Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:41:27 (3467403): wrapper (7.7.26015): starting
12:41:27 (3467403): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 12:41:27] Arguments: --nthreads 12
[2025-10-10 12:41:27] Threads: 12
[2025-10-10 12:41:27] Checking for CVMFS
[2025-10-10 12:41:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 12:41:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 12:41:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 12:41:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 12:41:27] 2.13.1.0 2960586 1127 70296 151543 2 57 2855668 4097025 0 130560 0 1319346 99.993 38439 7785 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-10 12:41:27] CVMFS is ok
[2025-10-10 12:41:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 12:41:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 12:41:27] Further information can be found at the LHC@home message board.
[2025-10-10 12:41:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 12:41:27] Checking for apptainer binary...
[2025-10-10 12:41:27] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-10 12:41:27] apptainer is not installed, using version from CVMFS
[2025-10-10 12:41:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 12:41:27] pckelar6.cern.ch
[2025-10-10 12:41:27] apptainer works
[2025-10-10 12:41:27] Set ATHENA_PROC_NUMBER=12
[2025-10-10 12:41:27] Set ATHENA_CORE_NUMBER=12
[2025-10-10 12:41:27] Starting ATLAS job with PandaID=6837344874
[2025-10-10 12:41:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 13:50:47]  *** The last 200 lines of the pilot log: ***
[2025-10-10 13:50:47]  replicas=None
[2025-10-10 13:50:47]  scope=mc23_13p6TeV
[2025-10-10 13:50:47]  status=None
[2025-10-10 13:50:47]  status_code=0
[2025-10-10 13:50:47]  storage_token=
[2025-10-10 13:50:47]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6837344874/log.46676269._019329.job.log.tgz.1
[2025-10-10 13:50:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/3a/log.46676269._019329.job.log.tgz.1
[2025-10-10 13:50:47]  workdir=None
[2025-10-10 13:50:47] ]
[2025-10-10 13:50:47] 2025-10-10 11:49:48,081 | INFO     | transferring file log.46676269._019329.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6837344874/log.46676269._019329.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-10 13:50:47] 2025-10-10 11:49:48,081 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6837344874/log.46676269._019329.job.log.tgz.1 /var/lib/boinc/slots/1/log.46676269._019329.job
[2025-10-10 13:50:47] 2025-10-10 11:49:48,096 | INFO     | adding to output.list: log.46676269._019329.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/3a/log.46676269._019329.job.log.tg
[2025-10-10 13:50:47] 2025-10-10 11:49:48,097 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 13:50:47] 2025-10-10 11:49:48,097 | INFO     | summary of transferred files:
[2025-10-10 13:50:47] 2025-10-10 11:49:48,097 | INFO     |  -- lfn=log.46676269._019329.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 13:50:47] 2025-10-10 11:49:48,097 | INFO     | stage-out finished correctly
[2025-10-10 13:50:47] 2025-10-10 11:49:49,045 | INFO     | time since job start (4095s) is within the limit (172800.0s)
[2025-10-10 13:50:47] 2025-10-10 11:49:49,198 | INFO     | monitor loop #306: job 0:6837344874 is in state 'finished'
[2025-10-10 13:50:47] 2025-10-10 11:49:49,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 13:50:47] 2025-10-10 11:49:50,302 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 13:50:47] 2025-10-10 11:49:51,051 | INFO     | time since job start (4097s) is within the limit (172800.0s)
[2025-10-10 13:50:47] 2025-10-10 11:49:51,158 | INFO     | job 6837344874 has state=finished
[2025-10-10 13:50:47] 2025-10-10 11:49:51,158 | INFO     | preparing for final server update for job 6837344874 in state='finished'
[2025-10-10 13:50:47] 2025-10-10 11:49:51,159 | INFO     | this job has now completed (state=finished)
[2025-10-10 13:50:47] 2025-10-10 11:49:51,159 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 13:50:47] 2025-10-10 11:49:51,159 | INFO     | log transfer has been attempted: DONE
[2025-10-10 13:50:47] 2025-10-10 11:49:51,159 | INFO     | job 6837344874 has finished - writing final server update
[2025-10-10 13:50:47] 2025-10-10 11:49:51,159 | INFO     | total number of processed events: 400 (read)
[2025-10-10 13:50:47] 2025-10-10 11:49:51,162 | INFO     | executing command: lscpu
[2025-10-10 13:50:47] 2025-10-10 11:49:51,186 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 13:50:47] 2025-10-10 11:49:51,701 | INFO     | monitor loop #307: job 0:6837344874 is in state 'finished'
[2025-10-10 13:50:47] 2025-10-10 11:49:51,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 13:50:47] 2025-10-10 11:49:53,056 | INFO     | time since job start (4099s) is within the limit (172800.0s)
[2025-10-10 13:50:47] 2025-10-10 11:49:54,204 | INFO     | monitor loop #308: job 0:6837344874 is in state 'finished'
[2025-10-10 13:50:47] 2025-10-10 11:49:54,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 13:50:47] 2025-10-10 11:49:55,061 | INFO     | time since job start (4101s) is within the limit (172800.0s)
[2025-10-10 13:50:47] 2025-10-10 11:49:55,938 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-10 13:50:47] 2025-10-10 11:49:55,940 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2689.6295
[2025-10-10 13:50:47] 2025-10-10 11:49:55,941 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6837344874/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 13:50:47] 2025-10-10 11:49:55,942 | INFO     | extracted standard info from prmon json
[2025-10-10 13:50:47] 2025-10-10 11:49:55,942 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 13:50:47] 2025-10-10 11:49:55,942 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 13:50:47] 2025-10-10 11:49:55,943 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 13:50:47] 2025-10-10 11:49:55,943 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 13:50:47] 2025-10-10 11:49:55,944 | INFO     | fitting pss+swap vs Time
[2025-10-10 13:50:47] 2025-10-10 11:49:55,944 | INFO     | sum of square deviations: 66959395.0
[2025-10-10 13:50:47] 2025-10-10 11:49:55,945 | INFO     | sum of deviations: -6548999680.500001
[2025-10-10 13:50:47] 2025-10-10 11:49:55,945 | INFO     | mean x: 1760095022.5
[2025-10-10 13:50:47] 2025-10-10 11:49:55,945 | INFO     | mean y: 3078749.3833333333
[2025-10-10 13:50:47] 2025-10-10 11:49:55,945 | INFO     | -- intersect: 172150120101.8648
[2025-10-10 13:50:47] 2025-10-10 11:49:55,945 | INFO     | intersect: 172150120101.8648
[2025-10-10 13:50:47] 2025-10-10 11:49:55,945 | INFO     | chi2: 0.11186472609210876
[2025-10-10 13:50:47] 2025-10-10 11:49:55,945 | INFO     | -- intersect: 172150120101.8648
[2025-10-10 13:50:47] 2025-10-10 11:49:55,945 | INFO     | current memory leak: -97.81 B/s (using 60 data points, chi2=0.11)
[2025-10-10 13:50:47] 2025-10-10 11:49:55,946 | INFO     | could have reported an average CPU frequency of 2576 MHz (6 samples)
[2025-10-10 13:50:47] 2025-10-10 11:49:55,946 | INFO     | ..............................
[2025-10-10 13:50:47] 2025-10-10 11:49:55,946 | INFO     | . Timing measurements:
[2025-10-10 13:50:47] 2025-10-10 11:49:55,946 | INFO     | . get job = 0 s
[2025-10-10 13:50:47] 2025-10-10 11:49:55,946 | INFO     | . initial setup = 1 s
[2025-10-10 13:50:47] 2025-10-10 11:49:55,946 | INFO     | . payload setup = 6 s
[2025-10-10 13:50:47] 2025-10-10 11:49:55,946 | INFO     | . stage-in = 0 s
[2025-10-10 13:50:47] 2025-10-10 11:49:55,946 | INFO     | . payload execution = 4068 s
[2025-10-10 13:50:47] 2025-10-10 11:49:55,946 | INFO     | . stage-out = 0 s
[2025-10-10 13:50:47] 2025-10-10 11:49:55,947 | INFO     | . log creation = 0 s
[2025-10-10 13:50:47] 2025-10-10 11:49:55,947 | INFO     | ..............................
[2025-10-10 13:50:47] 2025-10-10 11:49:56,014 | INFO     | 
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | job summary report
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | --------------------------------------------------
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | PanDA job id: 6837344874
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | task id: 46676269
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | errors: (none)
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | pilot state: finished 
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | transexitcode: 0
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | exeerrorcode: 0
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | exeerrordiag: 
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | exitcode: 0
[2025-10-10 13:50:47] 2025-10-10 11:49:56,015 | INFO     | exitmsg: OK
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | cpuconsumptiontime: 43636 s
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | nevents: 400
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | neventsw: 0
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | pid: 3478482
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | pgrp: 3478482
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | corecount: 12
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | event service: False
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | sizes: {0: 2348622, 1: 2348877, 4: 2349139, 12: 2349167, 4078: 2375110, 4079: 2384108, 4081: 2384292, 4087: 2384486}
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | --------------------------------------------------
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | 
[2025-10-10 13:50:47] 2025-10-10 11:49:56,016 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-10-10 13:50:47] 2025-10-10 11:49:56,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,033 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,033 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,033 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,033 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,033 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,033 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,034 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 13:50:47] 2025-10-10 11:49:56,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 13:50:47] 2025-10-10 11:49:56,035 | INFO     | job 6837344874 has completed (purged errors)
[2025-10-10 13:50:47] 2025-10-10 11:49:56,035 | INFO     | overall cleanup function is called
[2025-10-10 13:50:47] 2025-10-10 11:49:56,172 | INFO     | PID=3471161 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 13:50:47] 2025-10-10 11:49:57,042 | INFO     | --- collectZombieJob: --- 10, [3478482]
[2025-10-10 13:50:47] 2025-10-10 11:49:57,042 | INFO     | zombie collector waiting for pid 3478482
[2025-10-10 13:50:47] 2025-10-10 11:49:57,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 13:50:47] 2025-10-10 11:49:57,042 | INFO     | collected zombie processes
[2025-10-10 13:50:47] 2025-10-10 11:49:57,042 | INFO     | will attempt to kill all subprocesses of pid=3478482
[2025-10-10 13:50:47] 2025-10-10 11:49:57,121 | INFO     | process IDs to be killed: [3478482] (in reverse order)
[2025-10-10 13:50:47] 2025-10-10 11:49:57,161 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 13:50:47] 2025-10-10 11:49:57,161 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 13:50:47] 2025-10-10 11:49:57,164 | INFO     | did not find any defunct processes belonging to 3478482
[2025-10-10 13:50:47] 2025-10-10 11:49:57,166 | INFO     | did not find any defunct processes belonging to 3478482
[2025-10-10 13:50:47] 2025-10-10 11:49:57,166 | INFO     | ready for new job
[2025-10-10 13:50:47] 2025-10-10 11:49:57,166 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 13:50:47] 2025-10-10 11:49:57,167 | INFO     | ***************************************
[2025-10-10 13:50:47] 2025-10-10 11:49:57,167 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 13:50:47] 2025-10-10 11:49:57,168 | INFO     | ***************************************
[2025-10-10 13:50:47] 2025-10-10 11:49:57,168 | INFO     | 
[2025-10-10 13:50:47] 2025-10-10 11:49:57,168 | INFO     | architecture information:
[2025-10-10 13:50:47] 2025-10-10 11:49:57,168 | INFO     | executing command: cat /etc/os-release
[2025-10-10 13:50:47] 2025-10-10 11:49:57,178 | INFO     | cat /etc/os-release:
[2025-10-10 13:50:47] NAME="CentOS Linux"
[2025-10-10 13:50:47] VERSION="7 (Core)"
[2025-10-10 13:50:47] ID="centos"
[2025-10-10 13:50:47] ID_LIKE="rhel fedora"
[2025-10-10 13:50:47] VERSION_ID="7"
[2025-10-10 13:50:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 13:50:47] ANSI_COLOR="0;31"
[2025-10-10 13:50:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 13:50:47] HOME_URL="https://www.centos.org/"
[2025-10-10 13:50:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 13:50:47] 
[2025-10-10 13:50:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 13:50:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 13:50:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 13:50:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 13:50:47] 
[2025-10-10 13:50:47] 2025-10-10 11:49:57,178 | INFO     | ***************************************
[2025-10-10 13:50:47] 2025-10-10 11:49:57,681 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-10-10 13:50:47] 2025-10-10 11:49:57,692 | INFO     | sufficient remaining disk space (870946177024 B)
[2025-10-10 13:50:47] 2025-10-10 11:49:57,692 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 13:50:47] 2025-10-10 11:49:57,693 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 13:50:47] 2025-10-10 11:49:57,693 | INFO     | update_server=False
[2025-10-10 13:50:47] 2025-10-10 11:49:57,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 13:50:47] 2025-10-10 11:49:57,693 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:50:47] 2025-10-10 11:49:57,712 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:50:47] 2025-10-10 11:49:57,712 | INFO     | aborting loop
[2025-10-10 13:50:47] 2025-10-10 11:49:57,799 | INFO     | all job control threads have been joined
[2025-10-10 13:50:47] 2025-10-10 11:49:57,855 | INFO     | all data control threads have been joined
[2025-10-10 13:50:47] 2025-10-10 11:49:58,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 13:50:47] 2025-10-10 11:49:58,698 | INFO     | [job] retrieve thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:58,698 | INFO     | [job] queue monitor thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:58,717 | INFO     | [job] job monitor thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:58,730 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:58,753 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:58,769 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:58,771 | INFO     | [job] validate thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:58,804 | INFO     | [job] control thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:58,860 | INFO     | [data] control thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:58,867 | INFO     | all payload control threads have been joined
[2025-10-10 13:50:47] 2025-10-10 11:49:59,121 | INFO     | [payload] failed_post thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:59,340 | INFO     | [data] copytool_in thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:59,363 | INFO     | [payload] validate_post thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:49:59,872 | INFO     | [payload] control thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:50:00,093 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:50:00,680 | INFO     | [data] copytool_out thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:50:00,873 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 13:50:47] 2025-10-10 11:50:04,879 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 13:50:47] 2025-10-10 11:50:28,344 | INFO     | PID=3471161 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 13:50:47] 2025-10-10 11:50:28,345 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 13:50:47] 2025-10-10 11:50:28,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 13:50:47] 2025-10-10 11:50:28,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 13:50:47] 2025-10-10 11:50:40,902 | INFO     | [monitor] cgroup control has ended
[2025-10-10 13:50:47] 2025-10-10 11:50:42,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045020145472)>', '<ExcThread(monitor, started 140044480259840)>']
[2025-10-10 13:50:47] 2025-10-10 11:50:42,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 13:50:47] 2025-10-10 11:50:42,417 | INFO     | [monitor] control thread has ended
[2025-10-10 13:50:47] 2025-10-10 11:50:47,029 | INFO     | all workflow threads have been joined
[2025-10-10 13:50:47] 2025-10-10 11:50:47,029 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 13:50:47] 2025-10-10 11:50:47,030 | INFO     | traces error code: 0
[2025-10-10 13:50:47] 2025-10-10 11:50:47,030 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 13:50:47] 2025-10-10 11:50:47,104 [wrapper] ==== pilot stdout END ====
[2025-10-10 13:50:47] 2025-10-10 11:50:47,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 13:50:47] 2025-10-10 11:50:47,110 [wrapper] pilotpid: 3471161
[2025-10-10 13:50:47] 2025-10-10 11:50:47,112 [wrapper] Pilot exit status: 0
[2025-10-10 13:50:47] 2025-10-10 11:50:47,121 [wrapper] pandaids: 6837344874
[2025-10-10 13:50:47] 2025-10-10 11:50:47,143 [wrapper] cleanup supervisor_pilot 3493040 3471162
[2025-10-10 13:50:47] 2025-10-10 11:50:47,145 [wrapper] Test setup, not cleaning
[2025-10-10 13:50:47] 2025-10-10 11:50:47,147 [wrapper] apfmon messages muted
[2025-10-10 13:50:47] 2025-10-10 11:50:47,149 [wrapper] ==== wrapper stdout END ====
[2025-10-10 13:50:47] 2025-10-10 11:50:47,151 [wrapper] ==== wrapper stderr END ====
[2025-10-10 13:50:47]  *** Error codes and diagnostics ***
[2025-10-10 13:50:47]     "exeErrorCode": 0,
[2025-10-10 13:50:47]     "exeErrorDiag": "",
[2025-10-10 13:50:47]     "pilotErrorCode": 0,
[2025-10-10 13:50:47]     "pilotErrorDiag": "",
[2025-10-10 13:50:47]  *** Listing of results directory ***
[2025-10-10 13:50:47] total 412568
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc    557409 Oct  9 15:37 pilot3.tar.gz
[2025-10-10 13:50:47] -rwx------. 1 boinc boinc     36292 Oct  9 15:51 runpilot2-wrapper.sh
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc      5112 Oct  9 15:51 queuedata.json
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc       100 Oct 10 12:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 13:50:47] -rwxr-xr-x. 1 boinc boinc      7986 Oct 10 12:41 run_atlas
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc       105 Oct 10 12:41 job.xml
[2025-10-10 13:50:47] -rw-r--r--. 2 boinc boinc 223470157 Oct 10 12:41 EVNT.46676267._000802.pool.root.1
[2025-10-10 13:50:47] -rw-r--r--. 2 boinc boinc     15120 Oct 10 12:41 start_atlas.sh
[2025-10-10 13:50:47] drwxrwx--x. 2 boinc boinc        68 Oct 10 12:41 shared
[2025-10-10 13:50:47] -rw-r--r--. 2 boinc boinc    569677 Oct 10 12:41 input.tar.gz
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc      6291 Oct 10 12:41 init_data.xml
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc         0 Oct 10 12:41 boinc_lockfile
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc      2546 Oct 10 12:41 pandaJob.out
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc    975528 Oct 10 12:41 agis_schedconf.cvmfs.json
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc   1560580 Oct 10 12:41 agis_ddmendpoints.agis.ALL.json
[2025-10-10 13:50:47] drwx------. 5 boinc boinc      4096 Oct 10 12:41 pilot3
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc 193181435 Oct 10 13:49 HITS.46676269._019329.pool.root.1
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc       529 Oct 10 13:49 boinc_task_state.xml
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc      1015 Oct 10 13:49 memory_monitor_summary.json
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc    361470 Oct 10 13:49 log.46676269._019329.job.log.tgz.1
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc      7774 Oct 10 13:49 heartbeat.json
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc        95 Oct 10 13:50 pilot_heartbeat.json
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc      8192 Oct 10 13:50 boinc_mmap_file
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc        27 Oct 10 13:50 wrapper_checkpoint.txt
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc      4749 Oct 10 13:50 pilotlog.txt
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc    600671 Oct 10 13:50 log.46676269._019329.job.log.1
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc       357 Oct 10 13:50 output.list
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc       620 Oct 10 13:50 runtime_log
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc    983040 Oct 10 13:50 result.tar.gz
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc      8727 Oct 10 13:50 runtime_log.err
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc       656 Oct 10 13:50 08MNDmmE6Q8n9Rq4apOajLDm4fhM0noT9bVof3QYDmF3NMDmDRZDsm.diag
[2025-10-10 13:50:47] -rw-r--r--. 1 boinc boinc     22072 Oct 10 13:50 stderr.txt
[2025-10-10 13:50:47] HITS file was successfully produced:
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc 193181435 Oct 10 13:49 shared/HITS.pool.root.1
[2025-10-10 13:50:47]  *** Contents of shared directory: ***
[2025-10-10 13:50:47] total 408428
[2025-10-10 13:50:47] -rw-r--r--. 2 boinc boinc 223470157 Oct 10 12:41 ATLAS.root_0
[2025-10-10 13:50:47] -rw-r--r--. 2 boinc boinc     15120 Oct 10 12:41 start_atlas.sh
[2025-10-10 13:50:47] -rw-r--r--. 2 boinc boinc    569677 Oct 10 12:41 input.tar.gz
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc 193181435 Oct 10 13:49 HITS.pool.root.1
[2025-10-10 13:50:47] -rw-------. 1 boinc boinc    983040 Oct 10 13:50 result.tar.gz
13:50:48 (3467403): run_atlas exited; CPU time 43659.906906
13:50:48 (3467403): called boinc_finish(0)

</stderr_txt>
]]>

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