Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:24 (692379): wrapper (7.7.26015): starting
00:04:24 (692379): wrapper: running run_atlas (--nthreads 9)
[2025-10-10 00:04:24] Arguments: --nthreads 9
[2025-10-10 00:04:24] Threads: 9
[2025-10-10 00:04:24] Checking for CVMFS
[2025-10-10 00:04:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 00:04:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 00:04:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 00:04:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 00:04:27] 2.13.2.0 1270615 125877 618340 151533 2 279 12764831 21042176 28740 16776704 0 78425010 99.351 124808516 29303 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 00:04:27] CVMFS is ok
[2025-10-10 00:04:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 00:04:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 00:04:27] Further information can be found at the LHC@home message board.
[2025-10-10 00:04:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 00:04:27] Checking for apptainer binary...
[2025-10-10 00:04:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 00:04:27] Running /usr/bin/apptainer --version
[2025-10-10 00:04:27] apptainer version 1.4.3-1.el9
[2025-10-10 00:04:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 00:04:29] c-16-12.aglt2.org
[2025-10-10 00:04:29] apptainer works
[2025-10-10 00:04:29] Set ATHENA_PROC_NUMBER=9
[2025-10-10 00:04:29] Set ATHENA_CORE_NUMBER=9
[2025-10-10 00:04:29] Starting ATLAS job with PandaID=6837365218
[2025-10-10 00:04:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 07:12:55]  *** The last 200 lines of the pilot log: ***
[2025-10-11 07:12:55] 2025-10-11 09:33:10,661 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 07:12:55] 2025-10-11 09:33:10,661 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 07:12:55] 2025-10-11 09:33:10,839 | INFO     | fitting pss+swap vs Time
[2025-10-11 07:12:55] 2025-10-11 09:33:10,849 | INFO     | sum of square deviations: 1608258539404.5503
[2025-10-11 07:12:55] 2025-10-11 09:33:10,920 | INFO     | PID=701703 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 07:12:55] 2025-10-11 09:33:10,943 | INFO     | .. there are 40 such processes running
[2025-10-11 07:12:55] 2025-10-11 09:33:11,082 | INFO     | sum of deviations: 2079877985076.794
[2025-10-11 07:12:55] 2025-10-11 09:33:11,087 | INFO     | mean x: 1760122281.177354
[2025-10-11 07:12:55] 2025-10-11 09:33:11,087 | INFO     | mean y: 2049218.4794916234
[2025-10-11 07:12:55] 2025-10-11 09:33:11,087 | INFO     | -- intersect: -2274226326.7567444
[2025-10-11 07:12:55] 2025-10-11 09:33:11,087 | INFO     | intersect: -2274226326.7567444
[2025-10-11 07:12:55] 2025-10-11 09:33:11,090 | INFO     | chi2: 15.000716285736786
[2025-10-11 07:12:55] 2025-10-11 09:33:11,096 | INFO     | sum of square deviations: 1594362134128.5393
[2025-10-11 07:12:55] 2025-10-11 09:33:11,305 | INFO     | sum of deviations: 2290352165866.101
[2025-10-11 07:12:55] 2025-10-11 09:33:11,306 | INFO     | mean x: 1760122128.6784472
[2025-10-11 07:12:55] 2025-10-11 09:33:11,306 | INFO     | mean y: 2051525.8146002318
[2025-10-11 07:12:55] 2025-10-11 09:33:11,306 | INFO     | -- intersect: -2526420170.3668933
[2025-10-11 07:12:55] 2025-10-11 09:33:11,306 | INFO     | intersect: -2526420170.3668933
[2025-10-11 07:12:55] 2025-10-11 09:33:11,393 | INFO     | chi2: 13.54004057495081
[2025-10-11 07:12:55] 2025-10-11 09:33:11,393 | INFO     | current chi2=13.54004057495081 (change=9.737373089142674 %)
[2025-10-11 07:12:55] 2025-10-11 09:33:11,394 | INFO     | right removable region: 1725
[2025-10-11 07:12:55] 2025-10-11 09:33:11,396 | INFO     | sum of square deviations: 1594361313065.0999
[2025-10-11 07:12:55] 2025-10-11 09:33:12,004 | INFO     | time since job start (105972s) is within the limit (172800.0s)
[2025-10-11 07:12:55] 2025-10-11 09:33:12,269 | INFO     | sum of deviations: 1604916089493.161
[2025-10-11 07:12:55] 2025-10-11 09:33:12,270 | INFO     | mean x: 1760122433.6807647
[2025-10-11 07:12:55] 2025-10-11 09:33:12,270 | INFO     | mean y: 2054429.6645422943
[2025-10-11 07:12:55] 2025-10-11 09:33:12,270 | INFO     | -- intersect: -1769720129.931019
[2025-10-11 07:12:55] 2025-10-11 09:33:12,270 | INFO     | intersect: -1769720129.931019
[2025-10-11 07:12:55] 2025-10-11 09:33:12,280 | INFO     | chi2: 11.012567687845277
[2025-10-11 07:12:55] 2025-10-11 09:33:12,280 | INFO     | current chi2=11.012567687845277 (change=26.586387755920583 %)
[2025-10-11 07:12:55] 2025-10-11 09:33:12,334 | INFO     | sum of square deviations: 1580544472709.9797
[2025-10-11 07:12:55] 2025-10-11 09:33:12,585 | INFO     | monitor loop #3612: job 0:6837365218 is in state 'finished'
[2025-10-11 07:12:55] 2025-10-11 09:33:12,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 07:12:55] 2025-10-11 09:33:14,158 | INFO     | time since job start (105974s) is within the limit (172800.0s)
[2025-10-11 07:12:55] 2025-10-11 09:33:14,212 | INFO     | sum of deviations: 1241047216898.8005
[2025-10-11 07:12:55] 2025-10-11 09:33:14,212 | INFO     | mean x: 1760122586.1836143
[2025-10-11 07:12:55] 2025-10-11 09:33:14,212 | INFO     | mean y: 2058445.4753050553
[2025-10-11 07:12:55] 2025-10-11 09:33:14,292 | INFO     | -- intersect: -1379993926.1599958
[2025-10-11 07:12:55] 2025-10-11 09:33:14,292 | INFO     | intersect: -1379993926.1599958
[2025-10-11 07:12:55] 2025-10-11 09:33:14,295 | INFO     | chi2: 8.740748622250116
[2025-10-11 07:12:55] 2025-10-11 09:33:14,295 | INFO     | current chi2=8.740748622250116 (change=20.629331233101965 %)
[2025-10-11 07:12:55] 2025-10-11 09:33:14,295 | INFO     | left removable region: 20
[2025-10-11 07:12:55] 2025-10-11 09:33:14,341 | INFO     | sum of square deviations: 1536868828568.5664
[2025-10-11 07:12:55] 2025-10-11 09:33:14,794 | INFO     | sum of deviations: 968611874817.7935
[2025-10-11 07:12:55] 2025-10-11 09:33:14,794 | INFO     | mean x: 1760122708.1882699
[2025-10-11 07:12:55] 2025-10-11 09:33:14,795 | INFO     | mean y: 2066587.5395894428
[2025-10-11 07:12:55] 2025-10-11 09:33:14,795 | INFO     | -- intersect: -1107251087.8507864
[2025-10-11 07:12:55] 2025-10-11 09:33:14,795 | INFO     | intersect: -1107251087.8507864
[2025-10-11 07:12:55] 2025-10-11 09:33:14,808 | INFO     | chi2: 5.010359238836134
[2025-10-11 07:12:55] 2025-10-11 09:33:14,809 | INFO     | -- intersect: -1107251087.8507864
[2025-10-11 07:12:55] 2025-10-11 09:33:14,809 | INFO     | current memory leak: 0.63 B/s (using 1705 data points, chi2=5.01)
[2025-10-11 07:12:55] 2025-10-11 09:33:14,810 | INFO     | could have reported an average CPU frequency of 2900 MHz (60 samples)
[2025-10-11 07:12:55] 2025-10-11 09:33:14,811 | INFO     | ..............................
[2025-10-11 07:12:55] 2025-10-11 09:33:14,811 | INFO     | . Timing measurements:
[2025-10-11 07:12:55] 2025-10-11 09:33:14,811 | INFO     | . get job = 2 s
[2025-10-11 07:12:55] 2025-10-11 09:33:14,811 | INFO     | . initial setup = 24 s
[2025-10-11 07:12:55] 2025-10-11 09:33:14,811 | INFO     | . payload setup = 75 s
[2025-10-11 07:12:55] 2025-10-11 09:33:14,827 | INFO     | . stage-in = 1 s
[2025-10-11 07:12:55] 2025-10-11 09:33:14,827 | INFO     | . payload execution = 105628 s
[2025-10-11 07:12:55] 2025-10-11 09:33:14,827 | INFO     | . stage-out = 18 s
[2025-10-11 07:12:55] 2025-10-11 09:33:14,827 | INFO     | . log creation = 5 s
[2025-10-11 07:12:55] 2025-10-11 09:33:14,827 | INFO     | ..............................
[2025-10-11 07:12:55] 2025-10-11 09:33:16,288 | INFO     | time since job start (105976s) is within the limit (172800.0s)
[2025-10-11 07:12:55] 2025-10-11 09:33:17,315 | INFO     | 
[2025-10-11 07:12:55] 2025-10-11 09:33:17,315 | INFO     | job summary report
[2025-10-11 07:12:55] 2025-10-11 09:33:17,316 | INFO     | --------------------------------------------------
[2025-10-11 07:12:55] 2025-10-11 09:33:17,316 | INFO     | PanDA job id: 6837365218
[2025-10-11 07:12:55] 2025-10-11 09:33:17,316 | INFO     | task id: 46676269
[2025-10-11 07:12:55] 2025-10-11 09:33:17,316 | INFO     | errors: (none)
[2025-10-11 07:12:55] 2025-10-11 09:33:17,316 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 07:12:55] 2025-10-11 09:33:17,316 | INFO     | pilot state: finished 
[2025-10-11 07:12:55] 2025-10-11 09:33:17,317 | INFO     | transexitcode: 0
[2025-10-11 07:12:55] 2025-10-11 09:33:17,317 | INFO     | exeerrorcode: 0
[2025-10-11 07:12:55] 2025-10-11 09:33:17,317 | INFO     | exeerrordiag: 
[2025-10-11 07:12:55] 2025-10-11 09:33:17,317 | INFO     | exitcode: 0
[2025-10-11 07:12:55] 2025-10-11 09:33:17,317 | INFO     | exitmsg: OK
[2025-10-11 07:12:55] 2025-10-11 09:33:17,317 | INFO     | cpuconsumptiontime: 77209 s
[2025-10-11 07:12:55] 2025-10-11 09:33:17,318 | INFO     | nevents: 400
[2025-10-11 07:12:55] 2025-10-11 09:33:17,318 | INFO     | neventsw: 0
[2025-10-11 07:12:55] 2025-10-11 09:33:17,318 | INFO     | pid: 738077
[2025-10-11 07:12:55] 2025-10-11 09:33:17,318 | INFO     | pgrp: 738077
[2025-10-11 07:12:55] 2025-10-11 09:33:17,318 | INFO     | corecount: 9
[2025-10-11 07:12:55] 2025-10-11 09:33:17,318 | INFO     | event service: False
[2025-10-11 07:12:55] 2025-10-11 09:33:17,318 | INFO     | sizes: {0: 2348028, 2: 2348629, 3: 2348713, 5: 2348797, 7: 2348968, 9: 2348996, 21: 2349152, 33: 2349180, 44: 2349236, 58: 2349264, 70: 2349292, 79: 2349862, 82: 2
[2025-10-11 07:12:55] 2025-10-11 09:33:17,369 | INFO     | --------------------------------------------------
[2025-10-11 07:12:55] 2025-10-11 09:33:17,369 | INFO     | 
[2025-10-11 07:12:55] 2025-10-11 09:33:17,369 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 07:12:55] 2025-10-11 09:33:17,757 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,757 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,757 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 07:12:55] 2025-10-11 09:33:17,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 07:12:55] 2025-10-11 09:33:17,765 | INFO     | job 6837365218 has completed (purged errors)
[2025-10-11 07:12:55] 2025-10-11 09:33:17,765 | INFO     | overall cleanup function is called
[2025-10-11 07:12:55] 2025-10-11 09:33:18,789 | INFO     | --- collectZombieJob: --- 10, [738077]
[2025-10-11 07:12:55] 2025-10-11 09:33:18,789 | INFO     | zombie collector waiting for pid 738077
[2025-10-11 07:12:55] 2025-10-11 09:33:18,789 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 07:12:55] 2025-10-11 09:33:18,789 | INFO     | collected zombie processes
[2025-10-11 07:12:55] 2025-10-11 09:33:18,790 | INFO     | will attempt to kill all subprocesses of pid=738077
[2025-10-11 07:12:55] 2025-10-11 09:33:32,102 | INFO     | process IDs to be killed: [738077] (in reverse order)
[2025-10-11 07:12:55] 2025-10-11 09:33:34,191 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 07:12:55] 2025-10-11 09:33:34,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 07:12:55] 2025-10-11 09:33:34,484 | INFO     | did not find any defunct processes belonging to 738077
[2025-10-11 07:12:55] 2025-10-11 09:33:34,794 | INFO     | did not find any defunct processes belonging to 738077
[2025-10-11 07:12:55] 2025-10-11 09:33:34,794 | INFO     | ready for new job
[2025-10-11 07:12:55] 2025-10-11 09:33:34,795 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 07:12:55] 2025-10-11 09:33:34,856 | INFO     | ***************************************
[2025-10-11 07:12:55] 2025-10-11 09:33:34,857 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 07:12:55] 2025-10-11 09:33:34,857 | INFO     | ***************************************
[2025-10-11 07:12:55] 2025-10-11 09:33:34,857 | INFO     | 
[2025-10-11 07:12:55] 2025-10-11 09:33:34,905 | INFO     | architecture information:
[2025-10-11 07:12:55] 2025-10-11 09:33:34,954 | INFO     | executing command: cat /etc/os-release
[2025-10-11 07:12:55] 2025-10-11 09:33:35,141 | INFO     | cat /etc/os-release:
[2025-10-11 07:12:55] NAME="CentOS Linux"
[2025-10-11 07:12:55] VERSION="7 (Core)"
[2025-10-11 07:12:55] ID="centos"
[2025-10-11 07:12:55] ID_LIKE="rhel fedora"
[2025-10-11 07:12:55] VERSION_ID="7"
[2025-10-11 07:12:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 07:12:55] ANSI_COLOR="0;31"
[2025-10-11 07:12:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 07:12:55] HOME_URL="https://www.centos.org/"
[2025-10-11 07:12:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 07:12:55] 
[2025-10-11 07:12:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 07:12:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 07:12:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 07:12:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 07:12:55] 
[2025-10-11 07:12:55] 2025-10-11 09:33:35,141 | INFO     | ***************************************
[2025-10-11 07:12:55] 2025-10-11 09:33:35,646 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 07:12:55] 2025-10-11 09:33:36,000 | INFO     | sufficient remaining disk space (52137295872 B)
[2025-10-11 07:12:55] 2025-10-11 09:33:36,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 07:12:55] 2025-10-11 09:33:36,001 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 07:12:55] 2025-10-11 09:33:36,001 | INFO     | update_server=False
[2025-10-11 07:12:55] 2025-10-11 09:33:36,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 07:12:55] 2025-10-11 09:33:36,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 07:12:55] 2025-10-11 09:33:36,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 07:12:55] 2025-10-11 09:33:36,420 | INFO     | all data control threads have been joined
[2025-10-11 07:12:55] 2025-10-11 09:33:36,443 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 07:12:55] 2025-10-11 09:33:36,443 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 07:12:55] 2025-10-11 09:33:36,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 07:12:55] 2025-10-11 09:33:36,443 | INFO     | will abort loop
[2025-10-11 07:12:55] 2025-10-11 09:33:36,894 | INFO     | all job control threads have been joined
[2025-10-11 07:12:55] 2025-10-11 09:33:36,916 | INFO     | all payload control threads have been joined
[2025-10-11 07:12:55] 2025-10-11 09:33:37,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 07:12:55] 2025-10-11 09:33:37,013 | INFO     | [job] retrieve thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,013 | INFO     | [job] queue monitor thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,038 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,322 | INFO     | [payload] validate_post thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,426 | INFO     | [data] control thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,449 | INFO     | [job] job monitor thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,561 | INFO     | [job] validate thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,561 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,569 | INFO     | [data] copytool_in thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,575 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,575 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,585 | INFO     | [payload] failed_post thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,903 | INFO     | [job] control thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:37,926 | INFO     | [payload] control thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:39,012 | INFO     | [data] copytool_out thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:40,013 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 07:12:55] 2025-10-11 09:33:54,886 | INFO     | PID=701703 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 07:12:55] 2025-10-11 09:33:54,887 | INFO     | .. there are 40 such processes running
[2025-10-11 07:12:55] 2025-10-11 09:33:54,945 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 07:12:55] 2025-10-11 09:33:54,945 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 07:12:55] 2025-10-11 09:33:54,945 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 07:12:55] 2025-10-11 09:34:16,089 | INFO     | [monitor] cgroup control has ended
[2025-10-11 07:12:55] 2025-10-11 09:34:17,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900630939456)>', '<ExcThread(monitor, started 139899701294848)>']
[2025-10-11 07:12:55] 2025-10-11 09:34:18,270 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 07:12:55] 2025-10-11 09:34:18,270 | INFO     | [monitor] control thread has ended
[2025-10-11 07:12:55] 2025-10-11 09:34:22,348 | INFO     | all workflow threads have been joined
[2025-10-11 07:12:55] 2025-10-11 09:34:22,348 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 07:12:55] 2025-10-11 09:34:22,348 | INFO     | traces error code: 0
[2025-10-11 07:12:55] 2025-10-11 09:34:22,349 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 07:12:55] 2025-10-11 09:34:25,042 [wrapper] ==== pilot stdout END ====
[2025-10-11 07:12:55] 2025-10-11 09:34:25,061 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 07:12:55] 2025-10-11 09:34:25,112 [wrapper] pilotpid: 701703
[2025-10-11 07:12:55] 2025-10-11 09:34:25,149 [wrapper] Pilot exit status: 0
[2025-10-11 07:12:55] 2025-10-11 09:34:25,402 [wrapper] pandaids: 6837365218
[2025-10-11 07:12:55] 2025-10-11 09:34:26,774 [wrapper] cleanup supervisor_pilot 1821894 701704
[2025-10-11 07:12:55] 2025-10-11 09:34:26,795 [wrapper] Test setup, not cleaning
[2025-10-11 07:12:55] 2025-10-11 09:34:26,819 [wrapper] apfmon messages muted
[2025-10-11 07:12:55] 2025-10-11 09:34:26,876 [wrapper] ==== wrapper stdout END ====
[2025-10-11 07:12:55] 2025-10-11 09:34:26,887 [wrapper] ==== wrapper stderr END ====
[2025-10-11 07:12:55]  *** Error codes and diagnostics ***
[2025-10-11 07:12:55]     "exeErrorCode": 0,
[2025-10-11 07:12:55]     "exeErrorDiag": "",
[2025-10-11 07:12:55]     "pilotErrorCode": 0,
[2025-10-11 07:12:55]     "pilotErrorDiag": "",
[2025-10-11 07:12:55]  *** Listing of results directory ***
[2025-10-11 07:12:55] total 421664
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 18:39 pilot3.tar.gz
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 18:43 queuedata.json
[2025-10-11 07:12:55] -rwx------. 1 boincer umatlas     36292 Oct  9 18:44 runpilot2-wrapper.sh
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas       100 Oct 10 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 07:12:55] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 00:04 run_atlas
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas       105 Oct 10 00:04 job.xml
[2025-10-11 07:12:55] -rw-r--r--. 2 boincer umatlas 219016397 Oct 10 00:04 EVNT.46676267._001156.pool.root.1
[2025-10-11 07:12:55] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 00:04 start_atlas.sh
[2025-10-11 07:12:55] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 00:04 shared
[2025-10-11 07:12:55] -rw-r--r--. 2 boincer umatlas    569679 Oct 10 00:04 input.tar.gz
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas         0 Oct 10 00:04 boinc_lockfile
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas      2549 Oct 10 00:04 pandaJob.out
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas    975454 Oct 10 00:06 agis_schedconf.cvmfs.json
[2025-10-11 07:12:55] drwx------. 5 boincer umatlas      4096 Oct 10 00:07 pilot3
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas 187830685 Oct 11 05:28 HITS.46676269._027528.pool.root.1
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas       531 Oct 11 05:29 boinc_task_state.xml
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas      1039 Oct 11 05:31 memory_monitor_summary.json
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas   1560580 Oct 11 05:31 agis_ddmendpoints.agis.ALL.json
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas   1354125 Oct 11 05:31 log.46676269._027528.job.log.tgz.1
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas      7831 Oct 11 05:33 heartbeat.json
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas        95 Oct 11 05:33 pilot_heartbeat.json
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas      5009 Oct 11 05:34 pilotlog.txt
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas   9159370 Oct 11 05:34 log.46676269._027528.job.log.1
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas       357 Oct 11 05:34 output.list
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas       620 Oct 11 05:34 runtime_log
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas  10536960 Oct 11 05:34 result.tar.gz
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas      8700 Oct 11 05:34 runtime_log.err
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas       659 Oct 11 05:34 q0RLDm7XER8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQXbNDmIqq7Ym.diag
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas        28 Oct 11 07:12 wrapper_checkpoint.txt
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas      6524 Oct 11 07:12 init_data.xml
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 07:12 boinc_mmap_file
[2025-10-11 07:12:55] -rw-r--r--. 1 boincer umatlas     21351 Oct 11 07:12 stderr.txt
[2025-10-11 07:12:55] HITS file was successfully produced:
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas 187830685 Oct 11 05:28 shared/HITS.pool.root.1
[2025-10-11 07:12:55]  *** Contents of shared directory: ***
[2025-10-11 07:12:55] total 408188
[2025-10-11 07:12:55] -rw-r--r--. 2 boincer umatlas 219016397 Oct 10 00:04 ATLAS.root_0
[2025-10-11 07:12:55] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 00:04 start_atlas.sh
[2025-10-11 07:12:55] -rw-r--r--. 2 boincer umatlas    569679 Oct 10 00:04 input.tar.gz
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas 187830685 Oct 11 05:28 HITS.pool.root.1
[2025-10-11 07:12:55] -rw-------. 1 boincer umatlas  10536960 Oct 11 05:34 result.tar.gz
07:12:56 (692379): run_atlas exited; CPU time 81911.994963
07:12:56 (692379): called boinc_finish(0)

</stderr_txt>
]]>

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