Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:32:26 (2057548): wrapper (7.7.26015): starting
16:32:26 (2057548): wrapper: running run_atlas (--nthreads 3)
[2025-10-10 16:32:26] Arguments: --nthreads 3
[2025-10-10 16:32:26] Threads: 3
[2025-10-10 16:32:26] Checking for CVMFS
[2025-10-10 16:32:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 16:32:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 16:32:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 16:32:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 16:32:26] 2.9.2.0 1621947 1448 76896 151548 2 57 23347534 36864000 0 130560 0 1116682 99.990 47935 1014 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-10 16:32:26] CVMFS is ok
[2025-10-10 16:32:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 16:32:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 16:32:26] Further information can be found at the LHC@home message board.
[2025-10-10 16:32:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 16:32:26] Checking for apptainer binary...
[2025-10-10 16:32:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 16:32:26] Running /usr/bin/apptainer --version
[2025-10-10 16:32:26] apptainer version 1.4.1-1.1
[2025-10-10 16:32:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 16:32:26] thA305
[2025-10-10 16:32:26] apptainer works
[2025-10-10 16:32:26] Set ATHENA_PROC_NUMBER=3
[2025-10-10 16:32:26] Set ATHENA_CORE_NUMBER=3
[2025-10-10 16:32:26] Starting ATLAS job with PandaID=6837375639
[2025-10-10 16:32:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 16:42:39]  *** The last 200 lines of the pilot log: ***
[2025-10-10 16:42:39] 2025-10-10 14:42:05,136 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:05,257 | INFO     | [job] control thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:05,285 | INFO     | [data] copytool_in thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:05,403 | INFO     | [data] control thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:05,604 | INFO     | [payload] control thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:05,608 | INFO     | [payload] failed_post thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:05,825 | INFO     | [job] validate thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:05,865 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:05,950 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:05,978 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:06,496 | INFO     | [data] copytool_out thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:07,585 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 16:42:39] 2025-10-10 14:42:32,328 | INFO     | [monitor] cgroup control has ended
[2025-10-10 16:42:39] 2025-10-10 14:42:34,430 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140481479800640)>', '<ExcThread(monitor, started 140480838878976)>']
[2025-10-10 16:42:39] 2025-10-10 14:42:34,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 16:42:39] 2025-10-10 14:42:34,739 | INFO     | [monitor] control thread has ended
[2025-10-10 16:42:39] 2025-10-10 14:42:39,456 | INFO     | all workflow threads have been joined
[2025-10-10 16:42:39] 2025-10-10 14:42:39,456 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 16:42:39] 2025-10-10 14:42:39,456 | INFO     | traces error code: 0
[2025-10-10 16:42:39] 2025-10-10 14:42:39,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 16:42:39] 2025-10-10 14:42:39,507 [wrapper] ==== pilot stdout END ====
[2025-10-10 16:42:39] 2025-10-10 14:42:39,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 16:42:39] 2025-10-10 14:42:39,511 [wrapper] pilotpid: 2061267
[2025-10-10 16:42:39] 2025-10-10 14:42:39,514 [wrapper] Pilot exit status: 0
[2025-10-10 16:42:39] 2025-10-10 14:42:39,521 [wrapper] pandaids: 6837375639
[2025-10-10 16:42:39] 2025-10-10 14:42:39,537 [wrapper] cleanup supervisor_pilot 2061273 2061268
[2025-10-10 16:42:39] 2025-10-10 14:42:39,540 [wrapper] Test setup, not cleaning
[2025-10-10 16:42:39] 2025-10-10 14:42:39,542 [wrapper] apfmon messages muted
[2025-10-10 16:42:39] 2025-10-10 14:42:39,544 [wrapper] ==== wrapper stdout END ====
[2025-10-10 16:42:39] 2025-10-10 14:42:39,547 [wrapper] ==== wrapper stderr END ====
[2025-10-10 16:42:39]  *** Error codes and diagnostics ***
[2025-10-10 16:42:39]     "exeErrorCode": 65,
[2025-10-10 16:42:39]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-10 16:42:39]     "pilotErrorCode": 1305,
[2025-10-10 16:42:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-10-10 16:42:39]  *** Listing of results directory ***
[2025-10-10 16:42:39] total 221192
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc    557409 Oct 10 01:26 pilot3.tar.gz
[2025-10-10 16:42:39] -rwx------ 1 boinc boinc     36292 Oct 10 01:31 runpilot2-wrapper.sh
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc      5112 Oct 10 01:31 queuedata.json
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc       100 Oct 10 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 16:42:39] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 16:32 run_atlas
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc       105 Oct 10 16:32 job.xml
[2025-10-10 16:42:39] -rw-r--r-- 2 boinc boinc 222216303 Oct 10 16:32 EVNT.46676267._001179.pool.root.1
[2025-10-10 16:42:39] -rw-r--r-- 2 boinc boinc    569672 Oct 10 16:32 input.tar.gz
[2025-10-10 16:42:39] -rw-r--r-- 2 boinc boinc     15120 Oct 10 16:32 start_atlas.sh
[2025-10-10 16:42:39] drwxrwx--x 2 boinc boinc      4096 Oct 10 16:32 shared
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc         0 Oct 10 16:32 boinc_setup_complete
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc      6439 Oct 10 16:32 init_data.xml
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc         0 Oct 10 16:32 boinc_lockfile
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc      2549 Oct 10 16:32 pandaJob.out
[2025-10-10 16:42:39] -rw------- 1 boinc boinc    975525 Oct 10 16:32 agis_schedconf.cvmfs.json
[2025-10-10 16:42:39] -rw------- 1 boinc boinc   1560580 Oct 10 16:32 agis_ddmendpoints.agis.ALL.json
[2025-10-10 16:42:39] drwx------ 5 boinc boinc      4096 Oct 10 16:32 pilot3
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc       525 Oct 10 16:39 boinc_task_state.xml
[2025-10-10 16:42:39] -rw------- 1 boinc boinc      1011 Oct 10 16:39 memory_monitor_summary.json
[2025-10-10 16:42:39] -rw------- 1 boinc boinc     58820 Oct 10 16:40 log.46676269._028099.job.log.tgz.1
[2025-10-10 16:42:39] -rw------- 1 boinc boinc        95 Oct 10 16:41 pilot_heartbeat.json
[2025-10-10 16:42:39] -rw------- 1 boinc boinc     10445 Oct 10 16:42 heartbeat.json
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc        23 Oct 10 16:42 wrapper_checkpoint.txt
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc      8192 Oct 10 16:42 boinc_mmap_file
[2025-10-10 16:42:39] -rw------- 1 boinc boinc      4556 Oct 10 16:42 pilotlog.txt
[2025-10-10 16:42:39] -rw------- 1 boinc boinc    135413 Oct 10 16:42 log.46676269._028099.job.log.1
[2025-10-10 16:42:39] -rw------- 1 boinc boinc       188 Oct 10 16:42 output.list
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc       620 Oct 10 16:42 runtime_log
[2025-10-10 16:42:39] -rw------- 1 boinc boinc    215040 Oct 10 16:42 result.tar.gz
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc      8624 Oct 10 16:42 runtime_log.err
[2025-10-10 16:42:39] -rw------- 1 boinc boinc       649 Oct 10 16:42 rjuMDm5HFR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmEwOMDmXmZMsn.diag
[2025-10-10 16:42:39] -rw-r--r-- 1 boinc boinc      5786 Oct 10 16:42 stderr.txt
[2025-10-10 16:42:39] No HITS result produced
[2025-10-10 16:42:39]  *** Contents of shared directory: ***
[2025-10-10 16:42:39] total 217804
[2025-10-10 16:42:39] -rw-r--r-- 2 boinc boinc 222216303 Oct 10 16:32 ATLAS.root_0
[2025-10-10 16:42:39] -rw-r--r-- 2 boinc boinc    569672 Oct 10 16:32 input.tar.gz
[2025-10-10 16:42:39] -rw-r--r-- 2 boinc boinc     15120 Oct 10 16:32 start_atlas.sh
[2025-10-10 16:42:39] -rw------- 1 boinc boinc    215040 Oct 10 16:42 result.tar.gz
16:42:40 (2057548): run_atlas exited; CPU time 60.059362
16:42:40 (2057548): called boinc_finish(0)

</stderr_txt>
]]>

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