Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:48:27 (385289): wrapper (7.7.26015): starting
06:48:27 (385289): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 06:48:27] Arguments: --nthreads 8
[2025-10-10 06:48:27] Threads: 8
[2025-10-10 06:48:27] Checking for CVMFS
[2025-10-10 06:48:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 06:48:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 06:48:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 06:48:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 06:48:30] 2.13.2.0 4308 12712 171792 151543 1 293 36656003 39288833 10506 16776704 0 12088370 99.682 8699103 30344 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 06:48:30] CVMFS is ok
[2025-10-10 06:48:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 06:48:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 06:48:30] Further information can be found at the LHC@home message board.
[2025-10-10 06:48:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 06:48:30] Checking for apptainer binary...
[2025-10-10 06:48:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 06:48:30] Running /usr/bin/apptainer --version
[2025-10-10 06:48:30] apptainer version 1.4.3-1.el9
[2025-10-10 06:48:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 06:48:32] c-211-32.aglt2.org
[2025-10-10 06:48:32] apptainer works
[2025-10-10 06:48:32] Set ATHENA_PROC_NUMBER=8
[2025-10-10 06:48:32] Set ATHENA_CORE_NUMBER=8
[2025-10-10 06:48:32] Starting ATLAS job with PandaID=6837366129
[2025-10-10 06:48:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:48:28 (1274441): wrapper (7.7.26015): starting
17:48:28 (1274441): wrapper: running run_atlas (--nthreads 10)
[2025-10-10 17:48:28] Arguments: --nthreads 10
[2025-10-10 17:48:28] Threads: 10
[2025-10-10 17:48:28] This job has been restarted, cleaning up previous attempt
[2025-10-10 17:48:28] Checking for CVMFS
[2025-10-10 17:48:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 17:48:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 17:48:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 17:48:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 17:48:29] 2.13.2.0 4308 13372 173688 151562 2 331 37373745 39288833 6861 16776704 0 12625374 99.695 8756906 30384 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 17:48:29] CVMFS is ok
[2025-10-10 17:48:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 17:48:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 17:48:29] Further information can be found at the LHC@home message board.
[2025-10-10 17:48:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 17:48:29] Checking for apptainer binary...
[2025-10-10 17:48:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 17:48:29] Running /usr/bin/apptainer --version
[2025-10-10 17:48:29] apptainer version 1.4.3-1.el9
[2025-10-10 17:48:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 17:48:29] c-211-32.aglt2.org
[2025-10-10 17:48:29] apptainer works
[2025-10-10 17:48:29] Set ATHENA_PROC_NUMBER=10
[2025-10-10 17:48:29] Set ATHENA_CORE_NUMBER=10
[2025-10-10 17:48:29] Starting ATLAS job with PandaID=6837366129
[2025-10-10 17:48:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 13:35:30]  *** The last 200 lines of the pilot log: ***
[2025-10-11 13:35:30] 2025-10-11 17:14:48,434 | INFO     | sum of deviations: 310155867715.4378
[2025-10-11 13:35:30] 2025-10-11 17:14:48,435 | INFO     | mean x: 1760167846.2515285
[2025-10-11 13:35:30] 2025-10-11 17:14:48,435 | INFO     | mean y: 2595434.32139738
[2025-10-11 13:35:30] 2025-10-11 17:14:48,435 | INFO     | -- intersect: -1170288879.179924
[2025-10-11 13:35:30] 2025-10-11 17:14:48,435 | INFO     | intersect: -1170288879.179924
[2025-10-11 13:35:30] 2025-10-11 17:14:48,506 | INFO     | chi2: 3.3195491358232263
[2025-10-11 13:35:30] 2025-10-11 17:14:48,508 | INFO     | sum of square deviations: 459384998000.74664
[2025-10-11 13:35:30] 2025-10-11 17:14:48,990 | INFO     | time since job start (69966s) is within the limit (172800.0s)
[2025-10-11 13:35:30] 2025-10-11 17:14:49,066 | INFO     | sum of deviations: 469136693712.53204
[2025-10-11 13:35:30] 2025-10-11 17:14:49,067 | INFO     | mean x: 1760167693.7517543
[2025-10-11 13:35:30] 2025-10-11 17:14:49,067 | INFO     | mean y: 2599416.984210526
[2025-10-11 13:35:30] 2025-10-11 17:14:49,067 | INFO     | -- intersect: -1794932622.198681
[2025-10-11 13:35:30] 2025-10-11 17:14:49,067 | INFO     | intersect: -1794932622.198681
[2025-10-11 13:35:30] 2025-10-11 17:14:49,069 | INFO     | chi2: 1.7183562487907476
[2025-10-11 13:35:30] 2025-10-11 17:14:49,069 | INFO     | current chi2=1.7183562487907476 (change=48.235251882644405 %)
[2025-10-11 13:35:30] 2025-10-11 17:14:49,131 | INFO     | sum of square deviations: 453366935027.4135
[2025-10-11 13:35:30] 2025-10-11 17:14:49,687 | INFO     | sum of deviations: 465833916203.71765
[2025-10-11 13:35:30] 2025-10-11 17:14:49,688 | INFO     | mean x: 1760167541.2546256
[2025-10-11 13:35:30] 2025-10-11 17:14:49,688 | INFO     | mean y: 2599333.291629956
[2025-10-11 13:35:30] 2025-10-11 17:14:49,688 | INFO     | -- intersect: -1805970448.8600652
[2025-10-11 13:35:30] 2025-10-11 17:14:49,688 | INFO     | intersect: -1805970448.8600652
[2025-10-11 13:35:30] 2025-10-11 17:14:49,734 | INFO     | chi2: 1.7183387019714935
[2025-10-11 13:35:30] 2025-10-11 17:14:49,734 | INFO     | current chi2=1.7183387019714935 (change=0.0010211397820667893 %)
[2025-10-11 13:35:30] 2025-10-11 17:14:49,735 | INFO     | right removable region: 1134
[2025-10-11 13:35:30] 2025-10-11 17:14:49,736 | INFO     | sum of square deviations: 459384542943.6939
[2025-10-11 13:35:30] 2025-10-11 17:14:50,390 | INFO     | sum of deviations: 90373473916.76761
[2025-10-11 13:35:30] 2025-10-11 17:14:50,391 | INFO     | mean x: 1760167998.7570176
[2025-10-11 13:35:30] 2025-10-11 17:14:50,391 | INFO     | mean y: 2600946.8728070175
[2025-10-11 13:35:30] 2025-10-11 17:14:50,391 | INFO     | -- intersect: -343672124.71439624
[2025-10-11 13:35:30] 2025-10-11 17:14:50,391 | INFO     | intersect: -343672124.71439624
[2025-10-11 13:35:30] 2025-10-11 17:14:50,462 | INFO     | chi2: 1.7219253976976479
[2025-10-11 13:35:30] 2025-10-11 17:14:50,462 | INFO     | current chi2=1.7219253976976479 (change=48.12773279614005 %)
[2025-10-11 13:35:30] 2025-10-11 17:14:50,491 | INFO     | sum of square deviations: 453365955002.80524
[2025-10-11 13:35:30] 2025-10-11 17:14:50,819 | INFO     | monitor loop #3350: job 0:6837366129 is in state 'finished'
[2025-10-11 13:35:30] 2025-10-11 17:14:50,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 13:35:30] 2025-10-11 17:14:51,282 | INFO     | sum of deviations: 40260764349.7323
[2025-10-11 13:35:30] 2025-10-11 17:14:51,283 | INFO     | mean x: 1760168151.260793
[2025-10-11 13:35:30] 2025-10-11 17:14:51,283 | INFO     | mean y: 2602215.9198237886
[2025-10-11 13:35:30] 2025-10-11 17:14:51,283 | INFO     | -- intersect: -153707966.5537946
[2025-10-11 13:35:30] 2025-10-11 17:14:51,283 | INFO     | intersect: -153707966.5537946
[2025-10-11 13:35:30] 2025-10-11 17:14:51,285 | INFO     | chi2: 1.6604100797308288
[2025-10-11 13:35:30] 2025-10-11 17:14:51,285 | INFO     | current chi2=1.6604100797308288 (change=3.5724728869827924 %)
[2025-10-11 13:35:30] 2025-10-11 17:14:51,285 | INFO     | left removable region: 20
[2025-10-11 13:35:30] 2025-10-11 17:14:51,306 | INFO     | sum of square deviations: 428663822911.5869
[2025-10-11 13:35:30] 2025-10-11 17:14:51,896 | INFO     | sum of deviations: 222514820338.68637
[2025-10-11 13:35:30] 2025-10-11 17:14:51,986 | INFO     | mean x: 1760168120.7558348
[2025-10-11 13:35:30] 2025-10-11 17:14:51,986 | INFO     | mean y: 2605515.0098743266
[2025-10-11 13:35:30] 2025-10-11 17:14:51,986 | INFO     | -- intersect: -911078990.7074404
[2025-10-11 13:35:30] 2025-10-11 17:14:51,986 | INFO     | intersect: -911078990.7074404
[2025-10-11 13:35:30] 2025-10-11 17:14:51,988 | INFO     | chi2: 0.021502925820728068
[2025-10-11 13:35:30] 2025-10-11 17:14:51,989 | INFO     | -- intersect: -911078990.7074404
[2025-10-11 13:35:30] 2025-10-11 17:14:52,063 | INFO     | current memory leak: 0.52 B/s (using 1114 data points, chi2=0.02)
[2025-10-11 13:35:30] 2025-10-11 17:14:52,064 | INFO     | could have reported an average CPU frequency of 2899 MHz (41 samples)
[2025-10-11 13:35:30] 2025-10-11 17:14:52,065 | INFO     | ..............................
[2025-10-11 13:35:30] 2025-10-11 17:14:52,065 | INFO     | . Timing measurements:
[2025-10-11 13:35:30] 2025-10-11 17:14:52,065 | INFO     | . get job = 0 s
[2025-10-11 13:35:30] 2025-10-11 17:14:52,065 | INFO     | . initial setup = 2 s
[2025-10-11 13:35:30] 2025-10-11 17:14:52,065 | INFO     | . payload setup = 7 s
[2025-10-11 13:35:30] 2025-10-11 17:14:52,065 | INFO     | . stage-in = 0 s
[2025-10-11 13:35:30] 2025-10-11 17:14:52,066 | INFO     | . payload execution = 69847 s
[2025-10-11 13:35:30] 2025-10-11 17:14:52,066 | INFO     | . stage-out = 15 s
[2025-10-11 13:35:30] 2025-10-11 17:14:52,066 | INFO     | . log creation = 6 s
[2025-10-11 13:35:30] 2025-10-11 17:14:52,066 | INFO     | ..............................
[2025-10-11 13:35:30] 2025-10-11 17:14:55,240 | INFO     | 
[2025-10-11 13:35:30] 2025-10-11 17:14:55,240 | INFO     | job summary report
[2025-10-11 13:35:30] 2025-10-11 17:14:55,240 | INFO     | --------------------------------------------------
[2025-10-11 13:35:30] 2025-10-11 17:14:55,240 | INFO     | PanDA job id: 6837366129
[2025-10-11 13:35:30] 2025-10-11 17:14:55,241 | INFO     | task id: 46676269
[2025-10-11 13:35:30] 2025-10-11 17:14:55,241 | INFO     | errors: (none)
[2025-10-11 13:35:30] 2025-10-11 17:14:55,241 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 13:35:30] 2025-10-11 17:14:55,241 | INFO     | pilot state: finished 
[2025-10-11 13:35:30] 2025-10-11 17:14:55,241 | INFO     | transexitcode: 0
[2025-10-11 13:35:30] 2025-10-11 17:14:55,241 | INFO     | exeerrorcode: 0
[2025-10-11 13:35:30] 2025-10-11 17:14:55,241 | INFO     | exeerrordiag: 
[2025-10-11 13:35:30] 2025-10-11 17:14:55,242 | INFO     | exitcode: 0
[2025-10-11 13:35:30] 2025-10-11 17:14:55,242 | INFO     | exitmsg: OK
[2025-10-11 13:35:30] 2025-10-11 17:14:55,242 | INFO     | cpuconsumptiontime: 77850 s
[2025-10-11 13:35:30] 2025-10-11 17:14:55,242 | INFO     | nevents: 400
[2025-10-11 13:35:30] 2025-10-11 17:14:55,242 | INFO     | neventsw: 0
[2025-10-11 13:35:30] 2025-10-11 17:14:55,242 | INFO     | pid: 1301945
[2025-10-11 13:35:30] 2025-10-11 17:14:55,242 | INFO     | pgrp: 1301945
[2025-10-11 13:35:30] 2025-10-11 17:14:55,243 | INFO     | corecount: 10
[2025-10-11 13:35:30] 2025-10-11 17:14:55,243 | INFO     | event service: False
[2025-10-11 13:35:30] 2025-10-11 17:14:55,243 | INFO     | sizes: {0: 2348029, 1: 2348885, 2: 2348885, 6: 2349175, 12: 2349203, 69861: 2403438, 69863: 2403565, 69880: 2412619, 69883: 2412675, 69956: 2412965}
[2025-10-11 13:35:30] 2025-10-11 17:14:55,243 | INFO     | --------------------------------------------------
[2025-10-11 13:35:30] 2025-10-11 17:14:55,243 | INFO     | 
[2025-10-11 13:35:30] 2025-10-11 17:14:55,320 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 13:35:30] 2025-10-11 17:14:55,656 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,657 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,657 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,657 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,657 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,657 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,658 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,658 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,658 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,658 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,658 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,658 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,659 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,659 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,659 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,659 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,659 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,659 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 13:35:30] 2025-10-11 17:14:55,659 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,694 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 13:35:30] 2025-10-11 17:14:55,695 | INFO     | job 6837366129 has completed (purged errors)
[2025-10-11 13:35:30] 2025-10-11 17:14:55,695 | INFO     | overall cleanup function is called
[2025-10-11 13:35:30] 2025-10-11 17:14:56,742 | INFO     | --- collectZombieJob: --- 10, [1301945]
[2025-10-11 13:35:30] 2025-10-11 17:14:56,742 | INFO     | zombie collector waiting for pid 1301945
[2025-10-11 13:35:30] 2025-10-11 17:14:56,742 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 13:35:30] 2025-10-11 17:14:56,742 | INFO     | collected zombie processes
[2025-10-11 13:35:30] 2025-10-11 17:14:56,743 | INFO     | will attempt to kill all subprocesses of pid=1301945
[2025-10-11 13:35:30] 2025-10-11 17:14:58,568 | INFO     | PID=1281787 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 13:35:30] 2025-10-11 17:14:58,568 | INFO     | .. there are 8 such processes running
[2025-10-11 13:35:30] 2025-10-11 17:15:01,321 | INFO     | process IDs to be killed: [1301945] (in reverse order)
[2025-10-11 13:35:30] 2025-10-11 17:15:02,624 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 13:35:30] 2025-10-11 17:15:02,624 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 13:35:30] 2025-10-11 17:15:02,814 | INFO     | did not find any defunct processes belonging to 1301945
[2025-10-11 13:35:30] 2025-10-11 17:15:02,983 | INFO     | did not find any defunct processes belonging to 1301945
[2025-10-11 13:35:30] 2025-10-11 17:15:02,983 | INFO     | ready for new job
[2025-10-11 13:35:30] 2025-10-11 17:15:02,984 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 13:35:30] 2025-10-11 17:15:03,026 | INFO     | ***************************************
[2025-10-11 13:35:30] 2025-10-11 17:15:03,027 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 13:35:30] 2025-10-11 17:15:03,027 | INFO     | ***************************************
[2025-10-11 13:35:30] 2025-10-11 17:15:03,027 | INFO     | 
[2025-10-11 13:35:30] 2025-10-11 17:15:03,083 | INFO     | architecture information:
[2025-10-11 13:35:30] 2025-10-11 17:15:03,127 | INFO     | executing command: cat /etc/os-release
[2025-10-11 13:35:30] 2025-10-11 17:15:03,372 | INFO     | cat /etc/os-release:
[2025-10-11 13:35:30] NAME="CentOS Linux"
[2025-10-11 13:35:30] VERSION="7 (Core)"
[2025-10-11 13:35:30] ID="centos"
[2025-10-11 13:35:30] ID_LIKE="rhel fedora"
[2025-10-11 13:35:30] VERSION_ID="7"
[2025-10-11 13:35:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 13:35:30] ANSI_COLOR="0;31"
[2025-10-11 13:35:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 13:35:30] HOME_URL="https://www.centos.org/"
[2025-10-11 13:35:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 13:35:30] 
[2025-10-11 13:35:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 13:35:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 13:35:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 13:35:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 13:35:30] 
[2025-10-11 13:35:30] 2025-10-11 17:15:03,373 | INFO     | ***************************************
[2025-10-11 13:35:30] 2025-10-11 17:15:03,888 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 13:35:30] 2025-10-11 17:15:04,184 | INFO     | sufficient remaining disk space (52734984192 B)
[2025-10-11 13:35:30] 2025-10-11 17:15:04,185 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 13:35:30] 2025-10-11 17:15:04,185 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 13:35:30] 2025-10-11 17:15:04,185 | INFO     | update_server=False
[2025-10-11 13:35:30] 2025-10-11 17:15:04,185 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 13:35:30] 2025-10-11 17:15:04,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 13:35:30] 2025-10-11 17:15:04,296 | INFO     | all payload control threads have been joined
[2025-10-11 13:35:30] 2025-10-11 17:15:04,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:35:30] 2025-10-11 17:15:04,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:35:30] 2025-10-11 17:15:04,698 | INFO     | aborting loop
[2025-10-11 13:35:30] 2025-10-11 17:15:04,997 | INFO     | all data control threads have been joined
[2025-10-11 13:35:30] 2025-10-11 17:15:05,203 | INFO     | [job] retrieve thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:05,302 | INFO     | [payload] control thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:05,342 | INFO     | [job] queue monitor thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:05,493 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:05,506 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:05,525 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:05,704 | INFO     | [job] job monitor thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:05,833 | INFO     | [data] copytool_in thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:05,876 | INFO     | all job control threads have been joined
[2025-10-11 13:35:30] 2025-10-11 17:15:06,003 | INFO     | [data] control thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:06,171 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 13:35:30] 2025-10-11 17:15:06,197 | INFO     | [data] copytool_out thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:06,297 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:06,381 | INFO     | [job] validate thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:06,397 | INFO     | [monitor] cgroup control has ended
[2025-10-11 13:35:30] 2025-10-11 17:15:06,582 | INFO     | [payload] failed_post thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:06,815 | INFO     | [payload] validate_post thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:06,884 | INFO     | [job] control thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:10,180 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 13:35:30] 2025-10-11 17:15:11,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139897804891968)>', '<ExcThread(monitor, started 139897302128384)>']
[2025-10-11 13:35:30] 2025-10-11 17:15:16,281 | INFO     | all workflow threads have been joined
[2025-10-11 13:35:30] 2025-10-11 17:15:16,288 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 13:35:30] 2025-10-11 17:15:16,288 | INFO     | traces error code: 0
[2025-10-11 13:35:30] 2025-10-11 17:15:16,289 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 13:35:30] 2025-10-11 17:15:36,503 | INFO     | PID=1281787 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 13:35:30] 2025-10-11 17:15:36,510 | INFO     | .. there are 8 such processes running
[2025-10-11 13:35:30] 2025-10-11 17:15:36,511 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 13:35:30] 2025-10-11 17:15:36,512 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 13:35:30] 2025-10-11 17:15:36,512 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 13:35:30] 2025-10-11 17:15:36,512 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 13:35:30] 2025-10-11 17:15:36,512 | INFO     | [monitor] control thread has ended
[2025-10-11 13:35:30] 2025-10-11 17:15:37,036 [wrapper] ==== pilot stdout END ====
[2025-10-11 13:35:30] 2025-10-11 17:15:37,088 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 13:35:30] 2025-10-11 17:15:37,094 [wrapper] pilotpid: 1281787
[2025-10-11 13:35:30] 2025-10-11 17:15:37,097 [wrapper] Pilot exit status: 0
[2025-10-11 13:35:30] 2025-10-11 17:15:37,350 [wrapper] pandaids: 6837366129 6837366129
[2025-10-11 13:35:30] 2025-10-11 17:15:38,110 [wrapper] cleanup supervisor_pilot 2929985 1281789
[2025-10-11 13:35:30] 2025-10-11 17:15:38,124 [wrapper] Test setup, not cleaning
[2025-10-11 13:35:30] 2025-10-11 17:15:38,146 [wrapper] apfmon messages muted
[2025-10-11 13:35:30] 2025-10-11 17:15:38,241 [wrapper] ==== wrapper stdout END ====
[2025-10-11 13:35:30] 2025-10-11 17:15:38,260 [wrapper] ==== wrapper stderr END ====
[2025-10-11 13:35:30]  *** Error codes and diagnostics ***
[2025-10-11 13:35:30]     "exeErrorCode": 0,
[2025-10-11 13:35:30]     "exeErrorDiag": "",
[2025-10-11 13:35:30]     "pilotErrorCode": 0,
[2025-10-11 13:35:30]     "pilotErrorDiag": "",
[2025-10-11 13:35:30]  *** Listing of results directory ***
[2025-10-11 13:35:30] total 628036
[2025-10-11 13:35:30] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 18:55 pilot3.tar.gz
[2025-10-11 13:35:30] -rwx------. 1 boincer umatlas     36292 Oct  9 19:01 runpilot2-wrapper.sh
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 19:01 queuedata.json
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas       100 Oct 10 06:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 13:35:30] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 06:48 run_atlas
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas       105 Oct 10 06:48 job.xml
[2025-10-11 13:35:30] -rw-r--r--. 3 boincer umatlas 218815792 Oct 10 06:48 EVNT.46676267._001164.pool.root.1
[2025-10-11 13:35:30] -rw-r--r--. 3 boincer umatlas 218815792 Oct 10 06:48 ATLAS.root_0
[2025-10-11 13:35:30] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 06:48 start_atlas.sh
[2025-10-11 13:35:30] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 06:48 shared
[2025-10-11 13:35:30] -rw-r--r--. 2 boincer umatlas    569676 Oct 10 06:48 input.tar.gz
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas         0 Oct 10 06:48 boinc_lockfile
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 17:48 pandaJob.out
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas    975517 Oct 10 17:48 agis_schedconf.cvmfs.json
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas 184127928 Oct 11 13:10 HITS.46676269._027730.pool.root.1
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas       532 Oct 11 13:10 boinc_task_state.xml
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas      1055 Oct 11 13:13 memory_monitor_summary.json
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas   1560580 Oct 11 13:13 agis_ddmendpoints.agis.ALL.json
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas   1126814 Oct 11 13:13 log.46676269._027730.job.log.tgz.1
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas      7824 Oct 11 13:14 heartbeat.json
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas        96 Oct 11 13:15 pilot_heartbeat.json
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas       822 Oct 11 13:15 pilotlog.txt
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas   7594137 Oct 11 13:15 log.46676269._027730.job.log.1
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas       357 Oct 11 13:15 output.list
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas       620 Oct 11 13:15 runtime_log
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas   8744960 Oct 11 13:15 result.tar.gz
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas      8791 Oct 11 13:15 runtime_log.err
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas       783 Oct 11 13:15 6L1KDm3oER8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMZbNDmi0NwDo.diag
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas      6526 Oct 11 13:27 init_data.xml
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 13:35 boinc_mmap_file
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas        29 Oct 11 13:35 wrapper_checkpoint.txt
[2025-10-11 13:35:30] -rw-r--r--. 1 boincer umatlas     23396 Oct 11 13:35 stderr.txt
[2025-10-11 13:35:30] HITS file was successfully produced:
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas 184127928 Oct 11 13:10 shared/HITS.pool.root.1
[2025-10-11 13:35:30]  *** Contents of shared directory: ***
[2025-10-11 13:35:30] total 402624
[2025-10-11 13:35:30] -rw-r--r--. 3 boincer umatlas 218815792 Oct 10 06:48 ATLAS.root_0
[2025-10-11 13:35:30] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 06:48 start_atlas.sh
[2025-10-11 13:35:30] -rw-r--r--. 2 boincer umatlas    569676 Oct 10 06:48 input.tar.gz
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas 184127928 Oct 11 13:10 HITS.pool.root.1
[2025-10-11 13:35:30] -rw-------. 1 boincer umatlas   8744960 Oct 11 13:15 result.tar.gz
13:35:32 (1274441): run_atlas exited; CPU time 80061.844507
13:35:32 (1274441): called boinc_finish(0)

</stderr_txt>
]]>

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