Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:19:45 (973661): wrapper (7.7.26015): starting
23:19:45 (973661): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 23:19:46] Arguments: --nthreads 12
[2025-10-10 23:19:46] Threads: 12
[2025-10-10 23:19:46] Checking for CVMFS
[2025-10-10 23:19:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 23:19:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 23:19:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 23:19:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 23:19:47] 2.13.1.0 1016623 91069 319432 151569 0 65 20949233 39288832 6441 16776704 2 49500028 99.697 43091338 35506 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 23:19:47] CVMFS is ok
[2025-10-10 23:19:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 23:19:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 23:19:47] Further information can be found at the LHC@home message board.
[2025-10-10 23:19:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 23:19:47] Checking for apptainer binary...
[2025-10-10 23:19:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 23:19:47] Running /usr/bin/apptainer --version
[2025-10-10 23:19:48] apptainer version 1.4.3-1.el9
[2025-10-10 23:19:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 23:19:48] c-211-18.aglt2.org
[2025-10-10 23:19:48] apptainer works
[2025-10-10 23:19:49] Set ATHENA_PROC_NUMBER=12
[2025-10-10 23:19:49] Set ATHENA_CORE_NUMBER=12
[2025-10-10 23:19:49] Starting ATLAS job with PandaID=6837379052
[2025-10-10 23:19:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 15:28:00]  *** The last 200 lines of the pilot log: ***
[2025-10-11 15:28:00] 2025-10-11 19:26:21,805 | INFO     | sum of deviations: -514043003494.6641
[2025-10-11 15:28:00] 2025-10-11 19:26:21,805 | INFO     | mean x: 1760181798.2468355
[2025-10-11 15:28:00] 2025-10-11 19:26:21,805 | INFO     | mean y: 2676439.0284810127
[2025-10-11 15:28:00] 2025-10-11 19:26:21,806 | INFO     | -- intersect: 3427638374.434875
[2025-10-11 15:28:00] 2025-10-11 19:26:21,806 | INFO     | intersect: 3427638374.434875
[2025-10-11 15:28:00] 2025-10-11 19:26:21,811 | INFO     | chi2: 8.682864083575346
[2025-10-11 15:28:00] 2025-10-11 19:26:21,813 | INFO     | sum of square deviations: 260023204427.90292
[2025-10-11 15:28:00] 2025-10-11 19:26:21,869 | INFO     | sum of deviations: -188045925069.43903
[2025-10-11 15:28:00] 2025-10-11 19:26:21,869 | INFO     | mean x: 1760181645.7560976
[2025-10-11 15:28:00] 2025-10-11 19:26:21,870 | INFO     | mean y: 2688395.9893955463
[2025-10-11 15:28:00] 2025-10-11 19:26:21,870 | INFO     | -- intersect: 1275632426.4835222
[2025-10-11 15:28:00] 2025-10-11 19:26:21,870 | INFO     | intersect: 1275632426.4835222
[2025-10-11 15:28:00] 2025-10-11 19:26:21,876 | INFO     | chi2: 5.052328314340009
[2025-10-11 15:28:00] 2025-10-11 19:26:21,876 | INFO     | current chi2=5.052328314340009 (change=41.81265230332144 %)
[2025-10-11 15:28:00] 2025-10-11 19:26:21,878 | INFO     | sum of square deviations: 255909426238.43033
[2025-10-11 15:28:00] 2025-10-11 19:26:21,931 | INFO     | sum of deviations: 13003582384.626875
[2025-10-11 15:28:00] 2025-10-11 19:26:21,932 | INFO     | mean x: 1760181493.2643924
[2025-10-11 15:28:00] 2025-10-11 19:26:21,932 | INFO     | mean y: 2695833.231343284
[2025-10-11 15:28:00] 2025-10-11 19:26:21,932 | INFO     | -- intersect: -86744659.03967512
[2025-10-11 15:28:00] 2025-10-11 19:26:21,933 | INFO     | intersect: -86744659.03967512
[2025-10-11 15:28:00] 2025-10-11 19:26:21,938 | INFO     | chi2: 2.7934200083658434
[2025-10-11 15:28:00] 2025-10-11 19:26:21,939 | INFO     | current chi2=2.7934200083658434 (change=44.71024378132183 %)
[2025-10-11 15:28:00] 2025-10-11 19:26:21,940 | INFO     | sum of square deviations: 251839218948.37265
[2025-10-11 15:28:00] 2025-10-11 19:26:22,203 | INFO     | time since job start (57957s) is within the limit (172800.0s)
[2025-10-11 15:28:00] 2025-10-11 19:26:22,214 | INFO     | sum of deviations: 12074379445.228283
[2025-10-11 15:28:00] 2025-10-11 19:26:22,260 | INFO     | mean x: 1760181340.7717042
[2025-10-11 15:28:00] 2025-10-11 19:26:22,261 | INFO     | mean y: 2695798.3344051447
[2025-10-11 15:28:00] 2025-10-11 19:26:22,261 | INFO     | -- intersect: -81695733.25323504
[2025-10-11 15:28:00] 2025-10-11 19:26:22,261 | INFO     | intersect: -81695733.25323504
[2025-10-11 15:28:00] 2025-10-11 19:26:22,262 | INFO     | chi2: 2.793267788115132
[2025-10-11 15:28:00] 2025-10-11 19:26:22,263 | INFO     | current chi2=2.793267788115132 (change=0.005449243230717244 %)
[2025-10-11 15:28:00] 2025-10-11 19:26:22,263 | INFO     | right removable region: 932
[2025-10-11 15:28:00] 2025-10-11 19:26:22,318 | INFO     | monitor loop #2683: job 0:6837379052 is in state 'finished'
[2025-10-11 15:28:00] 2025-10-11 19:26:22,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 15:28:00] 2025-10-11 19:26:22,328 | INFO     | sum of square deviations: 260022194267.90262
[2025-10-11 15:28:00] 2025-10-11 19:26:22,673 | INFO     | sum of deviations: -737716455125.927
[2025-10-11 15:28:00] 2025-10-11 19:26:22,722 | INFO     | mean x: 1760181950.7560976
[2025-10-11 15:28:00] 2025-10-11 19:26:22,722 | INFO     | mean y: 2684630.639448568
[2025-10-11 15:28:00] 2025-10-11 19:26:22,723 | INFO     | -- intersect: 4996547530.475446
[2025-10-11 15:28:00] 2025-10-11 19:26:22,723 | INFO     | intersect: 4996547530.475446
[2025-10-11 15:28:00] 2025-10-11 19:26:22,724 | INFO     | chi2: 6.639275657167964
[2025-10-11 15:28:00] 2025-10-11 19:26:22,725 | INFO     | current chi2=6.639275657167964 (change=23.53587948328097 %)
[2025-10-11 15:28:00] 2025-10-11 19:26:22,725 | INFO     | left removable region: 10
[2025-10-11 15:28:00] 2025-10-11 19:26:22,753 | INFO     | sum of square deviations: 243035368207.67993
[2025-10-11 15:28:00] 2025-10-11 19:26:23,260 | INFO     | sum of deviations: -227829256184.12097
[2025-10-11 15:28:00] 2025-10-11 19:26:23,260 | INFO     | mean x: 1760181615.2895877
[2025-10-11 15:28:00] 2025-10-11 19:26:23,260 | INFO     | mean y: 2704869.1540130153
[2025-10-11 15:28:00] 2025-10-11 19:26:23,260 | INFO     | -- intersect: 1652756345.6852343
[2025-10-11 15:28:00] 2025-10-11 19:26:23,260 | INFO     | intersect: 1652756345.6852343
[2025-10-11 15:28:00] 2025-10-11 19:26:23,345 | INFO     | chi2: 0.6520263776257993
[2025-10-11 15:28:00] 2025-10-11 19:26:23,345 | INFO     | -- intersect: 1652756345.6852343
[2025-10-11 15:28:00] 2025-10-11 19:26:23,346 | INFO     | current memory leak: -0.94 B/s (using 922 data points, chi2=0.65)
[2025-10-11 15:28:00] 2025-10-11 19:26:23,347 | INFO     | could have reported an average CPU frequency of 2899 MHz (34 samples)
[2025-10-11 15:28:00] 2025-10-11 19:26:23,348 | INFO     | ..............................
[2025-10-11 15:28:00] 2025-10-11 19:26:23,387 | INFO     | . Timing measurements:
[2025-10-11 15:28:00] 2025-10-11 19:26:23,387 | INFO     | . get job = 0 s
[2025-10-11 15:28:00] 2025-10-11 19:26:23,387 | INFO     | . initial setup = 4 s
[2025-10-11 15:28:00] 2025-10-11 19:26:23,387 | INFO     | . payload setup = 22 s
[2025-10-11 15:28:00] 2025-10-11 19:26:23,388 | INFO     | . stage-in = 0 s
[2025-10-11 15:28:00] 2025-10-11 19:26:23,388 | INFO     | . payload execution = 57798 s
[2025-10-11 15:28:00] 2025-10-11 19:26:23,388 | INFO     | . stage-out = 14 s
[2025-10-11 15:28:00] 2025-10-11 19:26:23,388 | INFO     | . log creation = 2 s
[2025-10-11 15:28:00] 2025-10-11 19:26:23,388 | INFO     | ..............................
[2025-10-11 15:28:00] 2025-10-11 19:26:24,803 | INFO     | 
[2025-10-11 15:28:00] 2025-10-11 19:26:24,832 | INFO     | job summary report
[2025-10-11 15:28:00] 2025-10-11 19:26:24,832 | INFO     | --------------------------------------------------
[2025-10-11 15:28:00] 2025-10-11 19:26:24,832 | INFO     | PanDA job id: 6837379052
[2025-10-11 15:28:00] 2025-10-11 19:26:24,833 | INFO     | task id: 46676269
[2025-10-11 15:28:00] 2025-10-11 19:26:24,833 | INFO     | errors: (none)
[2025-10-11 15:28:00] 2025-10-11 19:26:24,833 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 15:28:00] 2025-10-11 19:26:24,833 | INFO     | pilot state: finished 
[2025-10-11 15:28:00] 2025-10-11 19:26:24,833 | INFO     | transexitcode: 0
[2025-10-11 15:28:00] 2025-10-11 19:26:24,833 | INFO     | exeerrorcode: 0
[2025-10-11 15:28:00] 2025-10-11 19:26:24,834 | INFO     | exeerrordiag: 
[2025-10-11 15:28:00] 2025-10-11 19:26:24,834 | INFO     | exitcode: 0
[2025-10-11 15:28:00] 2025-10-11 19:26:24,834 | INFO     | exitmsg: OK
[2025-10-11 15:28:00] 2025-10-11 19:26:24,834 | INFO     | cpuconsumptiontime: 81588 s
[2025-10-11 15:28:00] 2025-10-11 19:26:24,834 | INFO     | nevents: 400
[2025-10-11 15:28:00] 2025-10-11 19:26:24,834 | INFO     | neventsw: 0
[2025-10-11 15:28:00] 2025-10-11 19:26:24,834 | INFO     | pid: 985164
[2025-10-11 15:28:00] 2025-10-11 19:26:24,835 | INFO     | pgrp: 985164
[2025-10-11 15:28:00] 2025-10-11 19:26:24,835 | INFO     | corecount: 12
[2025-10-11 15:28:00] 2025-10-11 19:26:24,835 | INFO     | event service: False
[2025-10-11 15:28:00] 2025-10-11 19:26:24,835 | INFO     | sizes: {0: 2348027, 1: 2348712, 2: 2348712, 3: 2348911, 4: 2348939, 15: 2348939, 16: 2349357, 26: 2349385, 57828: 2398082, 57829: 2398081, 57845: 2407135, 57848: 2
[2025-10-11 15:28:00] 2025-10-11 19:26:24,835 | INFO     | --------------------------------------------------
[2025-10-11 15:28:00] 2025-10-11 19:26:24,835 | INFO     | 
[2025-10-11 15:28:00] 2025-10-11 19:26:24,836 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 15:28:00] 2025-10-11 19:26:25,697 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,698 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,698 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,698 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,698 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,699 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,699 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,699 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,699 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,699 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,700 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 15:28:00] 2025-10-11 19:26:25,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,808 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 15:28:00] 2025-10-11 19:26:25,809 | INFO     | job 6837379052 has completed (purged errors)
[2025-10-11 15:28:00] 2025-10-11 19:26:25,809 | INFO     | overall cleanup function is called
[2025-10-11 15:28:00] 2025-10-11 19:26:27,050 | INFO     | --- collectZombieJob: --- 10, [985164]
[2025-10-11 15:28:00] 2025-10-11 19:26:27,050 | INFO     | zombie collector waiting for pid 985164
[2025-10-11 15:28:00] 2025-10-11 19:26:27,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 15:28:00] 2025-10-11 19:26:27,051 | INFO     | collected zombie processes
[2025-10-11 15:28:00] 2025-10-11 19:26:27,051 | INFO     | will attempt to kill all subprocesses of pid=985164
[2025-10-11 15:28:00] 2025-10-11 19:26:27,958 | INFO     | PID=978710 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 15:28:00] 2025-10-11 19:26:27,958 | INFO     | .. there are 9 such processes running
[2025-10-11 15:28:00] 2025-10-11 19:26:32,415 | INFO     | process IDs to be killed: [985164] (in reverse order)
[2025-10-11 15:28:00] 2025-10-11 19:26:33,115 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 15:28:00] 2025-10-11 19:26:33,116 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 15:28:00] 2025-10-11 19:26:33,224 | INFO     | did not find any defunct processes belonging to 985164
[2025-10-11 15:28:00] 2025-10-11 19:26:33,334 | INFO     | did not find any defunct processes belonging to 985164
[2025-10-11 15:28:00] 2025-10-11 19:26:33,334 | INFO     | ready for new job
[2025-10-11 15:28:00] 2025-10-11 19:26:33,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 15:28:00] 2025-10-11 19:26:33,440 | INFO     | ***************************************
[2025-10-11 15:28:00] 2025-10-11 19:26:33,441 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 15:28:00] 2025-10-11 19:26:33,441 | INFO     | ***************************************
[2025-10-11 15:28:00] 2025-10-11 19:26:33,441 | INFO     | 
[2025-10-11 15:28:00] 2025-10-11 19:26:33,443 | INFO     | architecture information:
[2025-10-11 15:28:00] 2025-10-11 19:26:33,494 | INFO     | executing command: cat /etc/os-release
[2025-10-11 15:28:00] 2025-10-11 19:26:33,589 | INFO     | cat /etc/os-release:
[2025-10-11 15:28:00] NAME="CentOS Linux"
[2025-10-11 15:28:00] VERSION="7 (Core)"
[2025-10-11 15:28:00] ID="centos"
[2025-10-11 15:28:00] ID_LIKE="rhel fedora"
[2025-10-11 15:28:00] VERSION_ID="7"
[2025-10-11 15:28:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 15:28:00] ANSI_COLOR="0;31"
[2025-10-11 15:28:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 15:28:00] HOME_URL="https://www.centos.org/"
[2025-10-11 15:28:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 15:28:00] 
[2025-10-11 15:28:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 15:28:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 15:28:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 15:28:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 15:28:00] 
[2025-10-11 15:28:00] 2025-10-11 19:26:33,589 | INFO     | ***************************************
[2025-10-11 15:28:00] 2025-10-11 19:26:34,096 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 15:28:00] 2025-10-11 19:26:35,076 | INFO     | sufficient remaining disk space (51909754880 B)
[2025-10-11 15:28:00] 2025-10-11 19:26:35,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 15:28:00] 2025-10-11 19:26:35,103 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 15:28:00] 2025-10-11 19:26:35,103 | INFO     | update_server=False
[2025-10-11 15:28:00] 2025-10-11 19:26:35,104 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 15:28:00] 2025-10-11 19:26:35,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 15:28:00] 2025-10-11 19:26:35,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:28:00] 2025-10-11 19:26:35,132 | INFO     | aborting loop
[2025-10-11 15:28:00] 2025-10-11 19:26:35,407 | INFO     | all data control threads have been joined
[2025-10-11 15:28:00] 2025-10-11 19:26:35,985 | INFO     | all job control threads have been joined
[2025-10-11 15:28:00] 2025-10-11 19:26:36,121 | INFO     | [job] retrieve thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:36,138 | INFO     | [job] job monitor thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:36,208 | INFO     | all payload control threads have been joined
[2025-10-11 15:28:00] 2025-10-11 19:26:36,413 | INFO     | [data] control thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:36,707 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:36,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 15:28:00] 2025-10-11 19:26:36,994 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:37,007 | INFO     | [job] control thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:37,077 | INFO     | [payload] failed_post thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:37,138 | INFO     | [data] copytool_out thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:37,245 | INFO     | [payload] control thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:37,257 | INFO     | [payload] validate_post thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:37,437 | INFO     | [job] validate thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:37,466 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:37,498 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:37,499 | INFO     | [data] copytool_in thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:38,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 15:28:00] 2025-10-11 19:26:39,019 | INFO     | [job] queue monitor thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:26:41,009 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 15:28:00] 2025-10-11 19:27:10,254 | INFO     | PID=978710 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 15:28:00] 2025-10-11 19:27:10,319 | INFO     | .. there are 9 such processes running
[2025-10-11 15:28:00] 2025-10-11 19:27:10,321 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 15:28:00] 2025-10-11 19:27:10,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 15:28:00] 2025-10-11 19:27:10,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 15:28:00] 2025-10-11 19:27:30,168 | INFO     | [monitor] cgroup control has ended
[2025-10-11 15:28:00] 2025-10-11 19:27:31,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140414193944384)>', '<ExcThread(monitor, started 140413318969088)>']
[2025-10-11 15:28:00] 2025-10-11 19:27:31,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 15:28:00] 2025-10-11 19:27:31,546 | INFO     | [monitor] control thread has ended
[2025-10-11 15:28:00] 2025-10-11 19:27:36,164 | INFO     | all workflow threads have been joined
[2025-10-11 15:28:00] 2025-10-11 19:27:36,164 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 15:28:00] 2025-10-11 19:27:36,165 | INFO     | traces error code: 0
[2025-10-11 15:28:00] 2025-10-11 19:27:36,165 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 15:28:00] 2025-10-11 19:27:38,567 [wrapper] ==== pilot stdout END ====
[2025-10-11 15:28:00] 2025-10-11 19:27:38,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 15:28:00] 2025-10-11 19:27:38,822 [wrapper] pilotpid: 978710
[2025-10-11 15:28:00] 2025-10-11 19:27:38,876 [wrapper] Pilot exit status: 0
[2025-10-11 15:28:00] 2025-10-11 19:27:39,168 [wrapper] pandaids: 6837379052
[2025-10-11 15:28:00] 2025-10-11 19:27:39,325 [wrapper] cleanup supervisor_pilot 2313637 978711
[2025-10-11 15:28:00] 2025-10-11 19:27:39,339 [wrapper] Test setup, not cleaning
[2025-10-11 15:28:00] 2025-10-11 19:27:39,382 [wrapper] apfmon messages muted
[2025-10-11 15:28:00] 2025-10-11 19:27:39,432 [wrapper] ==== wrapper stdout END ====
[2025-10-11 15:28:00] 2025-10-11 19:27:39,577 [wrapper] ==== wrapper stderr END ====
[2025-10-11 15:28:00]  *** Error codes and diagnostics ***
[2025-10-11 15:28:00]     "exeErrorCode": 0,
[2025-10-11 15:28:00]     "exeErrorDiag": "",
[2025-10-11 15:28:00]     "pilotErrorCode": 0,
[2025-10-11 15:28:00]     "pilotErrorDiag": "",
[2025-10-11 15:28:00]  *** Listing of results directory ***
[2025-10-11 15:28:00] total 418164
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 21:33 pilot3.tar.gz
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 21:57 queuedata.json
[2025-10-11 15:28:00] -rwx------. 1 boincer umatlas     36292 Oct  9 21:57 runpilot2-wrapper.sh
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas       100 Oct 10 23:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 15:28:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 23:19 run_atlas
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas       105 Oct 10 23:19 job.xml
[2025-10-11 15:28:00] -rw-r--r--. 2 boincer umatlas 220669986 Oct 10 23:19 EVNT.46676267._001232.pool.root.1
[2025-10-11 15:28:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 23:19 start_atlas.sh
[2025-10-11 15:28:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 23:19 shared
[2025-10-11 15:28:00] -rw-r--r--. 2 boincer umatlas    569680 Oct 10 23:19 input.tar.gz
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas         0 Oct 10 23:19 boinc_lockfile
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas      2549 Oct 10 23:19 pandaJob.out
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas    975509 Oct 10 23:20 agis_schedconf.cvmfs.json
[2025-10-11 15:28:00] drwx------. 5 boincer umatlas      4096 Oct 10 23:20 pilot3
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas 189565685 Oct 11 15:16 HITS.46676269._030191.pool.root.1
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas       531 Oct 11 15:16 boinc_task_state.xml
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas      6525 Oct 11 15:20 init_data.xml
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas      1040 Oct 11 15:24 memory_monitor_summary.json
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas   1560580 Oct 11 15:25 agis_ddmendpoints.agis.ALL.json
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas    966710 Oct 11 15:25 log.46676269._030191.job.log.tgz.1
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas      7822 Oct 11 15:26 heartbeat.json
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas        95 Oct 11 15:27 pilot_heartbeat.json
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas      4822 Oct 11 15:27 pilotlog.txt
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas   6072450 Oct 11 15:27 log.46676269._030191.job.log.1
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas       357 Oct 11 15:27 output.list
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas       620 Oct 11 15:27 runtime_log
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas   7055360 Oct 11 15:27 result.tar.gz
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas       658 Oct 11 15:27 Xb5MDm4YHR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMzbNDmxdQhom.diag
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas      8706 Oct 11 15:27 runtime_log.err
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas        28 Oct 11 15:27 wrapper_checkpoint.txt
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 15:28 boinc_mmap_file
[2025-10-11 15:28:00] -rw-r--r--. 1 boincer umatlas      2145 Oct 11 15:28 stderr.txt
[2025-10-11 15:28:00] HITS file was successfully produced:
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas 189565685 Oct 11 15:16 shared/HITS.pool.root.1
[2025-10-11 15:28:00]  *** Contents of shared directory: ***
[2025-10-11 15:28:00] total 408100
[2025-10-11 15:28:00] -rw-r--r--. 2 boincer umatlas 220669986 Oct 10 23:19 ATLAS.root_0
[2025-10-11 15:28:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 23:19 start_atlas.sh
[2025-10-11 15:28:00] -rw-r--r--. 2 boincer umatlas    569680 Oct 10 23:19 input.tar.gz
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas 189565685 Oct 11 15:16 HITS.pool.root.1
[2025-10-11 15:28:00] -rw-------. 1 boincer umatlas   7055360 Oct 11 15:27 result.tar.gz
15:28:02 (973661): run_atlas exited; CPU time 83302.068131
15:28:02 (973661): called boinc_finish(0)

</stderr_txt>
]]>

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