Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:51:42 (526385): wrapper (7.7.26015): starting
22:51:42 (526385): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 22:51:42] Arguments: --nthreads 12
[2025-10-10 22:51:42] Threads: 12
[2025-10-10 22:51:42] Checking for CVMFS
[2025-10-10 22:51:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 22:51:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 22:51:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 22:51:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 22:51:43] 2.13.2.0 1056763 127245 283824 151569 0 102 23868149 32935936 26167 16776704 0 98648235 99.639 91851801 27748 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 22:51:43] CVMFS is ok
[2025-10-10 22:51:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 22:51:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 22:51:43] Further information can be found at the LHC@home message board.
[2025-10-10 22:51:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 22:51:43] Checking for apptainer binary...
[2025-10-10 22:51:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 22:51:43] Running /usr/bin/apptainer --version
[2025-10-10 22:51:43] apptainer version 1.4.3-1.el9
[2025-10-10 22:51:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 22:51:44] c-4-39.aglt2.org
[2025-10-10 22:51:44] apptainer works
[2025-10-10 22:51:44] Set ATHENA_PROC_NUMBER=12
[2025-10-10 22:51:44] Set ATHENA_CORE_NUMBER=12
[2025-10-10 22:51:44] Starting ATLAS job with PandaID=6837367605
[2025-10-10 22:51:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:09:37 (581703): wrapper (7.7.26015): starting
23:09:37 (581703): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 23:09:37] Arguments: --nthreads 12
[2025-10-10 23:09:37] Threads: 12
[2025-10-10 23:09:37] This job has been restarted, cleaning up previous attempt
[2025-10-10 23:09:37] Checking for CVMFS
[2025-10-10 23:09:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 23:09:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 23:09:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 23:09:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 23:09:39] 2.13.2.0 1056763 127263 285128 151569 2 266 24681717 32935937 26100 16776704 0 98696928 99.637 92110821 27735 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 23:09:39] CVMFS is ok
[2025-10-10 23:09:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 23:09:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 23:09:39] Further information can be found at the LHC@home message board.
[2025-10-10 23:09:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 23:09:39] Checking for apptainer binary...
[2025-10-10 23:09:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 23:09:39] Running /usr/bin/apptainer --version
[2025-10-10 23:09:39] apptainer version 1.4.3-1.el9
[2025-10-10 23:09:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 23:09:39] c-4-39.aglt2.org
[2025-10-10 23:09:39] apptainer works
[2025-10-10 23:09:39] Set ATHENA_PROC_NUMBER=12
[2025-10-10 23:09:39] Set ATHENA_CORE_NUMBER=12
[2025-10-10 23:09:39] Starting ATLAS job with PandaID=6837367605
[2025-10-10 23:09:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 16:43:11]  *** The last 200 lines of the pilot log: ***
[2025-10-11 16:43:11] 2025-10-11 20:42:05,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:43:11] 2025-10-11 20:42:06,257 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 16:43:11] 2025-10-11 20:42:06,264 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1802499999976
[2025-10-11 16:43:11] 2025-10-11 20:42:06,270 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837367605/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 16:43:11] 2025-10-11 20:42:06,271 | INFO     | time since job start (63116s) is within the limit (172800.0s)
[2025-10-11 16:43:11] 2025-10-11 20:42:06,272 | INFO     | extracted standard info from prmon json
[2025-10-11 16:43:11] 2025-10-11 20:42:06,272 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 16:43:11] 2025-10-11 20:42:06,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 16:43:11] 2025-10-11 20:42:06,273 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 16:43:11] 2025-10-11 20:42:06,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 16:43:11] 2025-10-11 20:42:06,295 | INFO     | fitting pss+swap vs Time
[2025-10-11 16:43:11] 2025-10-11 20:42:06,297 | INFO     | sum of square deviations: 341803381402.4953
[2025-10-11 16:43:11] 2025-10-11 20:42:06,335 | INFO     | sum of deviations: -233192551167.03497
[2025-10-11 16:43:11] 2025-10-11 20:42:06,336 | INFO     | mean x: 1760183761.4133592
[2025-10-11 16:43:11] 2025-10-11 20:42:06,336 | INFO     | mean y: 2276425.306873185
[2025-10-11 16:43:11] 2025-10-11 20:42:06,336 | INFO     | -- intersect: 1203147347.5386925
[2025-10-11 16:43:11] 2025-10-11 20:42:06,336 | INFO     | intersect: 1203147347.5386925
[2025-10-11 16:43:11] 2025-10-11 20:42:06,338 | INFO     | chi2: 3.553166712877806
[2025-10-11 16:43:11] 2025-10-11 20:42:06,339 | INFO     | sum of square deviations: 336864137408.4668
[2025-10-11 16:43:11] 2025-10-11 20:42:06,605 | INFO     | sum of deviations: -122985604420.77805
[2025-10-11 16:43:11] 2025-10-11 20:42:06,606 | INFO     | mean x: 1760183608.914397
[2025-10-11 16:43:11] 2025-10-11 20:42:06,606 | INFO     | mean y: 2279823.059338521
[2025-10-11 16:43:11] 2025-10-11 20:42:06,606 | INFO     | -- intersect: 644904611.4956114
[2025-10-11 16:43:11] 2025-10-11 20:42:06,606 | INFO     | intersect: 644904611.4956114
[2025-10-11 16:43:11] 2025-10-11 20:42:06,619 | INFO     | chi2: 2.736306482254912
[2025-10-11 16:43:11] 2025-10-11 20:42:06,619 | INFO     | current chi2=2.736306482254912 (change=22.98963985175064 %)
[2025-10-11 16:43:11] 2025-10-11 20:42:06,619 | INFO     | right removable region: 1027
[2025-10-11 16:43:11] 2025-10-11 20:42:06,621 | INFO     | sum of square deviations: 336863939951.637
[2025-10-11 16:43:11] 2025-10-11 20:42:06,647 | INFO     | sum of deviations: -404257155371.8218
[2025-10-11 16:43:11] 2025-10-11 20:42:06,648 | INFO     | mean x: 1760183913.9153697
[2025-10-11 16:43:11] 2025-10-11 20:42:06,648 | INFO     | mean y: 2281699.071011673
[2025-10-11 16:43:11] 2025-10-11 20:42:06,648 | INFO     | -- intersect: 2114609133.3248103
[2025-10-11 16:43:11] 2025-10-11 20:42:06,648 | INFO     | intersect: 2114609133.3248103
[2025-10-11 16:43:11] 2025-10-11 20:42:06,650 | INFO     | chi2: 1.9765841065724727
[2025-10-11 16:43:11] 2025-10-11 20:42:06,650 | INFO     | current chi2=1.9765841065724727 (change=44.37119712371774 %)
[2025-10-11 16:43:11] 2025-10-11 20:42:06,652 | INFO     | sum of square deviations: 331972313350.77014
[2025-10-11 16:43:11] 2025-10-11 20:42:06,765 | INFO     | sum of deviations: -389969232809.75555
[2025-10-11 16:43:11] 2025-10-11 20:42:06,766 | INFO     | mean x: 1760184066.4174
[2025-10-11 16:43:11] 2025-10-11 20:42:06,766 | INFO     | mean y: 2281252.896383187
[2025-10-11 16:43:11] 2025-10-11 20:42:06,766 | INFO     | -- intersect: 2069976667.180717
[2025-10-11 16:43:11] 2025-10-11 20:42:06,766 | INFO     | intersect: 2069976667.180717
[2025-10-11 16:43:11] 2025-10-11 20:42:06,767 | INFO     | chi2: 1.9265968165645262
[2025-10-11 16:43:11] 2025-10-11 20:42:06,768 | INFO     | current chi2=1.9265968165645262 (change=2.5289735884109583 %)
[2025-10-11 16:43:11] 2025-10-11 20:42:06,773 | INFO     | left removable region: 20
[2025-10-11 16:43:11] 2025-10-11 20:42:06,775 | INFO     | sum of square deviations: 316638152257.31494
[2025-10-11 16:43:11] 2025-10-11 20:42:07,175 | INFO     | sum of deviations: -278329467711.5412
[2025-10-11 16:43:11] 2025-10-11 20:42:07,175 | INFO     | mean x: 1760184188.4200597
[2025-10-11 16:43:11] 2025-10-11 20:42:07,175 | INFO     | mean y: 2285680.353525323
[2025-10-11 16:43:11] 2025-10-11 20:42:07,175 | INFO     | -- intersect: 1549512774.5765288
[2025-10-11 16:43:11] 2025-10-11 20:42:07,175 | INFO     | intersect: 1549512774.5765288
[2025-10-11 16:43:11] 2025-10-11 20:42:07,194 | INFO     | chi2: 1.046278353240057
[2025-10-11 16:43:11] 2025-10-11 20:42:07,194 | INFO     | -- intersect: 1549512774.5765288
[2025-10-11 16:43:11] 2025-10-11 20:42:07,195 | INFO     | current memory leak: -0.88 B/s (using 1007 data points, chi2=1.05)
[2025-10-11 16:43:11] 2025-10-11 20:42:07,196 | INFO     | could have reported an average CPU frequency of 2600 MHz (37 samples)
[2025-10-11 16:43:11] 2025-10-11 20:42:07,196 | INFO     | ..............................
[2025-10-11 16:43:11] 2025-10-11 20:42:07,196 | INFO     | . Timing measurements:
[2025-10-11 16:43:11] 2025-10-11 20:42:07,196 | INFO     | . get job = 0 s
[2025-10-11 16:43:11] 2025-10-11 20:42:07,196 | INFO     | . initial setup = 3 s
[2025-10-11 16:43:11] 2025-10-11 20:42:07,197 | INFO     | . payload setup = 17 s
[2025-10-11 16:43:11] 2025-10-11 20:42:07,197 | INFO     | . stage-in = 0 s
[2025-10-11 16:43:11] 2025-10-11 20:42:07,197 | INFO     | . payload execution = 63014 s
[2025-10-11 16:43:11] 2025-10-11 20:42:07,197 | INFO     | . stage-out = 5 s
[2025-10-11 16:43:11] 2025-10-11 20:42:07,197 | INFO     | . log creation = 0 s
[2025-10-11 16:43:11] 2025-10-11 20:42:07,197 | INFO     | ..............................
[2025-10-11 16:43:11] 2025-10-11 20:42:07,907 | INFO     | 
[2025-10-11 16:43:11] 2025-10-11 20:42:07,907 | INFO     | job summary report
[2025-10-11 16:43:11] 2025-10-11 20:42:07,907 | INFO     | --------------------------------------------------
[2025-10-11 16:43:11] 2025-10-11 20:42:07,907 | INFO     | PanDA job id: 6837367605
[2025-10-11 16:43:11] 2025-10-11 20:42:07,908 | INFO     | task id: 46676269
[2025-10-11 16:43:11] 2025-10-11 20:42:07,908 | INFO     | errors: (none)
[2025-10-11 16:43:11] 2025-10-11 20:42:07,908 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 16:43:11] 2025-10-11 20:42:07,908 | INFO     | pilot state: finished 
[2025-10-11 16:43:11] 2025-10-11 20:42:07,908 | INFO     | transexitcode: 0
[2025-10-11 16:43:11] 2025-10-11 20:42:07,908 | INFO     | exeerrorcode: 0
[2025-10-11 16:43:11] 2025-10-11 20:42:07,908 | INFO     | exeerrordiag: 
[2025-10-11 16:43:11] 2025-10-11 20:42:07,908 | INFO     | exitcode: 0
[2025-10-11 16:43:11] 2025-10-11 20:42:07,908 | INFO     | exitmsg: OK
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | cpuconsumptiontime: 50801 s
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | nevents: 400
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | neventsw: 0
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | pid: 597598
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | pgrp: 597598
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | corecount: 12
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | event service: False
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | sizes: {0: 2348685, 1: 2348884, 12: 2348884, 14: 2349174, 23: 2349202, 63038: 2401605, 63044: 2410659, 63082: 2410797}
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | --------------------------------------------------
[2025-10-11 16:43:11] 2025-10-11 20:42:07,909 | INFO     | 
[2025-10-11 16:43:11] 2025-10-11 20:42:07,910 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 16:43:11] 2025-10-11 20:42:07,939 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,940 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,940 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,940 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,940 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,940 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,940 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,940 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,940 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,940 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,941 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 16:43:11] 2025-10-11 20:42:07,942 | INFO     | job 6837367605 has completed (purged errors)
[2025-10-11 16:43:11] 2025-10-11 20:42:07,942 | INFO     | overall cleanup function is called
[2025-10-11 16:43:11] 2025-10-11 20:42:08,951 | INFO     | --- collectZombieJob: --- 10, [597598]
[2025-10-11 16:43:11] 2025-10-11 20:42:08,951 | INFO     | zombie collector waiting for pid 597598
[2025-10-11 16:43:11] 2025-10-11 20:42:08,951 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 16:43:11] 2025-10-11 20:42:08,951 | INFO     | collected zombie processes
[2025-10-11 16:43:11] 2025-10-11 20:42:08,952 | INFO     | will attempt to kill all subprocesses of pid=597598
[2025-10-11 16:43:11] 2025-10-11 20:42:09,613 | INFO     | process IDs to be killed: [597598] (in reverse order)
[2025-10-11 16:43:11] 2025-10-11 20:42:09,771 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 16:43:11] 2025-10-11 20:42:09,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 16:43:11] 2025-10-11 20:42:09,837 | INFO     | did not find any defunct processes belonging to 597598
[2025-10-11 16:43:11] 2025-10-11 20:42:09,992 | INFO     | did not find any defunct processes belonging to 597598
[2025-10-11 16:43:11] 2025-10-11 20:42:09,993 | INFO     | ready for new job
[2025-10-11 16:43:11] 2025-10-11 20:42:09,993 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 16:43:11] 2025-10-11 20:42:10,023 | INFO     | ***************************************
[2025-10-11 16:43:11] 2025-10-11 20:42:10,024 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 16:43:11] 2025-10-11 20:42:10,024 | INFO     | ***************************************
[2025-10-11 16:43:11] 2025-10-11 20:42:10,024 | INFO     | 
[2025-10-11 16:43:11] 2025-10-11 20:42:10,042 | INFO     | architecture information:
[2025-10-11 16:43:11] 2025-10-11 20:42:10,072 | INFO     | executing command: cat /etc/os-release
[2025-10-11 16:43:11] 2025-10-11 20:42:10,196 | INFO     | cat /etc/os-release:
[2025-10-11 16:43:11] NAME="CentOS Linux"
[2025-10-11 16:43:11] VERSION="7 (Core)"
[2025-10-11 16:43:11] ID="centos"
[2025-10-11 16:43:11] ID_LIKE="rhel fedora"
[2025-10-11 16:43:11] VERSION_ID="7"
[2025-10-11 16:43:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 16:43:11] ANSI_COLOR="0;31"
[2025-10-11 16:43:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 16:43:11] HOME_URL="https://www.centos.org/"
[2025-10-11 16:43:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 16:43:11] 
[2025-10-11 16:43:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 16:43:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 16:43:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 16:43:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 16:43:11] 
[2025-10-11 16:43:11] 2025-10-11 20:42:10,197 | INFO     | ***************************************
[2025-10-11 16:43:11] 2025-10-11 20:42:10,700 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 16:43:11] 2025-10-11 20:42:10,969 | INFO     | sufficient remaining disk space (74581016576 B)
[2025-10-11 16:43:11] 2025-10-11 20:42:10,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 16:43:11] 2025-10-11 20:42:10,969 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 16:43:11] 2025-10-11 20:42:10,970 | INFO     | update_server=False
[2025-10-11 16:43:11] 2025-10-11 20:42:10,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 16:43:11] 2025-10-11 20:42:11,057 | INFO     | all payload control threads have been joined
[2025-10-11 16:43:11] 2025-10-11 20:42:11,272 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 16:43:11] 2025-10-11 20:42:11,495 | INFO     | all data control threads have been joined
[2025-10-11 16:43:11] 2025-10-11 20:42:11,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:43:11] 2025-10-11 20:42:11,690 | INFO     | aborting loop
[2025-10-11 16:43:11] 2025-10-11 20:42:11,977 | INFO     | [job] retrieve thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:12,063 | INFO     | [payload] control thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:12,160 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:12,501 | INFO     | [data] control thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:12,507 | INFO     | [payload] validate_post thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:12,643 | INFO     | all job control threads have been joined
[2025-10-11 16:43:11] 2025-10-11 20:42:12,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 16:43:11] 2025-10-11 20:42:12,696 | INFO     | [job] job monitor thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:12,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:43:11] 2025-10-11 20:42:13,072 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:13,144 | INFO     | [payload] failed_post thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:13,164 | INFO     | [data] copytool_in thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:13,279 | INFO     | [data] copytool_out thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:13,316 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:13,327 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:13,423 | INFO     | [job] validate thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:13,648 | INFO     | [job] control thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:13,819 | INFO     | [job] queue monitor thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:16,667 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 16:43:11] 2025-10-11 20:42:38,398 | INFO     | 63121s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 16:43:11] 2025-10-11 20:42:40,479 | INFO     | PID=588445 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 16:43:11] 2025-10-11 20:42:40,479 | INFO     | .. there are 43 such processes running
[2025-10-11 16:43:11] 2025-10-11 20:42:40,480 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 16:43:11] 2025-10-11 20:42:40,480 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 16:43:11] 2025-10-11 20:42:40,480 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 16:43:11] 2025-10-11 20:43:04,352 | INFO     | [monitor] cgroup control has ended
[2025-10-11 16:43:11] 2025-10-11 20:43:04,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140273252095808)>', '<ExcThread(monitor, started 140272983840512)>']
[2025-10-11 16:43:11] 2025-10-11 20:43:05,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 16:43:11] 2025-10-11 20:43:05,668 | INFO     | [monitor] control thread has ended
[2025-10-11 16:43:11] 2025-10-11 20:43:09,898 | INFO     | all workflow threads have been joined
[2025-10-11 16:43:11] 2025-10-11 20:43:09,898 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 16:43:11] 2025-10-11 20:43:09,899 | INFO     | traces error code: 0
[2025-10-11 16:43:11] 2025-10-11 20:43:09,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 16:43:11] 2025-10-11 20:43:10,412 [wrapper] ==== pilot stdout END ====
[2025-10-11 16:43:11] 2025-10-11 20:43:10,422 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 16:43:11] 2025-10-11 20:43:10,427 [wrapper] pilotpid: 588445
[2025-10-11 16:43:11] 2025-10-11 20:43:10,471 [wrapper] Pilot exit status: 0
[2025-10-11 16:43:11] 2025-10-11 20:43:10,600 [wrapper] pandaids: 6837367605 6837367605
[2025-10-11 16:43:11] 2025-10-11 20:43:10,836 [wrapper] cleanup supervisor_pilot 3663788 588446
[2025-10-11 16:43:11] 2025-10-11 20:43:10,853 [wrapper] Test setup, not cleaning
[2025-10-11 16:43:11] 2025-10-11 20:43:10,859 [wrapper] apfmon messages muted
[2025-10-11 16:43:11] 2025-10-11 20:43:10,862 [wrapper] ==== wrapper stdout END ====
[2025-10-11 16:43:11] 2025-10-11 20:43:10,865 [wrapper] ==== wrapper stderr END ====
[2025-10-11 16:43:11]  *** Error codes and diagnostics ***
[2025-10-11 16:43:11]     "exeErrorCode": 0,
[2025-10-11 16:43:11]     "exeErrorDiag": "",
[2025-10-11 16:43:11]     "pilotErrorCode": 0,
[2025-10-11 16:43:11]     "pilotErrorDiag": "",
[2025-10-11 16:43:11]  *** Listing of results directory ***
[2025-10-11 16:43:11] total 635788
[2025-10-11 16:43:11] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 18:55 pilot3.tar.gz
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 19:18 queuedata.json
[2025-10-11 16:43:11] -rwx------. 1 boincer umatlas     36292 Oct  9 19:18 runpilot2-wrapper.sh
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas       100 Oct 10 22:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 16:43:11] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 22:51 run_atlas
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas       105 Oct 10 22:51 job.xml
[2025-10-11 16:43:11] -rw-r--r--. 3 boincer umatlas 218600332 Oct 10 22:51 EVNT.46676267._001172.pool.root.1
[2025-10-11 16:43:11] -rw-r--r--. 3 boincer umatlas 218600332 Oct 10 22:51 ATLAS.root_0
[2025-10-11 16:43:11] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 22:51 start_atlas.sh
[2025-10-11 16:43:11] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 22:51 shared
[2025-10-11 16:43:11] -rw-r--r--. 2 boincer umatlas    569684 Oct 10 22:51 input.tar.gz
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas         0 Oct 10 22:51 boinc_lockfile
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas      2549 Oct 10 23:09 pandaJob.out
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas    975509 Oct 10 23:10 agis_schedconf.cvmfs.json
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas      6658 Oct 11 16:37 init_data.xml
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas 192893661 Oct 11 16:39 HITS.46676269._027923.pool.root.1
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas       531 Oct 11 16:40 boinc_task_state.xml
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas      1055 Oct 11 16:41 memory_monitor_summary.json
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas   1560580 Oct 11 16:41 agis_ddmendpoints.agis.ALL.json
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas   1120768 Oct 11 16:41 log.46676269._027923.job.log.tgz.1
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas      7849 Oct 11 16:42 heartbeat.json
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas        96 Oct 11 16:42 pilot_heartbeat.json
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 16:43 boinc_mmap_file
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas        28 Oct 11 16:43 wrapper_checkpoint.txt
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas      4939 Oct 11 16:43 pilotlog.txt
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas   7403048 Oct 11 16:43 log.46676269._027923.job.log.1
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas       357 Oct 11 16:43 output.list
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas       620 Oct 11 16:43 runtime_log
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas   8540160 Oct 11 16:43 result.tar.gz
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas      8781 Oct 11 16:43 runtime_log.err
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas       784 Oct 11 16:43 3zEODmB5ER8n9Rq4apOajLDm4fhM0noT9bVof3QYDmXuOMDmibM0mm.diag
[2025-10-11 16:43:11] -rw-r--r--. 1 boincer umatlas     23384 Oct 11 16:43 stderr.txt
[2025-10-11 16:43:11] HITS file was successfully produced:
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas 192893661 Oct 11 16:39 shared/HITS.pool.root.1
[2025-10-11 16:43:11]  *** Contents of shared directory: ***
[2025-10-11 16:43:11] total 410776
[2025-10-11 16:43:11] -rw-r--r--. 3 boincer umatlas 218600332 Oct 10 22:51 ATLAS.root_0
[2025-10-11 16:43:11] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 22:51 start_atlas.sh
[2025-10-11 16:43:11] -rw-r--r--. 2 boincer umatlas    569684 Oct 10 22:51 input.tar.gz
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas 192893661 Oct 11 16:39 HITS.pool.root.1
[2025-10-11 16:43:11] -rw-------. 1 boincer umatlas   8540160 Oct 11 16:43 result.tar.gz
16:43:34 (581703): run_atlas exited; CPU time 53731.164475
16:43:34 (581703): called boinc_finish(0)

</stderr_txt>
]]>

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