Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:39:04 (26808): wrapper (7.7.26015): starting
02:39:04 (26808): wrapper: running run_atlas (--nthreads 9)
[2025-10-10 02:39:04] Arguments: --nthreads 9
[2025-10-10 02:39:04] Threads: 9
[2025-10-10 02:39:04] Checking for CVMFS
[2025-10-10 02:39:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 02:39:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 02:39:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 02:39:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 02:39:05] 2.13.2.0 4167112 126031 470428 151537 1 539 21084083 32935937 28785 16776704 0 438754520 99.672 365925678 17106 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 02:39:05] CVMFS is ok
[2025-10-10 02:39:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 02:39:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 02:39:05] Further information can be found at the LHC@home message board.
[2025-10-10 02:39:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 02:39:05] Checking for apptainer binary...
[2025-10-10 02:39:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 02:39:05] Running /usr/bin/apptainer --version
[2025-10-10 02:39:05] apptainer version 1.4.3-1.el9
[2025-10-10 02:39:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 02:39:06] c7-16-8.aglt2.org
[2025-10-10 02:39:06] apptainer works
[2025-10-10 02:39:06] Set ATHENA_PROC_NUMBER=9
[2025-10-10 02:39:06] Set ATHENA_CORE_NUMBER=9
[2025-10-10 02:39:06] Starting ATLAS job with PandaID=6837358808
[2025-10-10 02:39:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:10:29 (867507): wrapper (7.7.26015): starting
05:10:29 (867507): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 05:10:29] Arguments: --nthreads 8
[2025-10-10 05:10:29] Threads: 8
[2025-10-10 05:10:29] This job has been restarted, cleaning up previous attempt
[2025-10-10 05:10:29] Checking for CVMFS
[2025-10-10 05:10:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 05:10:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 05:10:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 05:10:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 05:10:30] 2.13.2.0 4167112 126183 486160 151539 2 848 23077635 32935936 27819 16776704 0 439900618 99.673 366468161 17101 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 05:10:30] CVMFS is ok
[2025-10-10 05:10:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 05:10:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 05:10:30] Further information can be found at the LHC@home message board.
[2025-10-10 05:10:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 05:10:30] Checking for apptainer binary...
[2025-10-10 05:10:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 05:10:30] Running /usr/bin/apptainer --version
[2025-10-10 05:10:30] apptainer version 1.4.3-1.el9
[2025-10-10 05:10:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 05:10:30] c7-16-8.aglt2.org
[2025-10-10 05:10:30] apptainer works
[2025-10-10 05:10:30] Set ATHENA_PROC_NUMBER=8
[2025-10-10 05:10:30] Set ATHENA_CORE_NUMBER=8
[2025-10-10 05:10:30] Starting ATLAS job with PandaID=6837358808
[2025-10-10 05:10:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 09:15:16]  *** The last 200 lines of the pilot log: ***
[2025-10-10 09:15:16] 2025-10-10 13:14:36,211 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 09:15:16] 2025-10-10 13:14:36,234 | INFO     | fitting pss+swap vs Time
[2025-10-10 09:15:16] 2025-10-10 13:14:36,258 | INFO     | sum of square deviations: 4233093426.4937124
[2025-10-10 09:15:16] 2025-10-10 13:14:36,259 | INFO     | sum of deviations: -29476529899.45607
[2025-10-10 09:15:16] 2025-10-10 13:14:36,259 | INFO     | mean x: 1760094738.046025
[2025-10-10 09:15:16] 2025-10-10 13:14:36,259 | INFO     | mean y: 2252937.6778242677
[2025-10-10 09:15:16] 2025-10-10 13:14:36,260 | INFO     | -- intersect: 12258416443.821507
[2025-10-10 09:15:16] 2025-10-10 13:14:36,260 | INFO     | intersect: 12258416443.821507
[2025-10-10 09:15:16] 2025-10-10 13:14:36,260 | INFO     | chi2: 4.622610871064334
[2025-10-10 09:15:16] 2025-10-10 13:14:36,260 | INFO     | sum of square deviations: 3972933763.9829106
[2025-10-10 09:15:16] 2025-10-10 13:14:36,280 | INFO     | sum of deviations: 29761343293.23932
[2025-10-10 09:15:16] 2025-10-10 13:14:36,280 | INFO     | mean x: 1760094585.5470085
[2025-10-10 09:15:16] 2025-10-10 13:14:36,281 | INFO     | mean y: 2287525.841880342
[2025-10-10 09:15:16] 2025-10-10 13:14:36,281 | INFO     | -- intersect: -13182623751.541706
[2025-10-10 09:15:16] 2025-10-10 13:14:36,281 | INFO     | intersect: -13182623751.541706
[2025-10-10 09:15:16] 2025-10-10 13:14:36,281 | INFO     | chi2: 1.253926724139093
[2025-10-10 09:15:16] 2025-10-10 13:14:36,281 | INFO     | current chi2=1.253926724139093 (change=72.87405842468453 %)
[2025-10-10 09:15:16] 2025-10-10 13:14:36,282 | INFO     | sum of square deviations: 3723658026.471628
[2025-10-10 09:15:16] 2025-10-10 13:14:36,309 | INFO     | sum of deviations: 28678142178.720528
[2025-10-10 09:15:16] 2025-10-10 13:14:36,310 | INFO     | mean x: 1760094433.048035
[2025-10-10 09:15:16] 2025-10-10 13:14:36,310 | INFO     | mean y: 2286864.9344978165
[2025-10-10 09:15:16] 2025-10-10 13:14:36,310 | INFO     | -- intersect: -13553264702.929287
[2025-10-10 09:15:16] 2025-10-10 13:14:36,310 | INFO     | intersect: -13553264702.929287
[2025-10-10 09:15:16] 2025-10-10 13:14:36,310 | INFO     | chi2: 1.25422397999322
[2025-10-10 09:15:16] 2025-10-10 13:14:36,310 | INFO     | current chi2=1.25422397999322 (change=-0.023705998795988198 %)
[2025-10-10 09:15:16] 2025-10-10 13:14:36,310 | INFO     | right removable region: 228
[2025-10-10 09:15:16] 2025-10-10 13:14:36,311 | INFO     | sum of square deviations: 3972927053.9829106
[2025-10-10 09:15:16] 2025-10-10 13:14:36,312 | INFO     | sum of deviations: -58491829076.76069
[2025-10-10 09:15:16] 2025-10-10 13:14:36,312 | INFO     | mean x: 1760094890.5470085
[2025-10-10 09:15:16] 2025-10-10 13:14:36,312 | INFO     | mean y: 2269777.841880342
[2025-10-10 09:15:16] 2025-10-10 13:14:36,312 | INFO     | -- intersect: 25915448675.38684
[2025-10-10 09:15:16] 2025-10-10 13:14:36,312 | INFO     | intersect: 25915448675.38684
[2025-10-10 09:15:16] 2025-10-10 13:14:36,329 | INFO     | chi2: 3.4493559542325825
[2025-10-10 09:15:16] 2025-10-10 13:14:36,329 | INFO     | current chi2=3.4493559542325825 (change=25.38078478930275 %)
[2025-10-10 09:15:16] 2025-10-10 13:14:36,330 | INFO     | sum of square deviations: 3723644606.471628
[2025-10-10 09:15:16] 2025-10-10 13:14:36,331 | INFO     | sum of deviations: -59075677357.96507
[2025-10-10 09:15:16] 2025-10-10 13:14:36,331 | INFO     | mean x: 1760095043.048035
[2025-10-10 09:15:16] 2025-10-10 13:14:36,331 | INFO     | mean y: 2270131.6331877727
[2025-10-10 09:15:16] 2025-10-10 13:14:36,331 | INFO     | -- intersect: 27926204306.700817
[2025-10-10 09:15:16] 2025-10-10 13:14:36,331 | INFO     | intersect: 27926204306.700817
[2025-10-10 09:15:16] 2025-10-10 13:14:36,332 | INFO     | chi2: 3.449579535677281
[2025-10-10 09:15:16] 2025-10-10 13:14:36,332 | INFO     | current chi2=3.449579535677281 (change=-0.006481831613358028 %)
[2025-10-10 09:15:16] 2025-10-10 13:14:36,332 | INFO     | left removable region: 20
[2025-10-10 09:15:16] 2025-10-10 13:14:36,332 | INFO     | sum of square deviations: 2790290071.5192437
[2025-10-10 09:15:16] 2025-10-10 13:14:36,351 | INFO     | sum of deviations: -3695101165.2596145
[2025-10-10 09:15:16] 2025-10-10 13:14:36,352 | INFO     | mean x: 1760095012.5480769
[2025-10-10 09:15:16] 2025-10-10 13:14:36,352 | INFO     | mean y: 2307362.9759615385
[2025-10-10 09:15:16] 2025-10-10 13:14:36,352 | INFO     | -- intersect: 2333150739.5188584
[2025-10-10 09:15:16] 2025-10-10 13:14:36,352 | INFO     | intersect: 2333150739.5188584
[2025-10-10 09:15:16] 2025-10-10 13:14:36,352 | INFO     | chi2: 0.015051829972721097
[2025-10-10 09:15:16] 2025-10-10 13:14:36,352 | INFO     | -- intersect: 2333150739.5188584
[2025-10-10 09:15:16] 2025-10-10 13:14:36,352 | INFO     | current memory leak: -1.32 B/s (using 208 data points, chi2=0.02)
[2025-10-10 09:15:16] 2025-10-10 13:14:36,353 | INFO     | could have reported an average CPU frequency of 3103 MHz (12 samples)
[2025-10-10 09:15:16] 2025-10-10 13:14:36,353 | INFO     | ..............................
[2025-10-10 09:15:16] 2025-10-10 13:14:36,353 | INFO     | . Timing measurements:
[2025-10-10 09:15:16] 2025-10-10 13:14:36,353 | INFO     | . get job = 0 s
[2025-10-10 09:15:16] 2025-10-10 13:14:36,353 | INFO     | . initial setup = 1 s
[2025-10-10 09:15:16] 2025-10-10 13:14:36,353 | INFO     | . payload setup = 8 s
[2025-10-10 09:15:16] 2025-10-10 13:14:36,353 | INFO     | . stage-in = 0 s
[2025-10-10 09:15:16] 2025-10-10 13:14:36,354 | INFO     | . payload execution = 14576 s
[2025-10-10 09:15:16] 2025-10-10 13:14:36,354 | INFO     | . stage-out = 6 s
[2025-10-10 09:15:16] 2025-10-10 13:14:36,354 | INFO     | . log creation = 0 s
[2025-10-10 09:15:16] 2025-10-10 13:14:36,354 | INFO     | ..............................
[2025-10-10 09:15:16] 2025-10-10 13:14:36,926 | INFO     | 
[2025-10-10 09:15:16] 2025-10-10 13:14:36,926 | INFO     | job summary report
[2025-10-10 09:15:16] 2025-10-10 13:14:36,926 | INFO     | --------------------------------------------------
[2025-10-10 09:15:16] 2025-10-10 13:14:36,926 | INFO     | PanDA job id: 6837358808
[2025-10-10 09:15:16] 2025-10-10 13:14:36,926 | INFO     | task id: 46676269
[2025-10-10 09:15:16] 2025-10-10 13:14:36,926 | INFO     | errors: (none)
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | pilot state: finished 
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | transexitcode: 0
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | exeerrorcode: 0
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | exeerrordiag: 
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | exitcode: 0
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | exitmsg: OK
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | cpuconsumptiontime: 33874 s
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | nevents: 400
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | neventsw: 0
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | pid: 931865
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | pgrp: 931865
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | corecount: 8
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | event service: False
[2025-10-10 09:15:16] 2025-10-10 13:14:36,927 | INFO     | sizes: {0: 2348854, 6: 2349116, 11: 2349144, 14591: 2380023, 14600: 2389049, 14602: 2389105, 14616: 2389257}
[2025-10-10 09:15:16] 2025-10-10 13:14:36,928 | INFO     | --------------------------------------------------
[2025-10-10 09:15:16] 2025-10-10 13:14:36,928 | INFO     | 
[2025-10-10 09:15:16] 2025-10-10 13:14:36,928 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 09:15:16] 2025-10-10 13:14:37,002 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,003 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,003 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,003 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,003 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,003 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,003 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,003 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 09:15:16] 2025-10-10 13:14:37,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,005 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 09:15:16] 2025-10-10 13:14:37,005 | INFO     | job 6837358808 has completed (purged errors)
[2025-10-10 09:15:16] 2025-10-10 13:14:37,005 | INFO     | overall cleanup function is called
[2025-10-10 09:15:16] 2025-10-10 13:14:38,018 | INFO     | --- collectZombieJob: --- 10, [931865]
[2025-10-10 09:15:16] 2025-10-10 13:14:38,036 | INFO     | zombie collector waiting for pid 931865
[2025-10-10 09:15:16] 2025-10-10 13:14:38,036 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 09:15:16] 2025-10-10 13:14:38,036 | INFO     | collected zombie processes
[2025-10-10 09:15:16] 2025-10-10 13:14:38,036 | INFO     | will attempt to kill all subprocesses of pid=931865
[2025-10-10 09:15:16] 2025-10-10 13:14:42,299 | INFO     | process IDs to be killed: [931865] (in reverse order)
[2025-10-10 09:15:16] 2025-10-10 13:14:43,206 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 09:15:16] 2025-10-10 13:14:43,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 09:15:16] 2025-10-10 13:14:43,369 | INFO     | did not find any defunct processes belonging to 931865
[2025-10-10 09:15:16] 2025-10-10 13:14:43,533 | INFO     | did not find any defunct processes belonging to 931865
[2025-10-10 09:15:16] 2025-10-10 13:14:43,533 | INFO     | ready for new job
[2025-10-10 09:15:16] 2025-10-10 13:14:43,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 09:15:16] 2025-10-10 13:14:43,536 | INFO     | ***************************************
[2025-10-10 09:15:16] 2025-10-10 13:14:43,558 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 09:15:16] 2025-10-10 13:14:43,558 | INFO     | ***************************************
[2025-10-10 09:15:16] 2025-10-10 13:14:43,558 | INFO     | 
[2025-10-10 09:15:16] 2025-10-10 13:14:43,596 | INFO     | architecture information:
[2025-10-10 09:15:16] 2025-10-10 13:14:43,606 | INFO     | executing command: cat /etc/os-release
[2025-10-10 09:15:16] 2025-10-10 13:14:43,694 | INFO     | cat /etc/os-release:
[2025-10-10 09:15:16] NAME="CentOS Linux"
[2025-10-10 09:15:16] VERSION="7 (Core)"
[2025-10-10 09:15:16] ID="centos"
[2025-10-10 09:15:16] ID_LIKE="rhel fedora"
[2025-10-10 09:15:16] VERSION_ID="7"
[2025-10-10 09:15:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 09:15:16] ANSI_COLOR="0;31"
[2025-10-10 09:15:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 09:15:16] HOME_URL="https://www.centos.org/"
[2025-10-10 09:15:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 09:15:16] 
[2025-10-10 09:15:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 09:15:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 09:15:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 09:15:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 09:15:16] 
[2025-10-10 09:15:16] 2025-10-10 13:14:43,695 | INFO     | ***************************************
[2025-10-10 09:15:16] 2025-10-10 13:14:44,198 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 09:15:16] 2025-10-10 13:14:44,337 | INFO     | sufficient remaining disk space (73765224448 B)
[2025-10-10 09:15:16] 2025-10-10 13:14:44,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 09:15:16] 2025-10-10 13:14:44,338 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 09:15:16] 2025-10-10 13:14:44,338 | INFO     | update_server=False
[2025-10-10 09:15:16] 2025-10-10 13:14:44,338 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 09:15:16] 2025-10-10 13:14:44,389 | INFO     | all data control threads have been joined
[2025-10-10 09:15:16] 2025-10-10 13:14:44,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 09:15:16] 2025-10-10 13:14:44,499 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 09:15:16] 2025-10-10 13:14:44,499 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 09:15:16] 2025-10-10 13:14:44,499 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 09:15:16] 2025-10-10 13:14:44,500 | INFO     | will abort loop
[2025-10-10 09:15:16] 2025-10-10 13:14:44,749 | INFO     | all payload control threads have been joined
[2025-10-10 09:15:16] 2025-10-10 13:14:45,153 | INFO     | all job control threads have been joined
[2025-10-10 09:15:16] 2025-10-10 13:14:45,350 | INFO     | [payload] validate_post thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:45,357 | INFO     | [job] retrieve thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:45,396 | INFO     | [data] control thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:45,396 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:45,505 | INFO     | [job] job monitor thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:45,519 | INFO     | [payload] failed_post thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:45,755 | INFO     | [payload] control thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:46,018 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 09:15:16] 2025-10-10 13:14:46,159 | INFO     | [job] control thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:46,253 | INFO     | [data] copytool_in thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:46,412 | INFO     | [data] copytool_out thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:46,689 | INFO     | [job] validate thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:46,709 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:46,752 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:46,755 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:47,024 | INFO     | [job] queue monitor thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:14:47,410 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 09:15:16] 2025-10-10 13:14:51,422 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 09:15:16] 2025-10-10 13:15:09,366 | INFO     | [monitor] cgroup control has ended
[2025-10-10 09:15:16] 2025-10-10 13:15:10,159 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799522252608)>', '<ExcThread(monitor, started 139798895388416)>']
[2025-10-10 09:15:16] 2025-10-10 13:15:12,063 | INFO     | PID=886439 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 09:15:16] 2025-10-10 13:15:12,063 | INFO     | .. there are 40 such processes running
[2025-10-10 09:15:16] 2025-10-10 13:15:12,063 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 09:15:16] 2025-10-10 13:15:12,063 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 09:15:16] 2025-10-10 13:15:12,064 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 09:15:16] 2025-10-10 13:15:12,064 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 09:15:16] 2025-10-10 13:15:12,064 | INFO     | [monitor] control thread has ended
[2025-10-10 09:15:16] 2025-10-10 13:15:15,220 | INFO     | all workflow threads have been joined
[2025-10-10 09:15:16] 2025-10-10 13:15:15,220 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 09:15:16] 2025-10-10 13:15:15,220 | INFO     | traces error code: 0
[2025-10-10 09:15:16] 2025-10-10 13:15:15,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 09:15:16] 2025-10-10 13:15:16,208 [wrapper] ==== pilot stdout END ====
[2025-10-10 09:15:16] 2025-10-10 13:15:16,217 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 09:15:16] 2025-10-10 13:15:16,220 [wrapper] pilotpid: 886439
[2025-10-10 09:15:16] 2025-10-10 13:15:16,222 [wrapper] Pilot exit status: 0
[2025-10-10 09:15:16] 2025-10-10 13:15:16,243 [wrapper] pandaids: 6837358808 6837358808
[2025-10-10 09:15:16] 2025-10-10 13:15:16,367 [wrapper] cleanup supervisor_pilot 2105031 886440
[2025-10-10 09:15:16] 2025-10-10 13:15:16,370 [wrapper] Test setup, not cleaning
[2025-10-10 09:15:16] 2025-10-10 13:15:16,387 [wrapper] apfmon messages muted
[2025-10-10 09:15:16] 2025-10-10 13:15:16,397 [wrapper] ==== wrapper stdout END ====
[2025-10-10 09:15:16] 2025-10-10 13:15:16,404 [wrapper] ==== wrapper stderr END ====
[2025-10-10 09:15:16]  *** Error codes and diagnostics ***
[2025-10-10 09:15:16]     "exeErrorCode": 0,
[2025-10-10 09:15:16]     "exeErrorDiag": "",
[2025-10-10 09:15:16]     "pilotErrorCode": 0,
[2025-10-10 09:15:16]     "pilotErrorDiag": "",
[2025-10-10 09:15:16]  *** Listing of results directory ***
[2025-10-10 09:15:16] total 628576
[2025-10-10 09:15:16] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 14:29 pilot3.tar.gz
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 14:52 queuedata.json
[2025-10-10 09:15:16] -rwx------. 1 boincer umatlas     36292 Oct  9 14:53 runpilot2-wrapper.sh
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas       100 Oct 10 02:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 09:15:16] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 02:39 run_atlas
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas       105 Oct 10 02:39 job.xml
[2025-10-10 09:15:16] -rw-r--r--. 3 boincer umatlas 221344461 Oct 10 02:39 EVNT.46676267._001011.pool.root.1
[2025-10-10 09:15:16] -rw-r--r--. 3 boincer umatlas 221344461 Oct 10 02:39 ATLAS.root_0
[2025-10-10 09:15:16] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 02:39 start_atlas.sh
[2025-10-10 09:15:16] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 02:39 shared
[2025-10-10 09:15:16] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 02:39 input.tar.gz
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas         0 Oct 10 02:39 boinc_lockfile
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas      2548 Oct 10 05:10 pandaJob.out
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas    975462 Oct 10 05:10 agis_schedconf.cvmfs.json
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas 192632902 Oct 10 09:09 HITS.46676269._024596.pool.root.1
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas       531 Oct 10 09:09 boinc_task_state.xml
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas      6935 Oct 10 09:11 init_data.xml
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas      1052 Oct 10 09:14 memory_monitor_summary.json
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas   1560580 Oct 10 09:14 agis_ddmendpoints.agis.ALL.json
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas    456936 Oct 10 09:14 log.46676269._024596.job.log.tgz.1
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas        96 Oct 10 09:14 pilot_heartbeat.json
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas      7804 Oct 10 09:14 heartbeat.json
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 09:15 boinc_mmap_file
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas      5009 Oct 10 09:15 pilotlog.txt
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas        28 Oct 10 09:15 wrapper_checkpoint.txt
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas   1754492 Oct 10 09:15 log.46676269._024596.job.log.1
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas       357 Oct 10 09:15 output.list
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas       620 Oct 10 09:15 runtime_log
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas   2232320 Oct 10 09:15 result.tar.gz
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas       784 Oct 10 09:15 wrJKDmkwAR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmP5aNDmTLN9mn.diag
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas      8784 Oct 10 09:15 runtime_log.err
[2025-10-10 09:15:16] -rw-r--r--. 1 boincer umatlas     22918 Oct 10 09:15 stderr.txt
[2025-10-10 09:15:16] HITS file was successfully produced:
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas 192632902 Oct 10 09:09 shared/HITS.pool.root.1
[2025-10-10 09:15:16]  *** Contents of shared directory: ***
[2025-10-10 09:15:16] total 407044
[2025-10-10 09:15:16] -rw-r--r--. 3 boincer umatlas 221344461 Oct 10 02:39 ATLAS.root_0
[2025-10-10 09:15:16] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 02:39 start_atlas.sh
[2025-10-10 09:15:16] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 02:39 input.tar.gz
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas 192632902 Oct 10 09:09 HITS.pool.root.1
[2025-10-10 09:15:16] -rw-------. 1 boincer umatlas   2232320 Oct 10 09:15 result.tar.gz
09:15:18 (867507): run_atlas exited; CPU time 34433.553213
09:15:18 (867507): called boinc_finish(0)

</stderr_txt>
]]>

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