Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:04 (117462): wrapper (7.7.26015): starting
00:03:04 (117462): wrapper: running run_atlas (--nthreads 9)
[2025-10-11 00:03:04] Arguments: --nthreads 9
[2025-10-11 00:03:04] Threads: 9
[2025-10-11 00:03:04] Checking for CVMFS
[2025-10-11 00:03:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:03:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:03:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:03:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:03:06] 2.13.2.0 705810 127317 205636 151559 -483 750 23952470 32935936 27184 16776704 0 93851916 99.690 76384905 30055 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 00:03:06] CVMFS is ok
[2025-10-11 00:03:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:03:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:03:06] Further information can be found at the LHC@home message board.
[2025-10-11 00:03:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:03:06] Checking for apptainer binary...
[2025-10-11 00:03:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:03:06] Running /usr/bin/apptainer --version
[2025-10-11 00:03:06] apptainer version 1.4.3-1.el9
[2025-10-11 00:03:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:03:07] c-8-16.aglt2.org
[2025-10-11 00:03:07] apptainer works
[2025-10-11 00:03:07] Set ATHENA_PROC_NUMBER=9
[2025-10-11 00:03:07] Set ATHENA_CORE_NUMBER=9
[2025-10-11 00:03:07] Starting ATLAS job with PandaID=6837378889
[2025-10-11 00:03:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 00:02:57]  *** The last 200 lines of the pilot log: ***
[2025-10-12 00:02:58] 2025-10-11 18:21:01,963 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0740249999976
[2025-10-12 00:02:58] 2025-10-11 18:21:01,975 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6837378889/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 00:02:58] 2025-10-11 18:21:01,998 | INFO     | extracted standard info from prmon json
[2025-10-12 00:02:58] 2025-10-11 18:21:01,999 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 00:02:58] 2025-10-11 18:21:01,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 00:02:58] 2025-10-11 18:21:01,999 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 00:02:58] 2025-10-11 18:21:01,999 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 00:02:58] 2025-10-11 18:21:02,014 | INFO     | fitting pss+swap vs Time
[2025-10-12 00:02:58] 2025-10-11 18:21:02,016 | INFO     | sum of square deviations: 183784033649.58926
[2025-10-12 00:02:58] 2025-10-11 18:21:02,042 | INFO     | sum of deviations: 251327492554.80365
[2025-10-12 00:02:58] 2025-10-11 18:21:02,042 | INFO     | mean x: 1760181180.5535715
[2025-10-12 00:02:58] 2025-10-11 18:21:02,042 | INFO     | mean y: 2443578.148809524
[2025-10-12 00:02:58] 2025-10-11 18:21:02,042 | INFO     | -- intersect: -2404631257.2754045
[2025-10-12 00:02:58] 2025-10-11 18:21:02,042 | INFO     | intersect: -2404631257.2754045
[2025-10-12 00:02:58] 2025-10-11 18:21:02,044 | INFO     | chi2: 4.607502423787368
[2025-10-12 00:02:58] 2025-10-11 18:21:02,045 | INFO     | sum of square deviations: 180522033563.6361
[2025-10-12 00:02:58] 2025-10-11 18:21:02,079 | INFO     | sum of deviations: 310423580680.22046
[2025-10-12 00:02:58] 2025-10-11 18:21:02,079 | INFO     | mean x: 1760181028.063473
[2025-10-12 00:02:58] 2025-10-11 18:21:02,079 | INFO     | mean y: 2446328.8826347305
[2025-10-12 00:02:58] 2025-10-11 18:21:02,079 | INFO     | -- intersect: -3024340410.61109
[2025-10-12 00:02:58] 2025-10-11 18:21:02,080 | INFO     | intersect: -3024340410.61109
[2025-10-12 00:02:58] 2025-10-11 18:21:02,095 | INFO     | chi2: 3.8187204494452565
[2025-10-12 00:02:58] 2025-10-11 18:21:02,095 | INFO     | current chi2=3.8187204494452565 (change=17.119512954997703 %)
[2025-10-12 00:02:58] 2025-10-11 18:21:02,096 | INFO     | right removable region: 834
[2025-10-12 00:02:58] 2025-10-11 18:21:02,108 | INFO     | sum of square deviations: 180521083543.3764
[2025-10-12 00:02:58] 2025-10-11 18:21:02,181 | INFO     | sum of deviations: 14681618558.389221
[2025-10-12 00:02:58] 2025-10-11 18:21:02,182 | INFO     | mean x: 1760181333.0658684
[2025-10-12 00:02:58] 2025-10-11 18:21:02,182 | INFO     | mean y: 2454631.483832335
[2025-10-12 00:02:58] 2025-10-11 18:21:02,182 | INFO     | -- intersect: -140699344.8740629
[2025-10-12 00:02:58] 2025-10-11 18:21:02,182 | INFO     | intersect: -140699344.8740629
[2025-10-12 00:02:58] 2025-10-11 18:21:02,183 | INFO     | chi2: 1.579389823257199
[2025-10-12 00:02:58] 2025-10-11 18:21:02,184 | INFO     | current chi2=1.579389823257199 (change=65.7213457967334 %)
[2025-10-12 00:02:58] 2025-10-11 18:21:02,185 | INFO     | sum of square deviations: 177297073494.71786
[2025-10-12 00:02:58] 2025-10-11 18:21:02,252 | INFO     | sum of deviations: -69175269087.47708
[2025-10-12 00:02:58] 2025-10-11 18:21:02,252 | INFO     | mean x: 1760181485.5759037
[2025-10-12 00:02:58] 2025-10-11 18:21:02,252 | INFO     | mean y: 2458595.4361445783
[2025-10-12 00:02:58] 2025-10-11 18:21:02,253 | INFO     | -- intersect: 689221357.5475894
[2025-10-12 00:02:58] 2025-10-11 18:21:02,253 | INFO     | intersect: 689221357.5475894
[2025-10-12 00:02:58] 2025-10-11 18:21:02,254 | INFO     | chi2: 1.1991773380793347
[2025-10-12 00:02:58] 2025-10-11 18:21:02,254 | INFO     | current chi2=1.1991773380793347 (change=24.07337818561769 %)
[2025-10-12 00:02:58] 2025-10-11 18:21:02,254 | INFO     | left removable region: 20
[2025-10-12 00:02:58] 2025-10-11 18:21:02,276 | INFO     | sum of square deviations: 167239611034.4142
[2025-10-12 00:02:58] 2025-10-11 18:21:02,361 | INFO     | sum of deviations: -52405711113.62527
[2025-10-12 00:02:58] 2025-10-11 18:21:02,362 | INFO     | mean x: 1760181607.6056511
[2025-10-12 00:02:58] 2025-10-11 18:21:02,362 | INFO     | mean y: 2463325.396805897
[2025-10-12 00:02:58] 2025-10-11 18:21:02,362 | INFO     | -- intersect: 554028640.9649973
[2025-10-12 00:02:58] 2025-10-11 18:21:02,362 | INFO     | intersect: 554028640.9649973
[2025-10-12 00:02:58] 2025-10-11 18:21:02,363 | INFO     | chi2: 0.3166763005323469
[2025-10-12 00:02:58] 2025-10-11 18:21:02,363 | INFO     | -- intersect: 554028640.9649973
[2025-10-12 00:02:58] 2025-10-11 18:21:02,363 | INFO     | current memory leak: -0.31 B/s (using 814 data points, chi2=0.32)
[2025-10-12 00:02:58] 2025-10-11 18:21:02,364 | INFO     | could have reported an average CPU frequency of 2600 MHz (31 samples)
[2025-10-12 00:02:58] 2025-10-11 18:21:02,374 | INFO     | ..............................
[2025-10-12 00:02:58] 2025-10-11 18:21:02,374 | INFO     | . Timing measurements:
[2025-10-12 00:02:58] 2025-10-11 18:21:02,374 | INFO     | . get job = 0 s
[2025-10-12 00:02:58] 2025-10-11 18:21:02,374 | INFO     | . initial setup = 6 s
[2025-10-12 00:02:58] 2025-10-11 18:21:02,374 | INFO     | . payload setup = 40 s
[2025-10-12 00:02:58] 2025-10-11 18:21:02,374 | INFO     | . stage-in = 0 s
[2025-10-12 00:02:58] 2025-10-11 18:21:02,374 | INFO     | . payload execution = 51263 s
[2025-10-12 00:02:58] 2025-10-11 18:21:02,375 | INFO     | . stage-out = 6 s
[2025-10-12 00:02:58] 2025-10-11 18:21:02,375 | INFO     | . log creation = 1 s
[2025-10-12 00:02:58] 2025-10-11 18:21:02,375 | INFO     | ..............................
[2025-10-12 00:02:58] 2025-10-11 18:21:02,780 | INFO     | 
[2025-10-12 00:02:58] 2025-10-11 18:21:02,780 | INFO     | job summary report
[2025-10-12 00:02:58] 2025-10-11 18:21:02,780 | INFO     | --------------------------------------------------
[2025-10-12 00:02:58] 2025-10-11 18:21:02,780 | INFO     | PanDA job id: 6837378889
[2025-10-12 00:02:58] 2025-10-11 18:21:02,780 | INFO     | task id: 46676269
[2025-10-12 00:02:58] 2025-10-11 18:21:02,780 | INFO     | errors: (none)
[2025-10-12 00:02:58] 2025-10-11 18:21:02,780 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | pilot state: finished 
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | transexitcode: 0
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | exeerrorcode: 0
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | exeerrordiag: 
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | exitcode: 0
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | exitmsg: OK
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | cpuconsumptiontime: 50541 s
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | nevents: 400
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | neventsw: 0
[2025-10-12 00:02:58] 2025-10-11 18:21:02,781 | INFO     | pid: 148402
[2025-10-12 00:02:58] 2025-10-11 18:21:02,782 | INFO     | pgrp: 148402
[2025-10-12 00:02:58] 2025-10-11 18:21:02,782 | INFO     | corecount: 9
[2025-10-12 00:02:58] 2025-10-11 18:21:02,782 | INFO     | event service: False
[2025-10-12 00:02:58] 2025-10-11 18:21:02,782 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348742, 3: 2348913, 14: 2348941, 25: 2348969, 30: 2349387, 36: 2349415, 51308: 2394701, 51309: 2394700, 51316: 2403754, 51318: 
[2025-10-12 00:02:58] 2025-10-11 18:21:02,782 | INFO     | --------------------------------------------------
[2025-10-12 00:02:58] 2025-10-11 18:21:02,782 | INFO     | 
[2025-10-12 00:02:58] 2025-10-11 18:21:02,782 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 00:02:58] 2025-10-11 18:21:02,831 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,831 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,831 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,832 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,833 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 00:02:58] 2025-10-11 18:21:02,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,833 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 00:02:58] 2025-10-11 18:21:02,834 | INFO     | job 6837378889 has completed (purged errors)
[2025-10-12 00:02:58] 2025-10-11 18:21:02,834 | INFO     | overall cleanup function is called
[2025-10-12 00:02:58] 2025-10-11 18:21:03,551 | INFO     | PID=125938 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 00:02:58] 2025-10-11 18:21:03,551 | INFO     | .. there are 41 such processes running
[2025-10-12 00:02:58] 2025-10-11 18:21:03,852 | INFO     | --- collectZombieJob: --- 10, [148402]
[2025-10-12 00:02:58] 2025-10-11 18:21:03,852 | INFO     | zombie collector waiting for pid 148402
[2025-10-12 00:02:58] 2025-10-11 18:21:03,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 00:02:58] 2025-10-11 18:21:03,852 | INFO     | collected zombie processes
[2025-10-12 00:02:58] 2025-10-11 18:21:03,852 | INFO     | will attempt to kill all subprocesses of pid=148402
[2025-10-12 00:02:58] 2025-10-11 18:21:04,351 | INFO     | process IDs to be killed: [148402] (in reverse order)
[2025-10-12 00:02:58] 2025-10-11 18:21:04,498 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 00:02:58] 2025-10-11 18:21:04,499 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 00:02:58] 2025-10-11 18:21:04,540 | INFO     | did not find any defunct processes belonging to 148402
[2025-10-12 00:02:58] 2025-10-11 18:21:04,595 | INFO     | did not find any defunct processes belonging to 148402
[2025-10-12 00:02:58] 2025-10-11 18:21:04,609 | INFO     | ready for new job
[2025-10-12 00:02:58] 2025-10-11 18:21:04,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 00:02:58] 2025-10-11 18:21:04,630 | INFO     | ***************************************
[2025-10-12 00:02:58] 2025-10-11 18:21:04,630 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 00:02:58] 2025-10-11 18:21:04,630 | INFO     | ***************************************
[2025-10-12 00:02:58] 2025-10-11 18:21:04,630 | INFO     | 
[2025-10-12 00:02:58] 2025-10-11 18:21:04,654 | INFO     | architecture information:
[2025-10-12 00:02:58] 2025-10-11 18:21:04,676 | INFO     | executing command: cat /etc/os-release
[2025-10-12 00:02:58] 2025-10-11 18:21:04,752 | INFO     | cat /etc/os-release:
[2025-10-12 00:02:58] NAME="CentOS Linux"
[2025-10-12 00:02:58] VERSION="7 (Core)"
[2025-10-12 00:02:58] ID="centos"
[2025-10-12 00:02:58] ID_LIKE="rhel fedora"
[2025-10-12 00:02:58] VERSION_ID="7"
[2025-10-12 00:02:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 00:02:58] ANSI_COLOR="0;31"
[2025-10-12 00:02:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 00:02:58] HOME_URL="https://www.centos.org/"
[2025-10-12 00:02:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 00:02:58] 
[2025-10-12 00:02:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 00:02:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 00:02:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 00:02:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 00:02:58] 
[2025-10-12 00:02:58] 2025-10-11 18:21:04,752 | INFO     | ***************************************
[2025-10-12 00:02:58] 2025-10-11 18:21:05,256 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 00:02:58] 2025-10-11 18:21:05,294 | INFO     | sufficient remaining disk space (74344038400 B)
[2025-10-12 00:02:58] 2025-10-11 18:21:05,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 00:02:58] 2025-10-11 18:21:05,295 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 00:02:58] 2025-10-11 18:21:05,295 | INFO     | update_server=False
[2025-10-12 00:02:58] 2025-10-11 18:21:05,295 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 00:02:58] 2025-10-11 18:21:05,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 00:02:58] 2025-10-11 18:21:05,571 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 00:02:58] 2025-10-11 18:21:05,574 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 00:02:58] 2025-10-11 18:21:05,574 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 00:02:58] 2025-10-11 18:21:05,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:02:58] 2025-10-11 18:21:05,574 | INFO     | will abort loop
[2025-10-12 00:02:58] 2025-10-11 18:21:05,885 | INFO     | all job control threads have been joined
[2025-10-12 00:02:58] 2025-10-11 18:21:06,198 | INFO     | all data control threads have been joined
[2025-10-12 00:02:58] 2025-10-11 18:21:06,301 | INFO     | [job] retrieve thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:06,329 | INFO     | [payload] failed_post thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:06,513 | INFO     | [payload] validate_post thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:06,584 | INFO     | [job] job monitor thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:06,754 | INFO     | all payload control threads have been joined
[2025-10-12 00:02:58] 2025-10-11 18:21:06,896 | INFO     | [job] control thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:06,915 | INFO     | [job] validate thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:07,216 | INFO     | [data] control thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:07,337 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:07,362 | INFO     | [data] copytool_in thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:07,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:07,508 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:07,578 | INFO     | [data] copytool_out thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:07,605 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:07,760 | INFO     | [payload] control thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:07,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 00:02:58] 2025-10-11 18:21:08,805 | INFO     | [job] queue monitor thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:09,313 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 00:02:58] 2025-10-11 18:21:37,517 | INFO     | PID=125938 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 00:02:58] 2025-10-11 18:21:37,522 | INFO     | .. there are 41 such processes running
[2025-10-12 00:02:58] 2025-10-11 18:21:37,523 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 00:02:58] 2025-10-11 18:21:37,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 00:02:58] 2025-10-11 18:21:37,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 00:02:58] 2025-10-11 18:22:04,919 | INFO     | [monitor] cgroup control has ended
[2025-10-12 00:02:58] 2025-10-11 18:22:06,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139960893953856)>', '<ExcThread(monitor, started 139960409638656)>']
[2025-10-12 00:02:58] 2025-10-11 18:22:06,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 00:02:58] 2025-10-11 18:22:06,728 | INFO     | [monitor] control thread has ended
[2025-10-12 00:02:58] 2025-10-11 18:22:11,136 | INFO     | all workflow threads have been joined
[2025-10-12 00:02:58] 2025-10-11 18:22:11,137 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 00:02:58] 2025-10-11 18:22:11,137 | INFO     | traces error code: 0
[2025-10-12 00:02:58] 2025-10-11 18:22:11,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 00:02:58] 2025-10-11 18:22:12,143 [wrapper] ==== pilot stdout END ====
[2025-10-12 00:02:58] 2025-10-11 18:22:12,182 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 00:02:58] 2025-10-11 18:22:12,189 [wrapper] pilotpid: 125938
[2025-10-12 00:02:58] 2025-10-11 18:22:12,192 [wrapper] Pilot exit status: 0
[2025-10-12 00:02:58] 2025-10-11 18:22:12,366 [wrapper] pandaids: 6837378889
[2025-10-12 00:02:58] 2025-10-11 18:22:12,715 [wrapper] cleanup supervisor_pilot 2489855 125939
[2025-10-12 00:02:58] 2025-10-11 18:22:12,746 [wrapper] Test setup, not cleaning
[2025-10-12 00:02:58] 2025-10-11 18:22:12,765 [wrapper] apfmon messages muted
[2025-10-12 00:02:58] 2025-10-11 18:22:12,795 [wrapper] ==== wrapper stdout END ====
[2025-10-12 00:02:58] 2025-10-11 18:22:12,850 [wrapper] ==== wrapper stderr END ====
[2025-10-12 00:02:58]  *** Error codes and diagnostics ***
[2025-10-12 00:02:58]     "exeErrorCode": 0,
[2025-10-12 00:02:58]     "exeErrorDiag": "",
[2025-10-12 00:02:58]     "pilotErrorCode": 0,
[2025-10-12 00:02:58]     "pilotErrorDiag": "",
[2025-10-12 00:02:58]  *** Listing of results directory ***
[2025-10-12 00:02:58] total 420440
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas    557409 Oct  9 21:33 pilot3.tar.gz
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas      5112 Oct  9 21:46 queuedata.json
[2025-10-12 00:02:58] -rwx------. 1 boincer umatlas     36292 Oct  9 21:47 runpilot2-wrapper.sh
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas       100 Oct 11 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 00:02:58] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 00:03 run_atlas
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas       105 Oct 11 00:03 job.xml
[2025-10-12 00:02:58] -rw-r--r--. 2 boincer umatlas 219796336 Oct 11 00:03 EVNT.46676267._001225.pool.root.1
[2025-10-12 00:02:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:03 start_atlas.sh
[2025-10-12 00:02:58] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 00:03 shared
[2025-10-12 00:02:58] -rw-r--r--. 2 boincer umatlas    569679 Oct 11 00:03 input.tar.gz
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas         0 Oct 11 00:03 boinc_lockfile
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 00:03 pandaJob.out
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas    975541 Oct 11 00:04 agis_schedconf.cvmfs.json
[2025-10-12 00:02:58] drwx------. 5 boincer umatlas      4096 Oct 11 00:04 pilot3
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas 195002483 Oct 11 14:19 HITS.46676269._030028.pool.root.1
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas       530 Oct 11 14:19 boinc_task_state.xml
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas      1051 Oct 11 14:20 memory_monitor_summary.json
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas   1560580 Oct 11 14:20 agis_ddmendpoints.agis.ALL.json
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas    855487 Oct 11 14:20 log.46676269._030028.job.log.tgz.1
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas      7846 Oct 11 14:21 heartbeat.json
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas        95 Oct 11 14:21 pilot_heartbeat.json
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas      5009 Oct 11 14:22 pilotlog.txt
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas   5055125 Oct 11 14:22 log.46676269._030028.job.log.1
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas       357 Oct 11 14:22 output.list
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas       620 Oct 11 14:22 runtime_log
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas   5928960 Oct 11 14:22 result.tar.gz
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas       661 Oct 11 14:22 WNhMDmyOHR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmo6OMDmvLTlhm.diag
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas      8694 Oct 11 14:22 runtime_log.err
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas      6659 Oct 12 00:02 init_data.xml
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 00:02 boinc_mmap_file
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas        27 Oct 12 00:02 wrapper_checkpoint.txt
[2025-10-12 00:02:58] -rw-r--r--. 1 boincer umatlas     21314 Oct 12 00:02 stderr.txt
[2025-10-12 00:02:58] HITS file was successfully produced:
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas 195002483 Oct 11 14:19 shared/HITS.pool.root.1
[2025-10-12 00:02:58]  *** Contents of shared directory: ***
[2025-10-12 00:02:58] total 411460
[2025-10-12 00:02:58] -rw-r--r--. 2 boincer umatlas 219796336 Oct 11 00:03 ATLAS.root_0
[2025-10-12 00:02:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:03 start_atlas.sh
[2025-10-12 00:02:58] -rw-r--r--. 2 boincer umatlas    569679 Oct 11 00:03 input.tar.gz
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas 195002483 Oct 11 14:19 HITS.pool.root.1
[2025-10-12 00:02:58] -rw-------. 1 boincer umatlas   5928960 Oct 11 14:22 result.tar.gz
00:03:00 (117462): run_atlas exited; CPU time 52311.334885
00:03:00 (117462): called boinc_finish(0)

</stderr_txt>
]]>

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