Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:01:34 (1174019): wrapper (7.7.26015): starting
12:01:34 (1174019): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 12:01:34] Arguments: --nthreads 8
[2025-10-10 12:01:34] Threads: 8
[2025-10-10 12:01:34] Checking for CVMFS
[2025-10-10 12:01:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 12:01:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 12:01:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 12:01:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 12:01:38] 2.13.2.0 894583 126595 257248 151553 2 269 29744382 32503809 26927 16776704 0 88086738 99.705 75267614 31579 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 12:01:38] CVMFS is ok
[2025-10-10 12:01:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 12:01:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 12:01:38] Further information can be found at the LHC@home message board.
[2025-10-10 12:01:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 12:01:38] Checking for apptainer binary...
[2025-10-10 12:01:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 12:01:38] Running /usr/bin/apptainer --version
[2025-10-10 12:01:38] apptainer version 1.4.3-1.el9
[2025-10-10 12:01:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 12:01:40] c-4-35.aglt2.org
[2025-10-10 12:01:40] apptainer works
[2025-10-10 12:01:40] Set ATHENA_PROC_NUMBER=8
[2025-10-10 12:01:40] Set ATHENA_CORE_NUMBER=8
[2025-10-10 12:01:40] Starting ATLAS job with PandaID=6837396795
[2025-10-10 12:01:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:00:08 (1174019): BOINC client no longer exists - exiting
19:00:08 (1174019): timer handler: client dead, exiting
19:13:19 (2392851): wrapper (7.7.26015): starting
19:13:19 (2392851): wrapper: running run_atlas (--nthreads 9)
[2025-10-10 19:13:19] Arguments: --nthreads 9
[2025-10-10 19:13:19] Threads: 9
[2025-10-10 19:13:19] This job has been restarted, cleaning up previous attempt
[2025-10-10 19:13:19] Checking for CVMFS
[2025-10-10 19:13:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 19:13:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 19:13:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 19:13:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 19:13:19] 2.13.2.0 894583 127027 263256 151564 3 218 32157861 32503809 23650 16776704 0 89131738 99.706 75913147 31449 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 19:13:19] CVMFS is ok
[2025-10-10 19:13:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 19:13:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 19:13:19] Further information can be found at the LHC@home message board.
[2025-10-10 19:13:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 19:13:19] Checking for apptainer binary...
[2025-10-10 19:13:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 19:13:19] Running /usr/bin/apptainer --version
[2025-10-10 19:13:20] apptainer version 1.4.3-1.el9
[2025-10-10 19:13:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 19:13:20] c-4-35.aglt2.org
[2025-10-10 19:13:20] apptainer works
[2025-10-10 19:13:20] Set ATHENA_PROC_NUMBER=9
[2025-10-10 19:13:20] Set ATHENA_CORE_NUMBER=9
[2025-10-10 19:13:20] Starting ATLAS job with PandaID=6837396795
[2025-10-10 19:13:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 07:58:51]  *** The last 200 lines of the pilot log: ***
[2025-10-11 07:58:51] 2025-10-11 10:02:25,635 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 07:58:51] 2025-10-11 10:02:25,705 | INFO     | fitting pss+swap vs Time
[2025-10-11 07:58:51] 2025-10-11 10:02:25,743 | INFO     | sum of square deviations: 79396870908.29918
[2025-10-11 07:58:51] 2025-10-11 10:02:25,791 | INFO     | sum of deviations: -185590226169.5118
[2025-10-11 07:58:51] 2025-10-11 10:02:25,792 | INFO     | mean x: 1760157458.7874017
[2025-10-11 07:58:51] 2025-10-11 10:02:25,792 | INFO     | mean y: 2115046.411023622
[2025-10-11 07:58:51] 2025-10-11 10:02:25,792 | INFO     | -- intersect: 4116484002.431948
[2025-10-11 07:58:51] 2025-10-11 10:02:25,822 | INFO     | intersect: 4116484002.431948
[2025-10-11 07:58:51] 2025-10-11 10:02:25,823 | INFO     | chi2: 4.780042582279148
[2025-10-11 07:58:51] 2025-10-11 10:02:25,824 | INFO     | sum of square deviations: 77536408806.29991
[2025-10-11 07:58:51] 2025-10-11 10:02:25,911 | INFO     | sum of deviations: -79787609634.29994
[2025-10-11 07:58:51] 2025-10-11 10:02:25,911 | INFO     | mean x: 1760157306.3
[2025-10-11 07:58:51] 2025-10-11 10:02:25,912 | INFO     | mean y: 2123694.7952380953
[2025-10-11 07:58:51] 2025-10-11 10:02:25,912 | INFO     | -- intersect: 1813385606.6135542
[2025-10-11 07:58:51] 2025-10-11 10:02:25,912 | INFO     | intersect: 1813385606.6135542
[2025-10-11 07:58:51] 2025-10-11 10:02:25,913 | INFO     | chi2: 2.7724855281481315
[2025-10-11 07:58:51] 2025-10-11 10:02:25,913 | INFO     | current chi2=2.7724855281481315 (change=41.99872740827768 %)
[2025-10-11 07:58:51] 2025-10-11 10:02:25,914 | INFO     | sum of square deviations: 75704980695.39828
[2025-10-11 07:58:51] 2025-10-11 10:02:25,979 | INFO     | sum of deviations: -59173123643.3648
[2025-10-11 07:58:51] 2025-10-11 10:02:25,979 | INFO     | mean x: 1760157153.8016
[2025-10-11 07:58:51] 2025-10-11 10:02:25,979 | INFO     | mean y: 2125407.9648
[2025-10-11 07:58:51] 2025-10-11 10:02:25,979 | INFO     | -- intersect: 1377913314.3473735
[2025-10-11 07:58:51] 2025-10-11 10:02:25,979 | INFO     | intersect: 1377913314.3473735
[2025-10-11 07:58:51] 2025-10-11 10:02:26,007 | INFO     | chi2: 2.717565618100751
[2025-10-11 07:58:51] 2025-10-11 10:02:26,007 | INFO     | current chi2=2.717565618100751 (change=1.9808907743537978 %)
[2025-10-11 07:58:51] 2025-10-11 10:02:26,008 | INFO     | right removable region: 624
[2025-10-11 07:58:51] 2025-10-11 10:02:26,009 | INFO     | sum of square deviations: 77535754944.69853
[2025-10-11 07:58:51] 2025-10-11 10:02:26,110 | INFO     | sum of deviations: -306098757491.5874
[2025-10-11 07:58:51] 2025-10-11 10:02:26,110 | INFO     | mean x: 1760157611.3015873
[2025-10-11 07:58:51] 2025-10-11 10:02:26,110 | INFO     | mean y: 2124904.8873015875
[2025-10-11 07:58:51] 2025-10-11 10:02:26,110 | INFO     | -- intersect: 6950945590.170579
[2025-10-11 07:58:51] 2025-10-11 10:02:26,111 | INFO     | intersect: 6950945590.170579
[2025-10-11 07:58:51] 2025-10-11 10:02:26,111 | INFO     | chi2: 2.7012841591517316
[2025-10-11 07:58:51] 2025-10-11 10:02:26,112 | INFO     | current chi2=2.7012841591517316 (change=43.48828252773125 %)
[2025-10-11 07:58:51] 2025-10-11 10:02:26,113 | INFO     | sum of square deviations: 75704018231.09782
[2025-10-11 07:58:51] 2025-10-11 10:02:26,220 | INFO     | sum of deviations: -329705354572.4881
[2025-10-11 07:58:51] 2025-10-11 10:02:26,221 | INFO     | mean x: 1760157763.8128
[2025-10-11 07:58:51] 2025-10-11 10:02:26,221 | INFO     | mean y: 2126862.936
[2025-10-11 07:58:51] 2025-10-11 10:02:26,221 | INFO     | -- intersect: 7667947689.643804
[2025-10-11 07:58:51] 2025-10-11 10:02:26,221 | INFO     | intersect: 7667947689.643804
[2025-10-11 07:58:51] 2025-10-11 10:02:26,222 | INFO     | chi2: 2.541484775866926
[2025-10-11 07:58:51] 2025-10-11 10:02:26,222 | INFO     | current chi2=2.541484775866926 (change=5.915682093030396 %)
[2025-10-11 07:58:51] 2025-10-11 10:02:26,222 | INFO     | left removable region: 20
[2025-10-11 07:58:51] 2025-10-11 10:02:26,223 | INFO     | sum of square deviations: 68326518975.422264
[2025-10-11 07:58:51] 2025-10-11 10:02:26,438 | INFO     | sum of deviations: -194119038441.8095
[2025-10-11 07:58:51] 2025-10-11 10:02:26,438 | INFO     | mean x: 1760157733.3394039
[2025-10-11 07:58:51] 2025-10-11 10:02:26,438 | INFO     | mean y: 2137198.5844370862
[2025-10-11 07:58:51] 2025-10-11 10:02:26,438 | INFO     | -- intersect: 5002832855.634752
[2025-10-11 07:58:51] 2025-10-11 10:02:26,438 | INFO     | intersect: 5002832855.634752
[2025-10-11 07:58:51] 2025-10-11 10:02:26,439 | INFO     | chi2: 0.45607346420258116
[2025-10-11 07:58:51] 2025-10-11 10:02:26,439 | INFO     | -- intersect: 5002832855.634752
[2025-10-11 07:58:51] 2025-10-11 10:02:26,439 | INFO     | current memory leak: -2.84 B/s (using 604 data points, chi2=0.46)
[2025-10-11 07:58:51] 2025-10-11 10:02:26,440 | INFO     | could have reported an average CPU frequency of 2599 MHz (24 samples)
[2025-10-11 07:58:51] 2025-10-11 10:02:26,444 | INFO     | ..............................
[2025-10-11 07:58:51] 2025-10-11 10:02:26,444 | INFO     | . Timing measurements:
[2025-10-11 07:58:51] 2025-10-11 10:02:26,445 | INFO     | . get job = 0 s
[2025-10-11 07:58:51] 2025-10-11 10:02:26,445 | INFO     | . initial setup = 2 s
[2025-10-11 07:58:51] 2025-10-11 10:02:26,445 | INFO     | . payload setup = 25 s
[2025-10-11 07:58:51] 2025-10-11 10:02:26,445 | INFO     | . stage-in = 0 s
[2025-10-11 07:58:51] 2025-10-11 10:02:26,445 | INFO     | . payload execution = 38760 s
[2025-10-11 07:58:51] 2025-10-11 10:02:26,445 | INFO     | . stage-out = 15 s
[2025-10-11 07:58:51] 2025-10-11 10:02:26,445 | INFO     | . log creation = 1 s
[2025-10-11 07:58:51] 2025-10-11 10:02:26,445 | INFO     | ..............................
[2025-10-11 07:58:51] 2025-10-11 10:02:28,337 | INFO     | 
[2025-10-11 07:58:51] 2025-10-11 10:02:28,337 | INFO     | job summary report
[2025-10-11 07:58:51] 2025-10-11 10:02:28,337 | INFO     | --------------------------------------------------
[2025-10-11 07:58:51] 2025-10-11 10:02:28,338 | INFO     | PanDA job id: 6837396795
[2025-10-11 07:58:51] 2025-10-11 10:02:28,338 | INFO     | task id: 46676269
[2025-10-11 07:58:51] 2025-10-11 10:02:28,338 | INFO     | errors: (none)
[2025-10-11 07:58:51] 2025-10-11 10:02:28,338 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 07:58:51] 2025-10-11 10:02:28,338 | INFO     | pilot state: finished 
[2025-10-11 07:58:51] 2025-10-11 10:02:28,338 | INFO     | transexitcode: 0
[2025-10-11 07:58:51] 2025-10-11 10:02:28,338 | INFO     | exeerrorcode: 0
[2025-10-11 07:58:51] 2025-10-11 10:02:28,338 | INFO     | exeerrordiag: 
[2025-10-11 07:58:51] 2025-10-11 10:02:28,338 | INFO     | exitcode: 0
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | exitmsg: OK
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | cpuconsumptiontime: 49522 s
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | nevents: 400
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | neventsw: 0
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | pid: 2428669
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | pgrp: 2428669
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | corecount: 9
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | event service: False
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | sizes: {0: 2348630, 1: 2348714, 2: 2348885, 13: 2348913, 18: 2349231, 23: 2349259, 38791: 2389798, 38792: 2389797, 38808: 2398851, 38810: 2398907, 38883: 2399101}
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | --------------------------------------------------
[2025-10-11 07:58:51] 2025-10-11 10:02:28,339 | INFO     | 
[2025-10-11 07:58:51] 2025-10-11 10:02:28,340 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 07:58:51] 2025-10-11 10:02:28,511 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,511 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,511 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,511 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,512 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,513 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,513 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,513 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,513 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 07:58:51] 2025-10-11 10:02:28,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,513 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 07:58:51] 2025-10-11 10:02:28,513 | INFO     | job 6837396795 has completed (purged errors)
[2025-10-11 07:58:51] 2025-10-11 10:02:28,513 | INFO     | overall cleanup function is called
[2025-10-11 07:58:51] 2025-10-11 10:02:29,623 | INFO     | PID=2401550 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 07:58:51] 2025-10-11 10:02:29,626 | INFO     | .. there are 40 such processes running
[2025-10-11 07:58:51] 2025-10-11 10:02:29,697 | INFO     | --- collectZombieJob: --- 10, [2428669]
[2025-10-11 07:58:51] 2025-10-11 10:02:29,697 | INFO     | zombie collector waiting for pid 2428669
[2025-10-11 07:58:51] 2025-10-11 10:02:29,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 07:58:51] 2025-10-11 10:02:29,698 | INFO     | collected zombie processes
[2025-10-11 07:58:51] 2025-10-11 10:02:29,698 | INFO     | will attempt to kill all subprocesses of pid=2428669
[2025-10-11 07:58:51] 2025-10-11 10:02:38,430 | INFO     | process IDs to be killed: [2428669] (in reverse order)
[2025-10-11 07:58:51] 2025-10-11 10:02:40,140 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 07:58:51] 2025-10-11 10:02:40,141 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 07:58:51] 2025-10-11 10:02:40,497 | INFO     | did not find any defunct processes belonging to 2428669
[2025-10-11 07:58:51] 2025-10-11 10:02:40,714 | INFO     | did not find any defunct processes belonging to 2428669
[2025-10-11 07:58:51] 2025-10-11 10:02:40,714 | INFO     | ready for new job
[2025-10-11 07:58:51] 2025-10-11 10:02:40,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 07:58:51] 2025-10-11 10:02:40,717 | INFO     | ***************************************
[2025-10-11 07:58:51] 2025-10-11 10:02:40,717 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 07:58:51] 2025-10-11 10:02:40,796 | INFO     | ***************************************
[2025-10-11 07:58:51] 2025-10-11 10:02:40,796 | INFO     | 
[2025-10-11 07:58:51] 2025-10-11 10:02:40,798 | INFO     | architecture information:
[2025-10-11 07:58:51] 2025-10-11 10:02:40,903 | INFO     | executing command: cat /etc/os-release
[2025-10-11 07:58:51] 2025-10-11 10:02:41,170 | INFO     | cat /etc/os-release:
[2025-10-11 07:58:51] NAME="CentOS Linux"
[2025-10-11 07:58:51] VERSION="7 (Core)"
[2025-10-11 07:58:51] ID="centos"
[2025-10-11 07:58:51] ID_LIKE="rhel fedora"
[2025-10-11 07:58:51] VERSION_ID="7"
[2025-10-11 07:58:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 07:58:51] ANSI_COLOR="0;31"
[2025-10-11 07:58:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 07:58:51] HOME_URL="https://www.centos.org/"
[2025-10-11 07:58:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 07:58:51] 
[2025-10-11 07:58:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 07:58:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 07:58:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 07:58:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 07:58:51] 
[2025-10-11 07:58:51] 2025-10-11 10:02:41,171 | INFO     | ***************************************
[2025-10-11 07:58:51] 2025-10-11 10:02:41,676 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 07:58:51] 2025-10-11 10:02:41,810 | INFO     | sufficient remaining disk space (94765056000 B)
[2025-10-11 07:58:51] 2025-10-11 10:02:41,810 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 07:58:51] 2025-10-11 10:02:41,810 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 07:58:51] 2025-10-11 10:02:41,810 | INFO     | update_server=False
[2025-10-11 07:58:51] 2025-10-11 10:02:41,810 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 07:58:51] 2025-10-11 10:02:41,811 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 07:58:51] 2025-10-11 10:02:41,811 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 07:58:51] 2025-10-11 10:02:41,811 | INFO     | aborting loop
[2025-10-11 07:58:51] 2025-10-11 10:02:41,850 | INFO     | all data control threads have been joined
[2025-10-11 07:58:51] 2025-10-11 10:02:41,858 | INFO     | all job control threads have been joined
[2025-10-11 07:58:51] 2025-10-11 10:02:41,999 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 07:58:51] 2025-10-11 10:02:42,097 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 07:58:51] 2025-10-11 10:02:42,425 | INFO     | all payload control threads have been joined
[2025-10-11 07:58:51] 2025-10-11 10:02:42,818 | INFO     | [job] retrieve thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:42,819 | INFO     | [job] job monitor thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:42,856 | INFO     | [data] control thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:42,865 | INFO     | [job] control thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:43,007 | INFO     | [payload] validate_post thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:43,112 | INFO     | [job] queue monitor thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:43,452 | INFO     | [payload] control thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:44,008 | INFO     | [data] copytool_out thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:44,029 | INFO     | [job] validate thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:44,040 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:44,047 | INFO     | [data] copytool_in thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:44,059 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:44,060 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:44,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:44,409 | INFO     | [payload] failed_post thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:02:45,838 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 07:58:51] 2025-10-11 10:03:05,948 | INFO     | [monitor] cgroup control has ended
[2025-10-11 07:58:51] 2025-10-11 10:03:06,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980492543808)>', '<ExcThread(monitor, started 139980005426944)>']
[2025-10-11 07:58:51] 2025-10-11 10:03:11,418 | INFO     | PID=2401550 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 07:58:51] 2025-10-11 10:03:11,418 | INFO     | .. there are 41 such processes running
[2025-10-11 07:58:51] 2025-10-11 10:03:11,418 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 07:58:51] 2025-10-11 10:03:11,418 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 07:58:51] 2025-10-11 10:03:11,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 07:58:51] 2025-10-11 10:03:11,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 07:58:51] 2025-10-11 10:03:11,419 | INFO     | [monitor] control thread has ended
[2025-10-11 07:58:51] 2025-10-11 10:03:11,701 | INFO     | all workflow threads have been joined
[2025-10-11 07:58:51] 2025-10-11 10:03:11,701 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 07:58:51] 2025-10-11 10:03:11,702 | INFO     | traces error code: 0
[2025-10-11 07:58:51] 2025-10-11 10:03:11,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 07:58:51] 2025-10-11 10:03:14,047 [wrapper] ==== pilot stdout END ====
[2025-10-11 07:58:51] 2025-10-11 10:03:14,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 07:58:51] 2025-10-11 10:03:14,264 [wrapper] pilotpid: 2401550
[2025-10-11 07:58:51] 2025-10-11 10:03:14,292 [wrapper] Pilot exit status: 0
[2025-10-11 07:58:51] 2025-10-11 10:03:14,513 [wrapper] pandaids: 6837396795 6837396795
[2025-10-11 07:58:51] 2025-10-11 10:03:16,067 [wrapper] cleanup supervisor_pilot  403226 2401551
[2025-10-11 07:58:51] 2025-10-11 10:03:16,111 [wrapper] Test setup, not cleaning
[2025-10-11 07:58:51] 2025-10-11 10:03:16,129 [wrapper] apfmon messages muted
[2025-10-11 07:58:51] 2025-10-11 10:03:16,143 [wrapper] ==== wrapper stdout END ====
[2025-10-11 07:58:51] 2025-10-11 10:03:16,155 [wrapper] ==== wrapper stderr END ====
[2025-10-11 07:58:51]  *** Error codes and diagnostics ***
[2025-10-11 07:58:51]     "exeErrorCode": 0,
[2025-10-11 07:58:51]     "exeErrorDiag": "",
[2025-10-11 07:58:51]     "pilotErrorCode": 0,
[2025-10-11 07:58:51]     "pilotErrorDiag": "",
[2025-10-11 07:58:51]  *** Listing of results directory ***
[2025-10-11 07:58:51] total 634956
[2025-10-11 07:58:51] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 22:00 pilot3.tar.gz
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 22:01 queuedata.json
[2025-10-11 07:58:51] -rwx------. 1 boincer umatlas     36292 Oct  9 22:02 runpilot2-wrapper.sh
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas       100 Oct 10 12:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 07:58:51] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 12:01 run_atlas
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas       105 Oct 10 12:01 job.xml
[2025-10-11 07:58:51] -rw-r--r--. 3 boincer umatlas 220246592 Oct 10 12:01 EVNT.46676267._001236.pool.root.1
[2025-10-11 07:58:51] -rw-r--r--. 3 boincer umatlas 220246592 Oct 10 12:01 ATLAS.root_0
[2025-10-11 07:58:51] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 12:01 start_atlas.sh
[2025-10-11 07:58:51] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 12:01 shared
[2025-10-11 07:58:51] -rw-r--r--. 2 boincer umatlas    569679 Oct 10 12:01 input.tar.gz
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas         0 Oct 10 12:01 boinc_lockfile
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 19:13 pandaJob.out
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas    975517 Oct 10 19:13 agis_schedconf.cvmfs.json
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas 196426958 Oct 11 05:56 HITS.46676269._030298.pool.root.1
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas       531 Oct 11 05:57 boinc_task_state.xml
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas      1054 Oct 11 06:00 memory_monitor_summary.json
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas   1560580 Oct 11 06:00 agis_ddmendpoints.agis.ALL.json
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas    713671 Oct 11 06:01 log.46676269._030298.job.log.tgz.1
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas      7845 Oct 11 06:02 heartbeat.json
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas        96 Oct 11 06:02 pilot_heartbeat.json
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas      4824 Oct 11 06:03 pilotlog.txt
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas   3963765 Oct 11 06:03 log.46676269._030298.job.log.1
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas       357 Oct 11 06:03 output.list
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas       620 Oct 11 06:03 runtime_log
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas   4700160 Oct 11 06:03 result.tar.gz
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas      8779 Oct 11 06:03 runtime_log.err
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas       786 Oct 11 06:03 Q7qMDmxdHR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmI0bNDmBERAGn.diag
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas      6660 Oct 11 07:55 init_data.xml
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas        28 Oct 11 07:58 wrapper_checkpoint.txt
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 07:58 boinc_mmap_file
[2025-10-11 07:58:51] -rw-r--r--. 1 boincer umatlas     23395 Oct 11 07:58 stderr.txt
[2025-10-11 07:58:51] HITS file was successfully produced:
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas 196426958 Oct 11 05:56 shared/HITS.pool.root.1
[2025-10-11 07:58:51]  *** Contents of shared directory: ***
[2025-10-11 07:58:51] total 412088
[2025-10-11 07:58:51] -rw-r--r--. 3 boincer umatlas 220246592 Oct 10 12:01 ATLAS.root_0
[2025-10-11 07:58:51] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 12:01 start_atlas.sh
[2025-10-11 07:58:51] -rw-r--r--. 2 boincer umatlas    569679 Oct 10 12:01 input.tar.gz
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas 196426958 Oct 11 05:56 HITS.pool.root.1
[2025-10-11 07:58:51] -rw-------. 1 boincer umatlas   4700160 Oct 11 06:03 result.tar.gz
07:58:52 (2392851): run_atlas exited; CPU time 50938.517931
07:58:52 (2392851): called boinc_finish(0)

</stderr_txt>
]]>

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