Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
09:10:14 (3286797): wrapper (7.7.26015): starting
09:10:14 (3286797): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 09:10:14] Arguments: --nthreads 12
[2025-10-10 09:10:14] Threads: 12
[2025-10-10 09:10:14] Checking for CVMFS
[2025-10-10 09:10:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 09:10:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 09:10:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 09:10:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 09:10:14] 2.13.2.0 3843265 1626 59856 151548 2 57 5617997 6144000 3668 130560 0 9621617 99.999 52108 203 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 09:10:14] CVMFS is ok
[2025-10-10 09:10:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 09:10:14] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 09:10:14] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 09:10:14] Further information can be found at the LHC@home message board.
[2025-10-10 09:10:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 09:10:14] Checking for apptainer binary...
[2025-10-10 09:10:14] apptainer is not installed, using version from CVMFS
[2025-10-10 09:10:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 09:10:16] XeonFire
[2025-10-10 09:10:16] apptainer works
[2025-10-10 09:10:16] Set ATHENA_PROC_NUMBER=12
[2025-10-10 09:10:16] Set ATHENA_CORE_NUMBER=12
[2025-10-10 09:10:16] Starting ATLAS job with PandaID=6837328008
[2025-10-10 09:10:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 10:02:51]  *** The last 200 lines of the pilot log: ***
[2025-10-10 10:02:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-10 10:02:51]  replicas=None
[2025-10-10 10:02:51]  scope=mc23_13p6TeV
[2025-10-10 10:02:51]  status=None
[2025-10-10 10:02:51]  status_code=0
[2025-10-10 10:02:51]  storage_token=
[2025-10-10 10:02:51]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6837328008/log.46676269._013442.job.log.tgz.1
[2025-10-10 10:02:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/64/log.46676269._013442.job.log.tgz.1
[2025-10-10 10:02:51]  workdir=None
[2025-10-10 10:02:51] ]
[2025-10-10 10:02:51] 2025-10-10 15:02:11,011 | INFO     | transferring file log.46676269._013442.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6837328008/log.46676269._013442.job.log.tgz.1 to /var/lib/boinc
[2025-10-10 10:02:51] 2025-10-10 15:02:11,011 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6837328008/log.46676269._013442.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.466762
[2025-10-10 10:02:51] 2025-10-10 15:02:11,031 | INFO     | adding to output.list: log.46676269._013442.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/64/log.46676269._013442.job.log.tg
[2025-10-10 10:02:51] 2025-10-10 15:02:11,032 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 10:02:51] 2025-10-10 15:02:11,032 | INFO     | summary of transferred files:
[2025-10-10 10:02:51] 2025-10-10 15:02:11,033 | INFO     |  -- lfn=log.46676269._013442.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 10:02:51] 2025-10-10 15:02:11,033 | INFO     | stage-out finished correctly
[2025-10-10 10:02:51] 2025-10-10 15:02:11,599 | INFO     | time since job start (3091s) is within the limit (172800.0s)
[2025-10-10 10:02:51] 2025-10-10 15:02:11,804 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 10:02:51] 2025-10-10 15:02:11,905 | INFO     | job 6837328008 has state=finished
[2025-10-10 10:02:51] 2025-10-10 15:02:11,905 | INFO     | preparing for final server update for job 6837328008 in state='finished'
[2025-10-10 10:02:51] 2025-10-10 15:02:11,906 | INFO     | this job has now completed (state=finished)
[2025-10-10 10:02:51] 2025-10-10 15:02:11,906 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 10:02:51] 2025-10-10 15:02:11,906 | INFO     | log transfer has been attempted: DONE
[2025-10-10 10:02:51] 2025-10-10 15:02:11,906 | INFO     | job 6837328008 has finished - writing final server update
[2025-10-10 10:02:51] 2025-10-10 15:02:11,907 | INFO     | total number of processed events: 400 (read)
[2025-10-10 10:02:51] 2025-10-10 15:02:11,907 | INFO     | executing command: lscpu
[2025-10-10 10:02:51] 2025-10-10 15:02:11,979 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 10:02:51] 2025-10-10 15:02:13,605 | INFO     | time since job start (3093s) is within the limit (172800.0s)
[2025-10-10 10:02:51] 2025-10-10 15:02:15,610 | INFO     | time since job start (3095s) is within the limit (172800.0s)
[2025-10-10 10:02:51] 2025-10-10 15:02:16,131 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 10:02:51] 2025-10-10 15:02:16,166 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2417.611329545454
[2025-10-10 10:02:51] 2025-10-10 15:02:16,186 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6837328008/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 10:02:51] 2025-10-10 15:02:16,187 | INFO     | extracted standard info from prmon json
[2025-10-10 10:02:51] 2025-10-10 15:02:16,187 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 10:02:51] 2025-10-10 15:02:16,187 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 10:02:51] 2025-10-10 15:02:16,188 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 10:02:51] 2025-10-10 15:02:16,188 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 10:02:51] 2025-10-10 15:02:16,190 | INFO     | fitting pss+swap vs Time
[2025-10-10 10:02:51] 2025-10-10 15:02:16,190 | INFO     | sum of square deviations: 26400495.0
[2025-10-10 10:02:51] 2025-10-10 15:02:16,191 | INFO     | sum of deviations: -2357511255.5
[2025-10-10 10:02:51] 2025-10-10 15:02:16,191 | INFO     | mean x: 1760107085.5
[2025-10-10 10:02:51] 2025-10-10 15:02:16,191 | INFO     | mean y: 2778374.7954545454
[2025-10-10 10:02:51] 2025-10-10 15:02:16,191 | INFO     | -- intersect: 157176811094.69522
[2025-10-10 10:02:51] 2025-10-10 15:02:16,192 | INFO     | intersect: 157176811094.69522
[2025-10-10 10:02:51] 2025-10-10 15:02:16,192 | INFO     | chi2: 0.007411169725920988
[2025-10-10 10:02:51] 2025-10-10 15:02:16,192 | INFO     | -- intersect: 157176811094.69522
[2025-10-10 10:02:51] 2025-10-10 15:02:16,192 | INFO     | current memory leak: -89.30 B/s (using 44 data points, chi2=0.01)
[2025-10-10 10:02:51] 2025-10-10 15:02:16,193 | INFO     | could have reported an average CPU frequency of 2418 MHz (5 samples)
[2025-10-10 10:02:51] 2025-10-10 15:02:16,193 | INFO     | ..............................
[2025-10-10 10:02:51] 2025-10-10 15:02:16,193 | INFO     | . Timing measurements:
[2025-10-10 10:02:51] 2025-10-10 15:02:16,193 | INFO     | . get job = 0 s
[2025-10-10 10:02:51] 2025-10-10 15:02:16,194 | INFO     | . initial setup = 13 s
[2025-10-10 10:02:51] 2025-10-10 15:02:16,194 | INFO     | . payload setup = 6 s
[2025-10-10 10:02:51] 2025-10-10 15:02:16,194 | INFO     | . stage-in = 0 s
[2025-10-10 10:02:51] 2025-10-10 15:02:16,194 | INFO     | . payload execution = 3063 s
[2025-10-10 10:02:51] 2025-10-10 15:02:16,194 | INFO     | . stage-out = 0 s
[2025-10-10 10:02:51] 2025-10-10 15:02:16,194 | INFO     | . log creation = 0 s
[2025-10-10 10:02:51] 2025-10-10 15:02:16,195 | INFO     | ..............................
[2025-10-10 10:02:51] 2025-10-10 15:02:16,305 | INFO     | 
[2025-10-10 10:02:51] 2025-10-10 15:02:16,305 | INFO     | job summary report
[2025-10-10 10:02:51] 2025-10-10 15:02:16,305 | INFO     | --------------------------------------------------
[2025-10-10 10:02:51] 2025-10-10 15:02:16,306 | INFO     | PanDA job id: 6837328008
[2025-10-10 10:02:51] 2025-10-10 15:02:16,306 | INFO     | task id: 46676269
[2025-10-10 10:02:51] 2025-10-10 15:02:16,306 | INFO     | errors: (none)
[2025-10-10 10:02:51] 2025-10-10 15:02:16,306 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 10:02:51] 2025-10-10 15:02:16,306 | INFO     | pilot state: finished 
[2025-10-10 10:02:51] 2025-10-10 15:02:16,306 | INFO     | transexitcode: 0
[2025-10-10 10:02:51] 2025-10-10 15:02:16,306 | INFO     | exeerrorcode: 0
[2025-10-10 10:02:51] 2025-10-10 15:02:16,307 | INFO     | exeerrordiag: 
[2025-10-10 10:02:51] 2025-10-10 15:02:16,307 | INFO     | exitcode: 0
[2025-10-10 10:02:51] 2025-10-10 15:02:16,307 | INFO     | exitmsg: OK
[2025-10-10 10:02:51] 2025-10-10 15:02:16,307 | INFO     | cpuconsumptiontime: 32769 s
[2025-10-10 10:02:51] 2025-10-10 15:02:16,307 | INFO     | nevents: 400
[2025-10-10 10:02:51] 2025-10-10 15:02:16,307 | INFO     | neventsw: 0
[2025-10-10 10:02:51] 2025-10-10 15:02:16,307 | INFO     | pid: 3297899
[2025-10-10 10:02:51] 2025-10-10 15:02:16,308 | INFO     | pgrp: 3297899
[2025-10-10 10:02:51] 2025-10-10 15:02:16,308 | INFO     | corecount: 12
[2025-10-10 10:02:51] 2025-10-10 15:02:16,308 | INFO     | event service: False
[2025-10-10 10:02:51] 2025-10-10 15:02:16,308 | INFO     | sizes: {0: 2348692, 1: 2348891, 5: 2349153, 11: 2349209, 3073: 2374492, 3074: 2383504, 3075: 2383688, 3079: 2383914}
[2025-10-10 10:02:51] 2025-10-10 15:02:16,308 | INFO     | --------------------------------------------------
[2025-10-10 10:02:51] 2025-10-10 15:02:16,308 | INFO     | 
[2025-10-10 10:02:51] 2025-10-10 15:02:16,308 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-10 10:02:51] 2025-10-10 15:02:16,334 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,334 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,334 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,335 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,335 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,335 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,335 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,336 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,336 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,336 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,336 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,336 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,336 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,336 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,337 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 10:02:51] 2025-10-10 15:02:16,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,337 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 10:02:51] 2025-10-10 15:02:16,337 | INFO     | job 6837328008 has completed (purged errors)
[2025-10-10 10:02:51] 2025-10-10 15:02:16,337 | INFO     | overall cleanup function is called
[2025-10-10 10:02:51] 2025-10-10 15:02:16,671 | WARNING  | process 3297899 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 10:02:51] 2025-10-10 15:02:16,988 | INFO     | using path: /var/lib/boinc-client/slots/2/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 10:02:51] 2025-10-10 15:02:17,348 | INFO     | --- collectZombieJob: --- 10, [3297899]
[2025-10-10 10:02:51] 2025-10-10 15:02:17,348 | INFO     | zombie collector waiting for pid 3297899
[2025-10-10 10:02:51] 2025-10-10 15:02:17,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 10:02:51] 2025-10-10 15:02:17,348 | INFO     | collected zombie processes
[2025-10-10 10:02:51] 2025-10-10 15:02:17,349 | INFO     | will attempt to kill all subprocesses of pid=3297899
[2025-10-10 10:02:51] 2025-10-10 15:02:17,490 | INFO     | number of running child processes to parent process 3297899: 1
[2025-10-10 10:02:51] 2025-10-10 15:02:17,490 | INFO     | maximum number of monitored processes: 6
[2025-10-10 10:02:51] 2025-10-10 15:02:17,491 | INFO     | aborting job monitoring since job object (job id=6837328008) has expired
[2025-10-10 10:02:51] 2025-10-10 15:02:17,828 | INFO     | process IDs to be killed: [3297899] (in reverse order)
[2025-10-10 10:02:51] 2025-10-10 15:02:17,954 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 10:02:51] 2025-10-10 15:02:17,954 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 10:02:51] 2025-10-10 15:02:17,964 | INFO     | did not find any defunct processes belonging to 3297899
[2025-10-10 10:02:51] 2025-10-10 15:02:17,972 | INFO     | did not find any defunct processes belonging to 3297899
[2025-10-10 10:02:51] 2025-10-10 15:02:17,972 | INFO     | ready for new job
[2025-10-10 10:02:51] 2025-10-10 15:02:17,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 10:02:51] 2025-10-10 15:02:17,974 | INFO     | ***************************************
[2025-10-10 10:02:51] 2025-10-10 15:02:17,974 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 10:02:51] 2025-10-10 15:02:17,974 | INFO     | ***************************************
[2025-10-10 10:02:51] 2025-10-10 15:02:17,974 | INFO     | 
[2025-10-10 10:02:51] 2025-10-10 15:02:17,979 | INFO     | architecture information:
[2025-10-10 10:02:51] 2025-10-10 15:02:17,980 | INFO     | executing command: cat /etc/os-release
[2025-10-10 10:02:51] 2025-10-10 15:02:17,998 | INFO     | cat /etc/os-release:
[2025-10-10 10:02:51] NAME="CentOS Linux"
[2025-10-10 10:02:51] VERSION="7 (Core)"
[2025-10-10 10:02:51] ID="centos"
[2025-10-10 10:02:51] ID_LIKE="rhel fedora"
[2025-10-10 10:02:51] VERSION_ID="7"
[2025-10-10 10:02:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 10:02:51] ANSI_COLOR="0;31"
[2025-10-10 10:02:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 10:02:51] HOME_URL="https://www.centos.org/"
[2025-10-10 10:02:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 10:02:51] 
[2025-10-10 10:02:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 10:02:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 10:02:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 10:02:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 10:02:51] 
[2025-10-10 10:02:51] 2025-10-10 15:02:17,998 | INFO     | ***************************************
[2025-10-10 10:02:51] 2025-10-10 15:02:18,500 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-10 10:02:51] 2025-10-10 15:02:18,518 | INFO     | sufficient remaining disk space (1814917283840 B)
[2025-10-10 10:02:51] 2025-10-10 15:02:18,518 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 10:02:51] 2025-10-10 15:02:18,518 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 10:02:51] 2025-10-10 15:02:18,518 | INFO     | update_server=False
[2025-10-10 10:02:51] 2025-10-10 15:02:18,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 10:02:51] 2025-10-10 15:02:18,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 10:02:51] 2025-10-10 15:02:18,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:02:51] 2025-10-10 15:02:18,519 | INFO     | aborting loop
[2025-10-10 10:02:51] 2025-10-10 15:02:19,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 10:02:51] 2025-10-10 15:02:19,178 | INFO     | all payload control threads have been joined
[2025-10-10 10:02:51] 2025-10-10 15:02:19,265 | INFO     | all data control threads have been joined
[2025-10-10 10:02:51] 2025-10-10 15:02:19,523 | INFO     | [job] retrieve thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:19,525 | INFO     | [job] job monitor thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:20,007 | INFO     | [payload] failed_post thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:20,070 | INFO     | all job control threads have been joined
[2025-10-10 10:02:51] 2025-10-10 15:02:20,115 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:20,184 | INFO     | [payload] control thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:20,270 | INFO     | [data] control thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:20,313 | INFO     | [job] validate thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:20,637 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:20,722 | INFO     | [data] copytool_in thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:20,799 | INFO     | [payload] validate_post thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:20,830 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:21,075 | INFO     | [job] control thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:21,150 | INFO     | [data] copytool_out thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:21,315 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 10:02:51] 2025-10-10 15:02:22,320 | INFO     | [job] queue monitor thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:22,525 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:29,272 | INFO     | job.realtimelogging is not enabled
[2025-10-10 10:02:51] 2025-10-10 15:02:30,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 10:02:51] 2025-10-10 15:02:45,098 | INFO     | [monitor] cgroup control has ended
[2025-10-10 10:02:51] 2025-10-10 15:02:46,071 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130411507914560)>', '<ExcThread(monitor, started 130410809898752)>']
[2025-10-10 10:02:51] 2025-10-10 15:02:49,160 | INFO     | PID=3290877 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 10:02:51] 2025-10-10 15:02:49,161 | INFO     | .. there are 5 such processes running
[2025-10-10 10:02:51] 2025-10-10 15:02:49,162 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 10:02:51] 2025-10-10 15:02:49,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 10:02:51] 2025-10-10 15:02:49,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 10:02:51] 2025-10-10 15:02:49,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 10:02:51] 2025-10-10 15:02:49,162 | INFO     | [monitor] control thread has ended
[2025-10-10 10:02:51] 2025-10-10 15:02:51,096 | INFO     | all workflow threads have been joined
[2025-10-10 10:02:51] 2025-10-10 15:02:51,096 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 10:02:51] 2025-10-10 15:02:51,097 | INFO     | traces error code: 0
[2025-10-10 10:02:51] 2025-10-10 15:02:51,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 10:02:51] 2025-10-10 15:02:51,200 [wrapper] ==== pilot stdout END ====
[2025-10-10 10:02:51] 2025-10-10 15:02:51,203 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 10:02:51] 2025-10-10 15:02:51,206 [wrapper] pilotpid: 3290877
[2025-10-10 10:02:51] 2025-10-10 15:02:51,209 [wrapper] Pilot exit status: 0
[2025-10-10 10:02:51] 2025-10-10 15:02:51,220 [wrapper] pandaids: 6837328008
[2025-10-10 10:02:51] 2025-10-10 15:02:51,291 [wrapper] cleanup supervisor_pilot 3424118 3290878
[2025-10-10 10:02:51] 2025-10-10 15:02:51,294 [wrapper] Test setup, not cleaning
[2025-10-10 10:02:51] 2025-10-10 15:02:51,297 [wrapper] apfmon messages muted
[2025-10-10 10:02:51] 2025-10-10 15:02:51,300 [wrapper] ==== wrapper stdout END ====
[2025-10-10 10:02:51] 2025-10-10 15:02:51,303 [wrapper] ==== wrapper stderr END ====
[2025-10-10 10:02:51]  *** Error codes and diagnostics ***
[2025-10-10 10:02:51]     "exeErrorCode": 0,
[2025-10-10 10:02:51]     "exeErrorDiag": "",
[2025-10-10 10:02:51]     "pilotErrorCode": 0,
[2025-10-10 10:02:51]     "pilotErrorDiag": "",
[2025-10-10 10:02:51]  *** Listing of results directory ***
[2025-10-10 10:02:51] total 419992
[2025-10-10 10:02:51] -rw-r--r-- 1 mark mark    557409 Oct  9 05:27 pilot3.tar.gz
[2025-10-10 10:02:51] -rwx------ 1 mark mark     36292 Oct  9 05:43 runpilot2-wrapper.sh
[2025-10-10 10:02:51] -rw-r--r-- 1 mark mark      5112 Oct  9 05:45 queuedata.json
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark       100 Oct 10 09:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 10:02:51] -rwxr-xr-x 1 mark mark      7986 Oct 10 09:10 run_atlas
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark       105 Oct 10 09:10 job.xml
[2025-10-10 10:02:51] -rw-r--r-- 2 mark mark 220852179 Oct 10 09:10 EVNT.46676267._000548.pool.root.1
[2025-10-10 10:02:51] -rw-r--r-- 2 mark mark     15120 Oct 10 09:10 start_atlas.sh
[2025-10-10 10:02:51] drwxrwx--x 2 mark mark      4096 Oct 10 09:10 shared
[2025-10-10 10:02:51] -rw-r--r-- 2 mark mark    569683 Oct 10 09:10 input.tar.gz
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark         0 Oct 10 09:10 boinc_setup_complete
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark      9229 Oct 10 09:10 init_data.xml
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark         0 Oct 10 09:10 boinc_lockfile
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark      2550 Oct 10 09:10 pandaJob.out
[2025-10-10 10:02:51] -rw------- 1 mark mark    975525 Oct 10 09:10 agis_schedconf.cvmfs.json
[2025-10-10 10:02:51] -rw------- 1 mark mark   1560580 Oct 10 09:10 agis_ddmendpoints.agis.ALL.json
[2025-10-10 10:02:51] drwx------ 5 mark mark      4096 Oct 10 09:10 pilot3
[2025-10-10 10:02:51] -rw------- 1 mark mark 203627562 Oct 10 10:01 HITS.46676269._013442.pool.root.1
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark       529 Oct 10 10:01 boinc_task_state.xml
[2025-10-10 10:02:51] -rw------- 1 mark mark      1033 Oct 10 10:02 memory_monitor_summary.json
[2025-10-10 10:02:51] -rw------- 1 mark mark    369111 Oct 10 10:02 log.46676269._013442.job.log.tgz.1
[2025-10-10 10:02:51] -rw------- 1 mark mark      7787 Oct 10 10:02 heartbeat.json
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark      8192 Oct 10 10:02 boinc_mmap_file
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark        27 Oct 10 10:02 wrapper_checkpoint.txt
[2025-10-10 10:02:51] -rw------- 1 mark mark        95 Oct 10 10:02 pilot_heartbeat.json
[2025-10-10 10:02:51] -rw------- 1 mark mark      4904 Oct 10 10:02 pilotlog.txt
[2025-10-10 10:02:51] -rw------- 1 mark mark    473231 Oct 10 10:02 log.46676269._013442.job.log.1
[2025-10-10 10:02:51] -rw------- 1 mark mark       357 Oct 10 10:02 output.list
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark       620 Oct 10 10:02 runtime_log
[2025-10-10 10:02:51] -rw------- 1 mark mark    860160 Oct 10 10:02 result.tar.gz
[2025-10-10 10:02:51] -rw------- 1 mark mark       645 Oct 10 10:02 YhBNDmkI3Q8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIFZNDmtx89km.diag
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark      8759 Oct 10 10:02 runtime_log.err
[2025-10-10 10:02:51] -rw-rw-r-- 1 mark mark     21966 Oct 10 10:02 stderr.txt
[2025-10-10 10:02:51] HITS file was successfully produced:
[2025-10-10 10:02:51] -rw------- 1 mark mark 203627562 Oct 10 10:01 shared/HITS.pool.root.1
[2025-10-10 10:02:51]  *** Contents of shared directory: ***
[2025-10-10 10:02:51] total 415956
[2025-10-10 10:02:51] -rw-r--r-- 2 mark mark 220852179 Oct 10 09:10 ATLAS.root_0
[2025-10-10 10:02:51] -rw-r--r-- 2 mark mark     15120 Oct 10 09:10 start_atlas.sh
[2025-10-10 10:02:51] -rw-r--r-- 2 mark mark    569683 Oct 10 09:10 input.tar.gz
[2025-10-10 10:02:51] -rw------- 1 mark mark 203627562 Oct 10 10:01 HITS.pool.root.1
[2025-10-10 10:02:51] -rw------- 1 mark mark    860160 Oct 10 10:02 result.tar.gz
10:02:52 (3286797): run_atlas exited; CPU time 32881.152339
10:02:52 (3286797): called boinc_finish(0)

</stderr_txt>
]]>

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