest Log: [INFO] Mounting shared directory
2025-10-10 09:59:00 (12164): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 09:59:10 (12164): Guest Log: 00:00:10.002773 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 179 749 298 000ns (GuestNow=1 760 083 147 747 419 000 ns GuestLast=1 760 090 327 496 717 000 ns fSetTimeLastLoop=true )
2025-10-10 09:59:36 (12164): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 09:59:36 (12164): Guest Log: [INFO] Detected branch: prod
2025-10-10 09:59:36 (12164): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 09:59:36 (12164): Guest Log: Copying input files
2025-10-10 09:59:37 (12164): Guest Log: Copied input files into RunAtlas.
2025-10-10 09:59:37 (12164): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 09:59:37 (12164): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 09:59:37 (12164): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 09:59:37 (12164): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 10:00:07 (12164): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 10:00:08 (12164): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 10:00:08 (12164): Guest Log: 2.6.3.0 1596 0 32192 151538 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 10:00:08 (12164): Guest Log: copied the webapp to /var/www
2025-10-10 10:00:08 (12164): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-10 10:00:08 (12164): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-10 10:00:09 (12164): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 10:00:09 (12164): Guest Log:  *** Starting ATLAS job. (PandaID=6837367427 taskID=46676269) ***
2025-10-10 10:50:57 (12164): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 10:51:17 (12164): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 11:39:08 (12164): Status Report: Elapsed Time: '6000.000000'
2025-10-10 11:39:08 (12164): Status Report: CPU Time: '11558.265625'
2025-10-10 12:18:25 (12164): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 12:18:45 (12164): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 12:38:05 (12164): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 12:38:25 (12164): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 13:19:53 (12164): Status Report: Elapsed Time: '12000.000000'
2025-10-10 13:19:53 (12164): Status Report: CPU Time: '25106.390625'
2025-10-10 13:39:40 (12164): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 13:40:00 (12164): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:29:53 (12164): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:30:13 (12164): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 15:00:37 (12164): Status Report: Elapsed Time: '18000.000000'
2025-10-10 15:00:37 (12164): Status Report: CPU Time: '38639.906250'
2025-10-10 15:12:46 (12164): Guest Log:  *** Job finished ***
2025-10-10 15:12:46 (12164): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:10:42,810 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:10:42,810 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:01,096 | INFO     | [monitor] cgroup control has ended
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:01,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139856310298432)>', '<ExcThread(monitor, started 139855610771200)>']
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:01,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:01,918 | INFO     | [monitor] control thread has ended
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:06,626 | INFO     | all workflow threads have been joined
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:06,626 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:06,626 | INFO     | traces error code: 0
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:06,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:06,770 [wrapper] ==== pilot stdout END ====
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:06,773 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:06,776 [wrapper] pilotpid: 5999
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:06,779 [wrapper] Pilot exit status: 0
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:07,651 [wrapper] pandaids: 6837367427
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:07,678 [wrapper] cleanup supervisor_pilot 19004 6000
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:07,681 [wrapper] Test setup, not cleaning
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:07,684 [wrapper] apfmon messages muted
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:07,687 [wrapper] ==== wrapper stdout END ====
2025-10-10 15:12:46 (12164): Guest Log: 2025-10-10 13:11:07,690 [wrapper] ==== wrapper stderr END ====
2025-10-10 15:12:46 (12164): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 15:12:46 (12164): Guest Log:     "exeErrorCode": 0,
2025-10-10 15:12:46 (12164): Guest Log:     "exeErrorDiag": "",
2025-10-10 15:12:46 (12164): Guest Log:     "pilotErrorCode": 0,
2025-10-10 15:12:46 (12164): Guest Log:     "pilotErrorDiag": "",
2025-10-10 15:12:46 (12164): Guest Log:  *** Listing of results directory ***
2025-10-10 15:12:46 (12164): Guest Log: total 195296
2025-10-10 15:12:46 (12164): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct  9 22:55 pilot3.tar.gz
2025-10-10 15:12:46 (12164): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  9 23:10 queuedata.json
2025-10-10 15:12:46 (12164): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  9 23:12 runpilot2-wrapper.sh
2025-10-10 15:12:46 (12164): Guest Log: -rwxr-xr-x. 1 atlas atlas      8456 Oct 10 07:59 init_data.xml
2025-10-10 15:12:46 (12164): Guest Log: -rwxr-xr-x. 1 atlas atlas    569679 Oct 10 07:59 input.tar.gz
2025-10-10 15:12:46 (12164): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 07:59 start_atlas.sh
2025-10-10 15:12:46 (12164): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 07:59 EVNT.46676267._001169.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 15:12:46 (12164): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 10 08:00 pandaJob.out
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas    975454 Oct 10 08:03 agis_schedconf.cvmfs.json
2025-10-10 15:12:46 (12164): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 08:03 pilot3
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas 190452404 Oct 10 13:09 HITS.46676269._027843.pool.root.1
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas      1037 Oct 10 13:09 memory_monitor_summary.json
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 13:09 agis_ddmendpoints.agis.ALL.json
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas    427362 Oct 10 13:09 log.46676269._027843.job.log.tgz.1
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 13:10 pilot_heartbeat.json
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas      7814 Oct 10 13:10 heartbeat.json
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 10 13:11 pilotlog.txt
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas   2418786 Oct 10 13:11 log.46676269._027843.job.log.1
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 13:11 output.list
2025-10-10 15:12:46 (12164): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 13:11 runtime_log
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas   2867200 Oct 10 13:11 result.tar.gz
2025-10-10 15:12:46 (12164): Guest Log: -rw-r--r--. 1 atlas atlas      8624 Oct 10 13:11 runtime_log.err
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas       656 Oct 10 13:11 AEKLDmzyER8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhabNDm96lHqm.diag
2025-10-10 15:12:46 (12164): Guest Log: Looking for outputfile HITS.46676269._027843.pool.root.1
2025-10-10 15:12:46 (12164): Guest Log: HITS file was successfully produced
2025-10-10 15:12:46 (12164): Guest Log: -rw-------. 1 atlas atlas 190452404 Oct 10 13:09 /home/atlas/RunAtlas/HITS.46676269._027843.pool.root.1
2025-10-10 15:12:47 (12164): Guest Log: Successfully finished the ATLAS job!
2025-10-10 15:12:47 (12164): Guest Log: Copying the results back to the shared directory!
2025-10-10 15:12:47 (12164): Guest Log:  *** Contents of shared directory: ***
2025-10-10 15:12:47 (12164): Guest Log: total 404588
2025-10-10 15:12:47 (12164): Guest Log: -rwxrwxrwx. 1 root root 220369199 Oct 10 07:58 ATLAS.root_0
2025-10-10 15:12:47 (12164): Guest Log: -rwxrwxrwx. 1 root root 190452404 Oct 10  2025 HITS.pool.root.1
2025-10-10 15:12:47 (12164): Guest Log: -rwxrwxrwx. 1 root root      8456 Oct 10 07:58 init_data.xml
2025-10-10 15:12:47 (12164): Guest Log: -rwxrwxrwx. 1 root root    569679 Oct 10 07:58 input.tar.gz
2025-10-10 15:12:47 (12164): Guest Log: -rwxrwxrwx. 1 root root   2867200 Oct 10  2025 result.tar.gz
2025-10-10 15:12:47 (12164): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 10 07:58 start_atlas.sh
2025-10-10 15:12:47 (12164): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 15:12:47 (12164): VM Completion File Detected.
2025-10-10 15:12:47 (12164): Powering off VM.
2025-10-10 15:12:47 (12164): Successfully stopped VM.
2025-10-10 15:12:47 (12164): Deregistering VM. (boinc_7b679aea872041f7, slot#0)
2025-10-10 15:12:47 (12164): Removing network bandwidth throttle group from VM.
2025-10-10 15:12:47 (12164): Removing VM from VirtualBox.
2025-10-10 15:12:53 (12164): called boinc_finish(0)

</stderr_txt>
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